Strain Fitness in Rahnella sp. WP5 around EX31_RS23560

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23555 and EX31_RS23560 are separated by 207 nucleotidesEX31_RS23560 and EX31_RS23565 are separated by 151 nucleotides EX31_RS23555: EX31_RS23555 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 476,575 to 477,327 _RS23555 EX31_RS23560: EX31_RS23560 - phosphate starvation-inducible protein, at 477,535 to 477,867 _RS23560 EX31_RS23565: EX31_RS23565 - galactose-1-epimerase, at 478,019 to 479,065 _RS23565 Position (kb) 477 478Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 476.544 kb on - strandat 476.544 kb on - strandat 476.557 kb on - strandat 476.557 kb on - strandat 476.557 kb on - strandat 476.643 kb on - strandat 477.363 kb on - strandat 477.444 kb on - strandat 477.446 kb on + strandat 477.452 kb on + strandat 477.475 kb on - strandat 477.475 kb on - strandat 477.516 kb on + strandat 477.517 kb on - strandat 477.517 kb on - strandat 477.558 kb on + strandat 477.559 kb on - strandat 477.615 kb on + strand, within EX31_RS23560at 477.652 kb on - strand, within EX31_RS23560at 477.726 kb on + strand, within EX31_RS23560at 477.727 kb on - strand, within EX31_RS23560at 477.741 kb on + strand, within EX31_RS23560at 477.741 kb on + strand, within EX31_RS23560at 477.742 kb on - strand, within EX31_RS23560at 477.742 kb on - strand, within EX31_RS23560at 477.847 kb on + strandat 477.860 kb on - strandat 477.867 kb on + strandat 477.868 kb on - strandat 477.883 kb on + strandat 477.883 kb on + strandat 477.895 kb on + strandat 477.896 kb on - strandat 477.917 kb on + strandat 477.918 kb on - strandat 477.925 kb on + strandat 477.925 kb on + strandat 477.925 kb on + strandat 477.925 kb on + strandat 477.926 kb on - strandat 477.926 kb on - strandat 478.020 kb on + strandat 478.020 kb on + strandat 478.020 kb on + strandat 478.021 kb on - strandat 478.039 kb on - strandat 478.039 kb on - strandat 478.039 kb on - strandat 478.039 kb on - strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.054 kb on + strandat 478.055 kb on - strandat 478.055 kb on - strandat 478.055 kb on - strandat 478.055 kb on - strandat 478.055 kb on - strandat 478.055 kb on - strandat 478.055 kb on - strandat 478.055 kb on - strandat 478.055 kb on - strandat 478.056 kb on + strandat 478.056 kb on + strandat 478.056 kb on + strandat 478.056 kb on + strandat 478.056 kb on + strandat 478.057 kb on - strandat 478.057 kb on - strandat 478.057 kb on - strandat 478.057 kb on - strandat 478.152 kb on + strand, within EX31_RS23565at 478.153 kb on - strand, within EX31_RS23565at 478.161 kb on + strand, within EX31_RS23565at 478.162 kb on - strand, within EX31_RS23565at 478.209 kb on + strand, within EX31_RS23565at 478.210 kb on - strand, within EX31_RS23565at 478.210 kb on - strand, within EX31_RS23565at 478.210 kb on - strand, within EX31_RS23565at 478.210 kb on - strand, within EX31_RS23565at 478.234 kb on + strand, within EX31_RS23565at 478.235 kb on - strand, within EX31_RS23565at 478.235 kb on - strand, within EX31_RS23565at 478.320 kb on + strand, within EX31_RS23565at 478.321 kb on - strand, within EX31_RS23565at 478.321 kb on - strand, within EX31_RS23565at 478.321 kb on - strand, within EX31_RS23565at 478.333 kb on - strand, within EX31_RS23565at 478.333 kb on - strand, within EX31_RS23565at 478.533 kb on + strand, within EX31_RS23565at 478.533 kb on + strand, within EX31_RS23565at 478.533 kb on + strand, within EX31_RS23565at 478.534 kb on - strand, within EX31_RS23565at 478.567 kb on + strand, within EX31_RS23565at 478.620 kb on + strand, within EX31_RS23565at 478.623 kb on + strand, within EX31_RS23565at 478.624 kb on - strand, within EX31_RS23565at 478.715 kb on - strand, within EX31_RS23565at 478.715 kb on - strand, within EX31_RS23565at 478.826 kb on - strand, within EX31_RS23565at 478.837 kb on - strand, within EX31_RS23565at 478.860 kb on + strand, within EX31_RS23565

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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476,544 - -0.1
476,544 - +0.1
476,557 - -0.5
476,557 - +1.6
476,557 - +0.4
476,643 - +0.8
477,363 - -0.2
477,444 - +0.8
477,446 + -1.0
477,452 + +0.5
477,475 - -2.0
477,475 - +0.4
477,516 + -1.0
477,517 - -3.1
477,517 - -0.1
477,558 + +2.4
477,559 - -0.8
477,615 + EX31_RS23560 0.24 +0.2
477,652 - EX31_RS23560 0.35 -0.4
477,726 + EX31_RS23560 0.57 -2.0
477,727 - EX31_RS23560 0.58 -0.2
477,741 + EX31_RS23560 0.62 -1.0
477,741 + EX31_RS23560 0.62 -0.3
477,742 - EX31_RS23560 0.62 -0.9
477,742 - EX31_RS23560 0.62 -0.2
477,847 + +0.8
477,860 - -1.2
477,867 + +1.0
477,868 - -0.9
477,883 + +1.8
477,883 + -0.8
477,895 + -1.5
477,896 - -1.5
477,917 + -0.4
477,918 - +0.0
477,925 + -1.4
477,925 + -2.3
477,925 + -0.8
477,925 + -2.2
477,926 - -0.6
477,926 - +1.0
478,020 + -0.2
478,020 + +0.2
478,020 + +1.2
478,021 - +1.5
478,039 - -0.2
478,039 - +0.2
478,039 - +1.2
478,039 - +0.8
478,054 + +0.8
478,054 + +0.1
478,054 + -0.5
478,054 + +0.8
478,054 + -1.5
478,054 + -1.0
478,054 + -0.2
478,054 + +1.2
478,054 + -0.2
478,054 + -0.4
478,054 + +0.4
478,054 + -1.2
478,054 + +0.2
478,054 + +0.2
478,055 - +0.3
478,055 - +2.4
478,055 - +0.1
478,055 - +0.4
478,055 - -0.2
478,055 - +1.5
478,055 - -0.2
478,055 - -1.5
478,055 - +0.4
478,056 + +0.5
478,056 + -0.8
478,056 + -0.2
478,056 + -0.3
478,056 + -0.0
478,057 - -0.1
478,057 - -0.8
478,057 - -0.4
478,057 - -2.0
478,152 + EX31_RS23565 0.13 +0.8
478,153 - EX31_RS23565 0.13 +2.8
478,161 + EX31_RS23565 0.14 +1.6
478,162 - EX31_RS23565 0.14 +0.6
478,209 + EX31_RS23565 0.18 +2.2
478,210 - EX31_RS23565 0.18 -0.8
478,210 - EX31_RS23565 0.18 -1.3
478,210 - EX31_RS23565 0.18 +0.8
478,210 - EX31_RS23565 0.18 +1.4
478,234 + EX31_RS23565 0.21 +0.2
478,235 - EX31_RS23565 0.21 -0.7
478,235 - EX31_RS23565 0.21 +0.8
478,320 + EX31_RS23565 0.29 +2.4
478,321 - EX31_RS23565 0.29 +0.4
478,321 - EX31_RS23565 0.29 +0.8
478,321 - EX31_RS23565 0.29 -2.2
478,333 - EX31_RS23565 0.30 +1.5
478,333 - EX31_RS23565 0.30 +0.8
478,533 + EX31_RS23565 0.49 +0.2
478,533 + EX31_RS23565 0.49 +0.4
478,533 + EX31_RS23565 0.49 +0.4
478,534 - EX31_RS23565 0.49 +0.8
478,567 + EX31_RS23565 0.52 -0.6
478,620 + EX31_RS23565 0.57 +0.1
478,623 + EX31_RS23565 0.58 +0.8
478,624 - EX31_RS23565 0.58 -0.2
478,715 - EX31_RS23565 0.66 -0.2
478,715 - EX31_RS23565 0.66 +0.2
478,826 - EX31_RS23565 0.77 -0.2
478,837 - EX31_RS23565 0.78 +0.4
478,860 + EX31_RS23565 0.80 +0.7

Or see this region's nucleotide sequence