Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11735

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11730 and AO356_11735 are separated by 206 nucleotidesAO356_11735 and AO356_11740 are separated by 1 nucleotides AO356_11730: AO356_11730 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 2,656,114 to 2,657,481 _11730 AO356_11735: AO356_11735 - XRE family transcriptional regulator, at 2,657,688 to 2,658,464 _11735 AO356_11740: AO356_11740 - glucosamine--fructose-6-phosphate aminotransferase, at 2,658,466 to 2,660,298 _11740 Position (kb) 2657 2658 2659Strain fitness (log2 ratio) -1 0 1at 2657.479 kb on + strandat 2657.479 kb on + strandat 2657.528 kb on + strandat 2657.528 kb on + strandat 2657.528 kb on + strandat 2657.529 kb on - strandat 2657.529 kb on - strandat 2657.529 kb on - strandat 2657.529 kb on - strandat 2657.535 kb on + strandat 2657.535 kb on + strandat 2657.535 kb on + strandat 2657.536 kb on - strandat 2657.544 kb on - strandat 2657.544 kb on - strandat 2657.544 kb on - strandat 2657.702 kb on + strandat 2657.702 kb on + strandat 2657.798 kb on + strand, within AO356_11735at 2657.916 kb on + strand, within AO356_11735at 2657.916 kb on + strand, within AO356_11735at 2658.230 kb on + strand, within AO356_11735at 2658.394 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,657,479 + +0.4
2,657,479 + +0.1
2,657,528 + +0.0
2,657,528 + +1.1
2,657,528 + +0.9
2,657,529 - -0.2
2,657,529 - +0.7
2,657,529 - +0.4
2,657,529 - +0.8
2,657,535 + +0.0
2,657,535 + +0.5
2,657,535 + -1.0
2,657,536 - -0.1
2,657,544 - +0.5
2,657,544 - -0.8
2,657,544 - +1.2
2,657,702 + +0.3
2,657,702 + +0.2
2,657,798 + AO356_11735 0.14 +0.6
2,657,916 + AO356_11735 0.29 +0.5
2,657,916 + AO356_11735 0.29 +1.4
2,658,230 + AO356_11735 0.70 +0.3
2,658,394 + +0.4

Or see this region's nucleotide sequence