Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18910

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18905 and AO356_18910 are separated by 58 nucleotidesAO356_18910 and AO356_18915 are separated by 345 nucleotidesAO356_18915 and AO356_18920 are separated by 3 nucleotides AO356_18905: AO356_18905 - chemotaxis protein CheW, at 4,249,890 to 4,250,816 _18905 AO356_18910: AO356_18910 - chemotaxis protein, at 4,250,875 to 4,251,702 _18910 AO356_18915: AO356_18915 - flagellar biosynthesis protein FlgB, at 4,252,048 to 4,252,455 _18915 AO356_18920: AO356_18920 - flagellar basal-body rod protein FlgC, at 4,252,459 to 4,252,902 _18920 Position (kb) 4250 4251 4252Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4249.877 kb on + strandat 4249.878 kb on - strandat 4249.878 kb on - strandat 4249.900 kb on + strandat 4249.900 kb on + strandat 4249.999 kb on + strand, within AO356_18905at 4249.999 kb on + strand, within AO356_18905at 4249.999 kb on + strand, within AO356_18905at 4250.000 kb on - strand, within AO356_18905at 4250.000 kb on - strand, within AO356_18905at 4250.000 kb on - strand, within AO356_18905at 4250.000 kb on - strand, within AO356_18905at 4250.000 kb on - strand, within AO356_18905at 4250.000 kb on - strand, within AO356_18905at 4250.000 kb on - strand, within AO356_18905at 4250.000 kb on - strand, within AO356_18905at 4250.172 kb on - strand, within AO356_18905at 4250.178 kb on + strand, within AO356_18905at 4250.178 kb on + strand, within AO356_18905at 4250.178 kb on + strand, within AO356_18905at 4250.179 kb on - strand, within AO356_18905at 4250.179 kb on - strand, within AO356_18905at 4250.179 kb on - strand, within AO356_18905at 4250.283 kb on + strand, within AO356_18905at 4250.283 kb on + strand, within AO356_18905at 4250.284 kb on - strand, within AO356_18905at 4250.284 kb on - strand, within AO356_18905at 4250.284 kb on - strand, within AO356_18905at 4250.284 kb on - strand, within AO356_18905at 4250.284 kb on - strand, within AO356_18905at 4250.462 kb on + strand, within AO356_18905at 4250.462 kb on + strand, within AO356_18905at 4250.462 kb on + strand, within AO356_18905at 4250.462 kb on + strand, within AO356_18905at 4250.462 kb on + strand, within AO356_18905at 4250.463 kb on - strand, within AO356_18905at 4250.463 kb on - strand, within AO356_18905at 4250.463 kb on - strand, within AO356_18905at 4250.463 kb on - strand, within AO356_18905at 4250.463 kb on - strand, within AO356_18905at 4250.463 kb on - strand, within AO356_18905at 4250.463 kb on - strand, within AO356_18905at 4250.538 kb on + strand, within AO356_18905at 4250.539 kb on - strand, within AO356_18905at 4250.539 kb on - strand, within AO356_18905at 4250.629 kb on - strand, within AO356_18905at 4250.690 kb on + strand, within AO356_18905at 4250.690 kb on + strand, within AO356_18905at 4250.690 kb on + strand, within AO356_18905at 4250.690 kb on + strand, within AO356_18905at 4250.690 kb on + strand, within AO356_18905at 4250.690 kb on + strand, within AO356_18905at 4250.690 kb on + strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.691 kb on - strand, within AO356_18905at 4250.814 kb on + strandat 4250.814 kb on + strandat 4250.815 kb on - strandat 4250.819 kb on + strandat 4250.820 kb on - strandat 4250.820 kb on - strandat 4250.872 kb on - strandat 4250.872 kb on - strandat 4250.959 kb on + strand, within AO356_18910at 4250.959 kb on + strand, within AO356_18910at 4250.959 kb on + strand, within AO356_18910at 4250.959 kb on + strand, within AO356_18910at 4250.959 kb on + strand, within AO356_18910at 4250.960 kb on - strand, within AO356_18910at 4250.960 kb on - strand, within AO356_18910at 4250.960 kb on - strand, within AO356_18910at 4250.960 kb on - strand, within AO356_18910at 4250.960 kb on - strand, within AO356_18910at 4250.982 kb on + strand, within AO356_18910at 4250.982 kb on + strand, within AO356_18910at 4250.982 kb on + strand, within AO356_18910at 4250.983 kb on - strand, within AO356_18910at 4251.118 kb on + strand, within AO356_18910at 4251.119 kb on - strand, within AO356_18910at 4251.119 kb on - strand, within AO356_18910at 4251.131 kb on + strand, within AO356_18910at 4251.131 kb on + strand, within AO356_18910at 4251.131 kb on + strand, within AO356_18910at 4251.131 kb on + strand, within AO356_18910at 4251.132 kb on - strand, within AO356_18910at 4251.132 kb on - strand, within AO356_18910at 4251.227 kb on - strand, within AO356_18910at 4251.330 kb on + strand, within AO356_18910at 4251.331 kb on - strand, within AO356_18910at 4251.350 kb on - strand, within AO356_18910at 4251.401 kb on - strand, within AO356_18910at 4251.401 kb on - strand, within AO356_18910at 4251.401 kb on - strand, within AO356_18910at 4251.490 kb on + strand, within AO356_18910at 4251.490 kb on + strand, within AO356_18910at 4251.490 kb on + strand, within AO356_18910at 4251.490 kb on + strand, within AO356_18910at 4251.491 kb on - strand, within AO356_18910at 4251.491 kb on - strand, within AO356_18910at 4251.491 kb on - strand, within AO356_18910at 4251.491 kb on - strand, within AO356_18910at 4251.491 kb on - strand, within AO356_18910at 4251.541 kb on + strand, within AO356_18910at 4251.541 kb on + strand, within AO356_18910at 4251.541 kb on + strand, within AO356_18910at 4251.541 kb on + strand, within AO356_18910at 4251.542 kb on - strand, within AO356_18910at 4251.542 kb on - strand, within AO356_18910at 4251.542 kb on - strand, within AO356_18910at 4251.542 kb on - strand, within AO356_18910at 4251.579 kb on + strand, within AO356_18910at 4251.586 kb on - strand, within AO356_18910at 4251.607 kb on + strand, within AO356_18910at 4251.688 kb on + strandat 4251.688 kb on + strandat 4251.689 kb on - strandat 4251.689 kb on - strandat 4251.689 kb on - strandat 4251.754 kb on + strandat 4251.907 kb on + strandat 4252.015 kb on + strandat 4252.015 kb on + strandat 4252.015 kb on + strandat 4252.016 kb on - strandat 4252.016 kb on - strandat 4252.016 kb on - strandat 4252.016 kb on - strandat 4252.016 kb on - strandat 4252.016 kb on - strandat 4252.016 kb on - strandat 4252.016 kb on - strandat 4252.016 kb on - strandat 4252.019 kb on + strandat 4252.020 kb on - strandat 4252.065 kb on + strandat 4252.159 kb on + strand, within AO356_18915at 4252.159 kb on + strand, within AO356_18915at 4252.160 kb on - strand, within AO356_18915at 4252.160 kb on - strand, within AO356_18915at 4252.160 kb on - strand, within AO356_18915at 4252.160 kb on - strand, within AO356_18915at 4252.258 kb on - strand, within AO356_18915at 4252.300 kb on + strand, within AO356_18915at 4252.300 kb on + strand, within AO356_18915at 4252.301 kb on - strand, within AO356_18915at 4252.301 kb on - strand, within AO356_18915at 4252.301 kb on - strand, within AO356_18915at 4252.366 kb on + strand, within AO356_18915at 4252.367 kb on - strand, within AO356_18915at 4252.367 kb on - strand, within AO356_18915at 4252.416 kb on + strandat 4252.416 kb on + strandat 4252.453 kb on + strandat 4252.453 kb on + strandat 4252.454 kb on - strandat 4252.454 kb on - strandat 4252.454 kb on - strandat 4252.454 kb on - strandat 4252.471 kb on - strandat 4252.475 kb on + strandat 4252.475 kb on + strandat 4252.475 kb on + strandat 4252.476 kb on - strandat 4252.582 kb on + strand, within AO356_18920at 4252.582 kb on + strand, within AO356_18920at 4252.583 kb on - strand, within AO356_18920at 4252.583 kb on - strand, within AO356_18920at 4252.583 kb on - strand, within AO356_18920at 4252.583 kb on - strand, within AO356_18920at 4252.682 kb on + strand, within AO356_18920at 4252.682 kb on + strand, within AO356_18920at 4252.683 kb on - strand, within AO356_18920

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,249,877 + -0.6
4,249,878 - -0.7
4,249,878 - +1.0
4,249,900 + -0.2
4,249,900 + +0.3
4,249,999 + AO356_18905 0.12 +0.1
4,249,999 + AO356_18905 0.12 +0.1
4,249,999 + AO356_18905 0.12 +1.4
4,250,000 - AO356_18905 0.12 -0.4
4,250,000 - AO356_18905 0.12 -0.5
4,250,000 - AO356_18905 0.12 +0.2
4,250,000 - AO356_18905 0.12 +0.2
4,250,000 - AO356_18905 0.12 +1.0
4,250,000 - AO356_18905 0.12 +0.0
4,250,000 - AO356_18905 0.12 -0.6
4,250,000 - AO356_18905 0.12 +0.7
4,250,172 - AO356_18905 0.30 -0.2
4,250,178 + AO356_18905 0.31 -0.7
4,250,178 + AO356_18905 0.31 -0.6
4,250,178 + AO356_18905 0.31 +0.6
4,250,179 - AO356_18905 0.31 +0.5
4,250,179 - AO356_18905 0.31 +0.4
4,250,179 - AO356_18905 0.31 +1.5
4,250,283 + AO356_18905 0.42 +1.1
4,250,283 + AO356_18905 0.42 +0.2
4,250,284 - AO356_18905 0.43 +0.5
4,250,284 - AO356_18905 0.43 +0.2
4,250,284 - AO356_18905 0.43 +0.8
4,250,284 - AO356_18905 0.43 -0.2
4,250,284 - AO356_18905 0.43 -0.3
4,250,462 + AO356_18905 0.62 +1.9
4,250,462 + AO356_18905 0.62 +0.2
4,250,462 + AO356_18905 0.62 +0.8
4,250,462 + AO356_18905 0.62 +0.4
4,250,462 + AO356_18905 0.62 +0.6
4,250,463 - AO356_18905 0.62 -0.6
4,250,463 - AO356_18905 0.62 -0.2
4,250,463 - AO356_18905 0.62 -0.4
4,250,463 - AO356_18905 0.62 +0.4
4,250,463 - AO356_18905 0.62 -0.4
4,250,463 - AO356_18905 0.62 -0.3
4,250,463 - AO356_18905 0.62 -0.4
4,250,538 + AO356_18905 0.70 -0.0
4,250,539 - AO356_18905 0.70 -0.8
4,250,539 - AO356_18905 0.70 +0.2
4,250,629 - AO356_18905 0.80 -0.7
4,250,690 + AO356_18905 0.86 +1.6
4,250,690 + AO356_18905 0.86 +0.6
4,250,690 + AO356_18905 0.86 +0.0
4,250,690 + AO356_18905 0.86 +0.4
4,250,690 + AO356_18905 0.86 +0.2
4,250,690 + AO356_18905 0.86 -0.2
4,250,690 + AO356_18905 0.86 -0.4
4,250,691 - AO356_18905 0.86 -2.4
4,250,691 - AO356_18905 0.86 +0.8
4,250,691 - AO356_18905 0.86 -0.3
4,250,691 - AO356_18905 0.86 -0.4
4,250,691 - AO356_18905 0.86 +0.1
4,250,691 - AO356_18905 0.86 -0.6
4,250,691 - AO356_18905 0.86 -0.8
4,250,691 - AO356_18905 0.86 -0.2
4,250,691 - AO356_18905 0.86 -0.6
4,250,691 - AO356_18905 0.86 -1.6
4,250,691 - AO356_18905 0.86 -1.9
4,250,814 + +0.6
4,250,814 + +0.8
4,250,815 - -0.9
4,250,819 + +0.4
4,250,820 - -1.8
4,250,820 - -0.3
4,250,872 - -2.0
4,250,872 - +1.7
4,250,959 + AO356_18910 0.10 -1.1
4,250,959 + AO356_18910 0.10 -1.4
4,250,959 + AO356_18910 0.10 +0.0
4,250,959 + AO356_18910 0.10 -0.5
4,250,959 + AO356_18910 0.10 +0.2
4,250,960 - AO356_18910 0.10 -0.6
4,250,960 - AO356_18910 0.10 -0.7
4,250,960 - AO356_18910 0.10 -1.3
4,250,960 - AO356_18910 0.10 -2.9
4,250,960 - AO356_18910 0.10 -1.2
4,250,982 + AO356_18910 0.13 +0.4
4,250,982 + AO356_18910 0.13 +0.3
4,250,982 + AO356_18910 0.13 -0.2
4,250,983 - AO356_18910 0.13 -2.6
4,251,118 + AO356_18910 0.29 -0.1
4,251,119 - AO356_18910 0.29 -0.8
4,251,119 - AO356_18910 0.29 -0.9
4,251,131 + AO356_18910 0.31 -2.8
4,251,131 + AO356_18910 0.31 -0.9
4,251,131 + AO356_18910 0.31 +0.6
4,251,131 + AO356_18910 0.31 -0.8
4,251,132 - AO356_18910 0.31 -1.2
4,251,132 - AO356_18910 0.31 -0.2
4,251,227 - AO356_18910 0.43 -1.8
4,251,330 + AO356_18910 0.55 -1.5
4,251,331 - AO356_18910 0.55 -2.3
4,251,350 - AO356_18910 0.57 -1.7
4,251,401 - AO356_18910 0.64 -1.3
4,251,401 - AO356_18910 0.64 -0.6
4,251,401 - AO356_18910 0.64 -0.2
4,251,490 + AO356_18910 0.74 -2.9
4,251,490 + AO356_18910 0.74 -0.8
4,251,490 + AO356_18910 0.74 +0.9
4,251,490 + AO356_18910 0.74 -1.0
4,251,491 - AO356_18910 0.74 -0.2
4,251,491 - AO356_18910 0.74 -1.4
4,251,491 - AO356_18910 0.74 -0.7
4,251,491 - AO356_18910 0.74 -0.5
4,251,491 - AO356_18910 0.74 -0.6
4,251,541 + AO356_18910 0.80 -0.8
4,251,541 + AO356_18910 0.80 -3.2
4,251,541 + AO356_18910 0.80 -1.4
4,251,541 + AO356_18910 0.80 -1.0
4,251,542 - AO356_18910 0.81 -0.6
4,251,542 - AO356_18910 0.81 -1.2
4,251,542 - AO356_18910 0.81 -0.4
4,251,542 - AO356_18910 0.81 -1.3
4,251,579 + AO356_18910 0.85 -0.2
4,251,586 - AO356_18910 0.86 -0.4
4,251,607 + AO356_18910 0.88 -0.7
4,251,688 + -1.1
4,251,688 + -1.2
4,251,689 - -2.4
4,251,689 - -1.9
4,251,689 - -0.9
4,251,754 + +0.1
4,251,907 + -2.0
4,252,015 + +0.6
4,252,015 + -0.1
4,252,015 + +0.1
4,252,016 - +0.5
4,252,016 - -0.6
4,252,016 - +1.2
4,252,016 - +0.1
4,252,016 - -0.3
4,252,016 - +0.1
4,252,016 - +0.5
4,252,016 - +0.1
4,252,016 - -0.1
4,252,019 + +0.2
4,252,020 - -0.1
4,252,065 + +0.1
4,252,159 + AO356_18915 0.27 +0.1
4,252,159 + AO356_18915 0.27 +0.8
4,252,160 - AO356_18915 0.27 +0.6
4,252,160 - AO356_18915 0.27 +1.4
4,252,160 - AO356_18915 0.27 -0.2
4,252,160 - AO356_18915 0.27 -0.2
4,252,258 - AO356_18915 0.51 +0.3
4,252,300 + AO356_18915 0.62 +0.3
4,252,300 + AO356_18915 0.62 +0.4
4,252,301 - AO356_18915 0.62 +0.4
4,252,301 - AO356_18915 0.62 -1.0
4,252,301 - AO356_18915 0.62 +0.3
4,252,366 + AO356_18915 0.78 +0.5
4,252,367 - AO356_18915 0.78 -0.9
4,252,367 - AO356_18915 0.78 +0.7
4,252,416 + +0.8
4,252,416 + +0.5
4,252,453 + -0.2
4,252,453 + -0.1
4,252,454 - +0.8
4,252,454 - +0.4
4,252,454 - +1.1
4,252,454 - +0.3
4,252,471 - +1.1
4,252,475 + +0.4
4,252,475 + -0.1
4,252,475 + +0.2
4,252,476 - +0.9
4,252,582 + AO356_18920 0.28 +0.3
4,252,582 + AO356_18920 0.28 -0.1
4,252,583 - AO356_18920 0.28 +0.8
4,252,583 - AO356_18920 0.28 +1.2
4,252,583 - AO356_18920 0.28 +0.4
4,252,583 - AO356_18920 0.28 +0.2
4,252,682 + AO356_18920 0.50 +0.5
4,252,682 + AO356_18920 0.50 +0.1
4,252,683 - AO356_18920 0.50 +0.1

Or see this region's nucleotide sequence