Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23995

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23990 and AO356_23995 are separated by 55 nucleotidesAO356_23995 and AO356_24000 overlap by 4 nucleotides AO356_23990: AO356_23990 - amino acid ABC transporter, at 5,378,861 to 5,379,703 _23990 AO356_23995: AO356_23995 - amino acid ABC transporter, at 5,379,759 to 5,380,610 _23995 AO356_24000: AO356_24000 - hydroxyacid dehydrogenase, at 5,380,607 to 5,382,031 _24000 Position (kb) 5379 5380 5381Strain fitness (log2 ratio) -1 0 1at 5378.884 kb on - strandat 5379.338 kb on + strand, within AO356_23990at 5379.339 kb on - strand, within AO356_23990at 5379.339 kb on - strand, within AO356_23990at 5379.930 kb on - strand, within AO356_23995at 5379.952 kb on - strand, within AO356_23995at 5380.113 kb on + strand, within AO356_23995at 5380.129 kb on - strand, within AO356_23995at 5380.254 kb on + strand, within AO356_23995at 5380.254 kb on + strand, within AO356_23995at 5380.576 kb on - strandat 5380.576 kb on - strandat 5380.576 kb on - strandat 5380.710 kb on - strandat 5380.830 kb on + strand, within AO356_24000at 5380.830 kb on + strand, within AO356_24000at 5380.831 kb on - strand, within AO356_24000

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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5,378,884 - -0.6
5,379,338 + AO356_23990 0.57 +1.0
5,379,339 - AO356_23990 0.57 -0.5
5,379,339 - AO356_23990 0.57 +1.5
5,379,930 - AO356_23995 0.20 -0.8
5,379,952 - AO356_23995 0.23 +0.1
5,380,113 + AO356_23995 0.42 -0.1
5,380,129 - AO356_23995 0.43 -0.0
5,380,254 + AO356_23995 0.58 +1.2
5,380,254 + AO356_23995 0.58 +0.0
5,380,576 - +0.4
5,380,576 - +0.2
5,380,576 - +0.5
5,380,710 - +1.2
5,380,830 + AO356_24000 0.16 -0.3
5,380,830 + AO356_24000 0.16 +0.3
5,380,831 - AO356_24000 0.16 +0.5

Or see this region's nucleotide sequence