Strain Fitness in Rahnella sp. WP5 around EX31_RS24745

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24740 and EX31_RS24745 are separated by 161 nucleotidesEX31_RS24745 and EX31_RS24750 are separated by 131 nucleotides EX31_RS24740: EX31_RS24740 - ATP-dependent RNA helicase DbpA, at 718,120 to 719,502 _RS24740 EX31_RS24745: EX31_RS24745 - hypothetical protein, at 719,664 to 720,029 _RS24745 EX31_RS24750: EX31_RS24750 - prolyl oligopeptidase family serine peptidase, at 720,161 to 722,200 _RS24750 Position (kb) 719 720 721Strain fitness (log2 ratio) -2 -1 0 1 2 3at 718.736 kb on + strand, within EX31_RS24740at 718.767 kb on + strand, within EX31_RS24740at 718.767 kb on + strand, within EX31_RS24740at 718.831 kb on + strand, within EX31_RS24740at 718.831 kb on + strand, within EX31_RS24740at 718.832 kb on - strand, within EX31_RS24740at 718.837 kb on + strand, within EX31_RS24740at 718.866 kb on + strand, within EX31_RS24740at 719.043 kb on + strand, within EX31_RS24740at 719.044 kb on - strand, within EX31_RS24740at 719.044 kb on - strand, within EX31_RS24740at 719.064 kb on + strand, within EX31_RS24740at 719.068 kb on + strand, within EX31_RS24740at 719.069 kb on - strand, within EX31_RS24740at 719.069 kb on - strand, within EX31_RS24740at 719.197 kb on + strand, within EX31_RS24740at 719.198 kb on - strand, within EX31_RS24740at 719.198 kb on - strand, within EX31_RS24740at 719.214 kb on + strand, within EX31_RS24740at 719.283 kb on - strand, within EX31_RS24740at 719.385 kb on + strandat 719.404 kb on + strandat 719.404 kb on + strandat 719.404 kb on + strandat 719.404 kb on + strandat 719.404 kb on + strandat 719.404 kb on + strandat 719.404 kb on + strandat 719.405 kb on - strandat 719.405 kb on - strandat 719.467 kb on - strandat 719.491 kb on - strandat 719.572 kb on + strandat 719.576 kb on - strandat 719.602 kb on + strandat 719.602 kb on + strandat 719.603 kb on - strandat 719.603 kb on - strandat 719.606 kb on + strandat 719.613 kb on - strandat 719.855 kb on + strand, within EX31_RS24745at 719.855 kb on + strand, within EX31_RS24745at 719.855 kb on + strand, within EX31_RS24745at 719.933 kb on + strand, within EX31_RS24745at 719.966 kb on + strand, within EX31_RS24745at 719.966 kb on + strand, within EX31_RS24745at 719.967 kb on - strand, within EX31_RS24745at 720.012 kb on + strandat 720.012 kb on + strandat 720.013 kb on - strandat 720.025 kb on + strandat 720.077 kb on - strandat 720.208 kb on - strandat 720.208 kb on - strandat 720.208 kb on - strandat 720.229 kb on + strandat 720.230 kb on - strandat 720.233 kb on + strandat 720.233 kb on + strandat 720.234 kb on - strandat 720.281 kb on + strandat 720.302 kb on + strandat 720.303 kb on - strandat 720.304 kb on + strandat 720.305 kb on - strandat 720.305 kb on - strandat 720.350 kb on + strandat 720.370 kb on + strand, within EX31_RS24750at 720.398 kb on + strand, within EX31_RS24750at 720.399 kb on - strand, within EX31_RS24750at 720.458 kb on + strand, within EX31_RS24750at 720.459 kb on - strand, within EX31_RS24750at 720.617 kb on + strand, within EX31_RS24750at 720.618 kb on - strand, within EX31_RS24750at 720.719 kb on + strand, within EX31_RS24750at 720.719 kb on + strand, within EX31_RS24750at 720.719 kb on + strand, within EX31_RS24750at 720.719 kb on + strand, within EX31_RS24750at 720.720 kb on - strand, within EX31_RS24750at 720.720 kb on - strand, within EX31_RS24750at 720.720 kb on - strand, within EX31_RS24750at 720.720 kb on - strand, within EX31_RS24750at 720.722 kb on + strand, within EX31_RS24750at 720.723 kb on - strand, within EX31_RS24750at 720.723 kb on - strand, within EX31_RS24750at 720.809 kb on + strand, within EX31_RS24750at 720.809 kb on + strand, within EX31_RS24750at 720.810 kb on - strand, within EX31_RS24750at 720.867 kb on - strand, within EX31_RS24750at 720.978 kb on - strand, within EX31_RS24750at 721.007 kb on + strand, within EX31_RS24750

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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718,736 + EX31_RS24740 0.45 +1.9
718,767 + EX31_RS24740 0.47 +1.3
718,767 + EX31_RS24740 0.47 +0.4
718,831 + EX31_RS24740 0.51 -1.0
718,831 + EX31_RS24740 0.51 +0.8
718,832 - EX31_RS24740 0.51 +0.5
718,837 + EX31_RS24740 0.52 -0.3
718,866 + EX31_RS24740 0.54 -1.7
719,043 + EX31_RS24740 0.67 +1.1
719,044 - EX31_RS24740 0.67 +1.8
719,044 - EX31_RS24740 0.67 +0.1
719,064 + EX31_RS24740 0.68 +0.5
719,068 + EX31_RS24740 0.69 +0.0
719,069 - EX31_RS24740 0.69 -0.2
719,069 - EX31_RS24740 0.69 -0.2
719,197 + EX31_RS24740 0.78 +0.3
719,198 - EX31_RS24740 0.78 +0.8
719,198 - EX31_RS24740 0.78 +1.8
719,214 + EX31_RS24740 0.79 -1.5
719,283 - EX31_RS24740 0.84 +1.8
719,385 + -2.3
719,404 + +1.4
719,404 + +0.5
719,404 + +0.6
719,404 + +0.3
719,404 + -2.0
719,404 + +1.7
719,404 + +0.0
719,405 - +1.1
719,405 - -1.0
719,467 - +2.2
719,491 - -1.2
719,572 + +0.3
719,576 - +0.4
719,602 + -1.0
719,602 + +1.4
719,603 - +0.8
719,603 - -0.3
719,606 + +1.6
719,613 - +1.2
719,855 + EX31_RS24745 0.52 -1.0
719,855 + EX31_RS24745 0.52 -0.4
719,855 + EX31_RS24745 0.52 -1.2
719,933 + EX31_RS24745 0.73 -2.2
719,966 + EX31_RS24745 0.83 -1.7
719,966 + EX31_RS24745 0.83 +0.4
719,967 - EX31_RS24745 0.83 +0.1
720,012 + +0.0
720,012 + +0.1
720,013 - +1.2
720,025 + -0.5
720,077 - +0.3
720,208 - +0.8
720,208 - +0.8
720,208 - -2.0
720,229 + -2.2
720,230 - -0.7
720,233 + +0.8
720,233 + +1.7
720,234 - -0.4
720,281 + +1.2
720,302 + +1.3
720,303 - +1.8
720,304 + -0.4
720,305 - -0.7
720,305 - +0.8
720,350 + -1.2
720,370 + EX31_RS24750 0.10 +2.8
720,398 + EX31_RS24750 0.12 +2.6
720,399 - EX31_RS24750 0.12 +0.8
720,458 + EX31_RS24750 0.15 +0.1
720,459 - EX31_RS24750 0.15 +1.6
720,617 + EX31_RS24750 0.22 -1.3
720,618 - EX31_RS24750 0.22 -0.2
720,719 + EX31_RS24750 0.27 -0.9
720,719 + EX31_RS24750 0.27 -1.0
720,719 + EX31_RS24750 0.27 +0.4
720,719 + EX31_RS24750 0.27 +1.1
720,720 - EX31_RS24750 0.27 -0.4
720,720 - EX31_RS24750 0.27 -0.5
720,720 - EX31_RS24750 0.27 -0.7
720,720 - EX31_RS24750 0.27 +1.1
720,722 + EX31_RS24750 0.28 +1.2
720,723 - EX31_RS24750 0.28 -0.0
720,723 - EX31_RS24750 0.28 -0.7
720,809 + EX31_RS24750 0.32 +0.2
720,809 + EX31_RS24750 0.32 +0.5
720,810 - EX31_RS24750 0.32 -0.9
720,867 - EX31_RS24750 0.35 +0.3
720,978 - EX31_RS24750 0.40 +0.2
721,007 + EX31_RS24750 0.41 -0.7

Or see this region's nucleotide sequence