Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14340

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_14330 and AO356_14335 are separated by 116 nucleotidesAO356_14335 and AO356_14340 overlap by 4 nucleotidesAO356_14340 and AO356_14345 overlap by 4 nucleotides AO356_14330: AO356_14330 - magnesium transporter ApaG, at 3,258,743 to 3,259,123 _14330 AO356_14335: AO356_14335 - rRNA methyltransferase, at 3,259,240 to 3,260,058 _14335 AO356_14340: AO356_14340 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 3,260,055 to 3,261,044 _14340 AO356_14345: AO356_14345 - molecular chaperone SurA, at 3,261,041 to 3,262,321 _14345 Position (kb) 3260 3261 3262Strain fitness (log2 ratio) -1 0 1at 3259.130 kb on - strandat 3259.130 kb on - strandat 3259.130 kb on - strandat 3259.130 kb on - strandat 3259.130 kb on - strandat 3259.130 kb on - strandat 3259.138 kb on - strandat 3259.179 kb on + strandat 3259.179 kb on + strandat 3259.180 kb on - strandat 3259.180 kb on - strandat 3259.180 kb on - strandat 3259.180 kb on - strandat 3259.188 kb on + strandat 3259.195 kb on + strandat 3259.198 kb on + strandat 3259.199 kb on - strandat 3259.199 kb on - strandat 3259.199 kb on - strandat 3259.214 kb on - strandat 3259.294 kb on + strandat 3259.327 kb on + strand, within AO356_14335at 3259.328 kb on - strand, within AO356_14335at 3259.484 kb on - strand, within AO356_14335at 3259.484 kb on - strand, within AO356_14335at 3259.572 kb on - strand, within AO356_14335at 3259.721 kb on + strand, within AO356_14335at 3259.722 kb on - strand, within AO356_14335at 3259.722 kb on - strand, within AO356_14335at 3259.722 kb on - strand, within AO356_14335at 3259.722 kb on - strand, within AO356_14335at 3259.770 kb on + strand, within AO356_14335at 3260.045 kb on + strandat 3260.046 kb on - strandat 3260.058 kb on + strandat 3260.058 kb on + strandat 3260.059 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
3,259,130 - +0.2
3,259,130 - +1.2
3,259,130 - +0.0
3,259,130 - -0.4
3,259,130 - -0.3
3,259,130 - +0.8
3,259,138 - -1.0
3,259,179 + +0.5
3,259,179 + +0.5
3,259,180 - +0.2
3,259,180 - +0.6
3,259,180 - -0.8
3,259,180 - +0.9
3,259,188 + -0.5
3,259,195 + +1.1
3,259,198 + -0.4
3,259,199 - -0.1
3,259,199 - -1.3
3,259,199 - +1.4
3,259,214 - -0.9
3,259,294 + +0.2
3,259,327 + AO356_14335 0.11 +0.5
3,259,328 - AO356_14335 0.11 +1.4
3,259,484 - AO356_14335 0.30 -0.6
3,259,484 - AO356_14335 0.30 +1.4
3,259,572 - AO356_14335 0.41 +0.3
3,259,721 + AO356_14335 0.59 -1.1
3,259,722 - AO356_14335 0.59 -0.6
3,259,722 - AO356_14335 0.59 +0.2
3,259,722 - AO356_14335 0.59 +0.5
3,259,722 - AO356_14335 0.59 +0.7
3,259,770 + AO356_14335 0.65 +1.0
3,260,045 + +0.2
3,260,046 - +0.7
3,260,058 + -0.5
3,260,058 + +0.5
3,260,059 - -0.6

Or see this region's nucleotide sequence