Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18745

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18740 and AO356_18745 are separated by 255 nucleotidesAO356_18745 and AO356_18750 are separated by 69 nucleotidesAO356_18750 and AO356_18755 are separated by 12 nucleotides AO356_18740: AO356_18740 - succinylglutamate-semialdehyde dehydrogenase, at 4,210,070 to 4,211,536 _18740 AO356_18745: AO356_18745 - succinylarginine dihydrolase, at 4,211,792 to 4,213,138 _18745 AO356_18750: AO356_18750 - topoisomerase II, at 4,213,208 to 4,213,495 _18750 AO356_18755: AO356_18755 - succinylglutamate desuccinylase, at 4,213,508 to 4,214,515 _18755 Position (kb) 4211 4212 4213 4214Strain fitness (log2 ratio) -2 -1 0 1at 4211.266 kb on + strand, within AO356_18740at 4211.267 kb on - strand, within AO356_18740at 4211.267 kb on - strand, within AO356_18740at 4211.267 kb on - strand, within AO356_18740at 4211.439 kb on - strandat 4211.439 kb on - strandat 4211.439 kb on - strandat 4211.439 kb on - strandat 4211.441 kb on + strandat 4211.441 kb on + strandat 4211.442 kb on - strandat 4211.453 kb on + strandat 4211.575 kb on - strandat 4211.697 kb on + strandat 4211.697 kb on + strandat 4211.697 kb on + strandat 4211.697 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.750 kb on - strandat 4211.750 kb on - strandat 4211.750 kb on - strandat 4211.760 kb on + strandat 4211.762 kb on + strandat 4211.763 kb on - strandat 4211.763 kb on - strandat 4211.801 kb on + strandat 4211.802 kb on - strandat 4211.823 kb on + strandat 4211.823 kb on + strandat 4211.824 kb on - strandat 4211.840 kb on - strandat 4211.840 kb on - strandat 4211.844 kb on - strandat 4211.844 kb on - strandat 4212.197 kb on + strand, within AO356_18745at 4212.197 kb on + strand, within AO356_18745at 4212.198 kb on - strand, within AO356_18745at 4212.198 kb on - strand, within AO356_18745at 4212.205 kb on + strand, within AO356_18745at 4212.205 kb on + strand, within AO356_18745at 4212.347 kb on + strand, within AO356_18745at 4212.422 kb on + strand, within AO356_18745at 4212.423 kb on - strand, within AO356_18745at 4212.497 kb on + strand, within AO356_18745at 4212.497 kb on + strand, within AO356_18745at 4212.497 kb on + strand, within AO356_18745at 4212.581 kb on + strand, within AO356_18745at 4212.581 kb on + strand, within AO356_18745at 4212.582 kb on - strand, within AO356_18745at 4212.582 kb on - strand, within AO356_18745at 4212.582 kb on - strand, within AO356_18745at 4212.582 kb on - strand, within AO356_18745at 4212.708 kb on + strand, within AO356_18745at 4212.709 kb on - strand, within AO356_18745at 4212.717 kb on - strand, within AO356_18745at 4212.717 kb on - strand, within AO356_18745at 4212.717 kb on - strand, within AO356_18745at 4212.717 kb on - strand, within AO356_18745at 4212.809 kb on + strand, within AO356_18745at 4212.810 kb on - strand, within AO356_18745at 4212.810 kb on - strand, within AO356_18745at 4212.961 kb on + strand, within AO356_18745at 4212.980 kb on + strand, within AO356_18745at 4213.102 kb on + strandat 4213.119 kb on - strandat 4213.157 kb on + strandat 4213.157 kb on + strandat 4213.157 kb on + strandat 4213.158 kb on - strandat 4213.158 kb on - strandat 4213.158 kb on - strandat 4213.201 kb on + strandat 4213.201 kb on + strandat 4213.202 kb on - strandat 4213.202 kb on - strandat 4213.202 kb on - strandat 4213.217 kb on - strandat 4213.373 kb on + strand, within AO356_18750at 4213.949 kb on + strand, within AO356_18755at 4214.111 kb on + strand, within AO356_18755at 4214.111 kb on + strand, within AO356_18755at 4214.111 kb on + strand, within AO356_18755at 4214.111 kb on + strand, within AO356_18755at 4214.112 kb on - strand, within AO356_18755at 4214.112 kb on - strand, within AO356_18755at 4214.113 kb on + strand, within AO356_18755at 4214.113 kb on + strand, within AO356_18755at 4214.113 kb on + strand, within AO356_18755at 4214.114 kb on - strand, within AO356_18755at 4214.117 kb on + strand, within AO356_18755at 4214.117 kb on + strand, within AO356_18755at 4214.117 kb on + strand, within AO356_18755at 4214.117 kb on + strand, within AO356_18755at 4214.118 kb on - strand, within AO356_18755at 4214.118 kb on - strand, within AO356_18755

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,211,266 + AO356_18740 0.82 +0.4
4,211,267 - AO356_18740 0.82 -0.7
4,211,267 - AO356_18740 0.82 -0.0
4,211,267 - AO356_18740 0.82 +0.2
4,211,439 - -0.8
4,211,439 - -0.2
4,211,439 - +0.9
4,211,439 - +1.0
4,211,441 + -0.6
4,211,441 + +0.0
4,211,442 - -0.1
4,211,453 + +0.5
4,211,575 - +0.5
4,211,697 + -0.1
4,211,697 + -0.8
4,211,697 + -0.8
4,211,697 + +0.4
4,211,749 + +1.1
4,211,749 + +0.4
4,211,749 + -0.2
4,211,750 - +0.0
4,211,750 - +0.6
4,211,750 - -1.3
4,211,760 + +1.0
4,211,762 + -0.6
4,211,763 - -1.1
4,211,763 - +0.9
4,211,801 + -1.0
4,211,802 - +0.4
4,211,823 + -0.4
4,211,823 + -0.7
4,211,824 - -0.8
4,211,840 - +0.0
4,211,840 - -0.5
4,211,844 - -0.7
4,211,844 - -0.3
4,212,197 + AO356_18745 0.30 +0.9
4,212,197 + AO356_18745 0.30 +0.7
4,212,198 - AO356_18745 0.30 -2.0
4,212,198 - AO356_18745 0.30 -2.0
4,212,205 + AO356_18745 0.31 -0.1
4,212,205 + AO356_18745 0.31 -0.4
4,212,347 + AO356_18745 0.41 -0.9
4,212,422 + AO356_18745 0.47 +0.2
4,212,423 - AO356_18745 0.47 -0.4
4,212,497 + AO356_18745 0.52 +0.0
4,212,497 + AO356_18745 0.52 -0.1
4,212,497 + AO356_18745 0.52 +0.4
4,212,581 + AO356_18745 0.59 -1.7
4,212,581 + AO356_18745 0.59 +0.5
4,212,582 - AO356_18745 0.59 +0.3
4,212,582 - AO356_18745 0.59 +0.1
4,212,582 - AO356_18745 0.59 +0.7
4,212,582 - AO356_18745 0.59 -0.7
4,212,708 + AO356_18745 0.68 +0.3
4,212,709 - AO356_18745 0.68 -1.2
4,212,717 - AO356_18745 0.69 -0.3
4,212,717 - AO356_18745 0.69 -0.1
4,212,717 - AO356_18745 0.69 -0.9
4,212,717 - AO356_18745 0.69 -1.4
4,212,809 + AO356_18745 0.76 -1.7
4,212,810 - AO356_18745 0.76 -0.5
4,212,810 - AO356_18745 0.76 -1.2
4,212,961 + AO356_18745 0.87 +0.4
4,212,980 + AO356_18745 0.88 -1.2
4,213,102 + -0.7
4,213,119 - -0.3
4,213,157 + -0.6
4,213,157 + -0.2
4,213,157 + +0.4
4,213,158 - +0.0
4,213,158 - +0.2
4,213,158 - +0.4
4,213,201 + -1.7
4,213,201 + -0.1
4,213,202 - +0.1
4,213,202 - -0.0
4,213,202 - +0.0
4,213,217 - +0.2
4,213,373 + AO356_18750 0.57 +1.5
4,213,949 + AO356_18755 0.44 +0.4
4,214,111 + AO356_18755 0.60 +0.2
4,214,111 + AO356_18755 0.60 +0.4
4,214,111 + AO356_18755 0.60 -0.2
4,214,111 + AO356_18755 0.60 +1.0
4,214,112 - AO356_18755 0.60 +1.0
4,214,112 - AO356_18755 0.60 +0.8
4,214,113 + AO356_18755 0.60 +0.3
4,214,113 + AO356_18755 0.60 +0.4
4,214,113 + AO356_18755 0.60 +0.6
4,214,114 - AO356_18755 0.60 -0.2
4,214,117 + AO356_18755 0.60 +0.4
4,214,117 + AO356_18755 0.60 +0.4
4,214,117 + AO356_18755 0.60 -0.4
4,214,117 + AO356_18755 0.60 +0.3
4,214,118 - AO356_18755 0.61 -0.6
4,214,118 - AO356_18755 0.61 +0.3

Or see this region's nucleotide sequence