Strain Fitness in Rahnella sp. WP5 around EX31_RS22020

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22010 and EX31_RS22015 overlap by 4 nucleotidesEX31_RS22015 and EX31_RS22020 are separated by 41 nucleotidesEX31_RS22020 and EX31_RS22025 are separated by 11 nucleotides EX31_RS22010: EX31_RS22010 - AraC family transcriptional regulator, at 146,872 to 147,897 _RS22010 EX31_RS22015: EX31_RS22015 - ABC transporter ATP-binding protein, at 147,894 to 148,670 _RS22015 EX31_RS22020: EX31_RS22020 - ABC transporter permease, at 148,712 to 149,476 _RS22020 EX31_RS22025: EX31_RS22025 - ABC transporter substrate-binding protein, at 149,488 to 150,501 _RS22025 Position (kb) 148 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 147.718 kb on - strand, within EX31_RS22010at 147.760 kb on + strand, within EX31_RS22010at 147.760 kb on + strand, within EX31_RS22010at 147.761 kb on - strand, within EX31_RS22010at 147.761 kb on - strand, within EX31_RS22010at 147.761 kb on - strand, within EX31_RS22010at 147.761 kb on - strand, within EX31_RS22010at 147.806 kb on + strandat 147.806 kb on + strandat 147.807 kb on - strandat 147.811 kb on + strandat 148.041 kb on + strand, within EX31_RS22015at 148.063 kb on - strand, within EX31_RS22015at 148.098 kb on - strand, within EX31_RS22015at 148.098 kb on - strand, within EX31_RS22015at 148.098 kb on - strand, within EX31_RS22015at 148.098 kb on - strand, within EX31_RS22015at 148.098 kb on - strand, within EX31_RS22015at 148.098 kb on - strand, within EX31_RS22015at 148.128 kb on + strand, within EX31_RS22015at 148.129 kb on - strand, within EX31_RS22015at 148.261 kb on + strand, within EX31_RS22015at 148.261 kb on + strand, within EX31_RS22015at 148.262 kb on - strand, within EX31_RS22015at 148.262 kb on - strand, within EX31_RS22015at 148.262 kb on - strand, within EX31_RS22015at 148.353 kb on + strand, within EX31_RS22015at 148.354 kb on - strand, within EX31_RS22015at 148.412 kb on - strand, within EX31_RS22015at 148.426 kb on + strand, within EX31_RS22015at 148.427 kb on - strand, within EX31_RS22015at 148.427 kb on - strand, within EX31_RS22015at 148.427 kb on - strand, within EX31_RS22015at 148.478 kb on + strand, within EX31_RS22015at 148.479 kb on - strand, within EX31_RS22015at 148.479 kb on - strand, within EX31_RS22015at 148.512 kb on + strand, within EX31_RS22015at 148.523 kb on + strand, within EX31_RS22015at 148.523 kb on + strand, within EX31_RS22015at 148.523 kb on + strand, within EX31_RS22015at 148.589 kb on + strand, within EX31_RS22015at 148.591 kb on + strand, within EX31_RS22015at 148.591 kb on + strand, within EX31_RS22015at 148.591 kb on + strand, within EX31_RS22015at 148.591 kb on + strand, within EX31_RS22015at 148.591 kb on + strand, within EX31_RS22015at 148.592 kb on - strand, within EX31_RS22015at 148.660 kb on + strandat 148.682 kb on + strandat 148.682 kb on + strandat 148.683 kb on - strandat 148.683 kb on - strandat 148.683 kb on - strandat 148.683 kb on - strandat 148.684 kb on + strandat 148.684 kb on + strandat 148.685 kb on - strandat 148.809 kb on + strand, within EX31_RS22020at 148.809 kb on + strand, within EX31_RS22020at 148.809 kb on + strand, within EX31_RS22020at 148.809 kb on + strand, within EX31_RS22020at 148.809 kb on + strand, within EX31_RS22020at 148.809 kb on + strand, within EX31_RS22020at 148.809 kb on + strand, within EX31_RS22020at 148.809 kb on + strand, within EX31_RS22020at 148.810 kb on - strand, within EX31_RS22020at 148.810 kb on - strand, within EX31_RS22020at 148.810 kb on - strand, within EX31_RS22020at 148.810 kb on - strand, within EX31_RS22020at 148.810 kb on - strand, within EX31_RS22020at 148.810 kb on - strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.813 kb on + strand, within EX31_RS22020at 148.814 kb on - strand, within EX31_RS22020at 148.814 kb on - strand, within EX31_RS22020at 148.814 kb on - strand, within EX31_RS22020at 148.825 kb on + strand, within EX31_RS22020at 148.826 kb on - strand, within EX31_RS22020at 148.984 kb on + strand, within EX31_RS22020at 149.006 kb on + strand, within EX31_RS22020at 149.007 kb on - strand, within EX31_RS22020at 149.053 kb on - strand, within EX31_RS22020at 149.119 kb on + strand, within EX31_RS22020at 149.137 kb on + strand, within EX31_RS22020at 149.137 kb on + strand, within EX31_RS22020at 149.137 kb on + strand, within EX31_RS22020at 149.137 kb on + strand, within EX31_RS22020at 149.138 kb on - strand, within EX31_RS22020at 149.138 kb on - strand, within EX31_RS22020at 149.138 kb on - strand, within EX31_RS22020at 149.138 kb on - strand, within EX31_RS22020at 149.253 kb on - strand, within EX31_RS22020at 149.451 kb on - strandat 149.451 kb on - strandat 149.498 kb on + strandat 149.499 kb on - strandat 149.559 kb on - strandat 149.604 kb on - strand, within EX31_RS22025at 149.604 kb on - strand, within EX31_RS22025at 149.604 kb on - strand, within EX31_RS22025at 149.686 kb on - strand, within EX31_RS22025at 149.724 kb on - strand, within EX31_RS22025at 149.828 kb on + strand, within EX31_RS22025at 149.828 kb on + strand, within EX31_RS22025at 149.829 kb on - strand, within EX31_RS22025at 149.829 kb on - strand, within EX31_RS22025at 149.829 kb on - strand, within EX31_RS22025at 149.829 kb on - strand, within EX31_RS22025at 149.904 kb on + strand, within EX31_RS22025at 149.904 kb on + strand, within EX31_RS22025at 149.904 kb on + strand, within EX31_RS22025at 149.904 kb on + strand, within EX31_RS22025at 149.904 kb on + strand, within EX31_RS22025at 149.904 kb on + strand, within EX31_RS22025at 149.904 kb on + strand, within EX31_RS22025at 149.904 kb on + strand, within EX31_RS22025at 149.905 kb on - strand, within EX31_RS22025at 149.905 kb on - strand, within EX31_RS22025at 149.905 kb on - strand, within EX31_RS22025at 149.905 kb on - strand, within EX31_RS22025at 149.905 kb on - strand, within EX31_RS22025at 149.905 kb on - strand, within EX31_RS22025at 149.905 kb on - strand, within EX31_RS22025at 149.907 kb on - strand, within EX31_RS22025at 149.907 kb on - strand, within EX31_RS22025at 149.907 kb on - strand, within EX31_RS22025at 149.908 kb on + strand, within EX31_RS22025at 149.908 kb on + strand, within EX31_RS22025at 149.908 kb on + strand, within EX31_RS22025at 149.908 kb on + strand, within EX31_RS22025at 149.908 kb on + strand, within EX31_RS22025at 149.909 kb on - strand, within EX31_RS22025at 149.909 kb on - strand, within EX31_RS22025at 150.003 kb on + strand, within EX31_RS22025at 150.072 kb on + strand, within EX31_RS22025at 150.072 kb on + strand, within EX31_RS22025at 150.072 kb on + strand, within EX31_RS22025at 150.073 kb on - strand, within EX31_RS22025at 150.073 kb on - strand, within EX31_RS22025at 150.073 kb on - strand, within EX31_RS22025at 150.112 kb on + strand, within EX31_RS22025at 150.113 kb on - strand, within EX31_RS22025at 150.113 kb on - strand, within EX31_RS22025at 150.123 kb on + strand, within EX31_RS22025at 150.123 kb on + strand, within EX31_RS22025at 150.124 kb on - strand, within EX31_RS22025at 150.139 kb on - strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.329 kb on + strand, within EX31_RS22025at 150.330 kb on - strand, within EX31_RS22025at 150.330 kb on - strand, within EX31_RS22025at 150.330 kb on - strand, within EX31_RS22025at 150.330 kb on - strand, within EX31_RS22025at 150.330 kb on - strand, within EX31_RS22025at 150.330 kb on - strand, within EX31_RS22025

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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147,718 - EX31_RS22010 0.82 -0.9
147,760 + EX31_RS22010 0.87 +0.4
147,760 + EX31_RS22010 0.87 +0.6
147,761 - EX31_RS22010 0.87 +0.9
147,761 - EX31_RS22010 0.87 +0.2
147,761 - EX31_RS22010 0.87 +0.9
147,761 - EX31_RS22010 0.87 +1.1
147,806 + +0.9
147,806 + +0.1
147,807 - -0.2
147,811 + +1.3
148,041 + EX31_RS22015 0.19 +1.3
148,063 - EX31_RS22015 0.22 -0.3
148,098 - EX31_RS22015 0.26 +0.6
148,098 - EX31_RS22015 0.26 -0.5
148,098 - EX31_RS22015 0.26 -0.3
148,098 - EX31_RS22015 0.26 -0.9
148,098 - EX31_RS22015 0.26 -0.5
148,098 - EX31_RS22015 0.26 +0.2
148,128 + EX31_RS22015 0.30 -0.1
148,129 - EX31_RS22015 0.30 -0.2
148,261 + EX31_RS22015 0.47 +0.5
148,261 + EX31_RS22015 0.47 +3.1
148,262 - EX31_RS22015 0.47 +0.4
148,262 - EX31_RS22015 0.47 -0.3
148,262 - EX31_RS22015 0.47 +0.5
148,353 + EX31_RS22015 0.59 +0.7
148,354 - EX31_RS22015 0.59 -0.7
148,412 - EX31_RS22015 0.67 -0.5
148,426 + EX31_RS22015 0.68 +0.1
148,427 - EX31_RS22015 0.69 +1.5
148,427 - EX31_RS22015 0.69 -0.1
148,427 - EX31_RS22015 0.69 +0.2
148,478 + EX31_RS22015 0.75 +2.2
148,479 - EX31_RS22015 0.75 -0.8
148,479 - EX31_RS22015 0.75 +0.8
148,512 + EX31_RS22015 0.80 +1.2
148,523 + EX31_RS22015 0.81 +0.9
148,523 + EX31_RS22015 0.81 -1.9
148,523 + EX31_RS22015 0.81 -1.4
148,589 + EX31_RS22015 0.89 -1.0
148,591 + EX31_RS22015 0.90 -0.5
148,591 + EX31_RS22015 0.90 +0.2
148,591 + EX31_RS22015 0.90 -0.6
148,591 + EX31_RS22015 0.90 -0.8
148,591 + EX31_RS22015 0.90 +0.5
148,592 - EX31_RS22015 0.90 -1.1
148,660 + +1.4
148,682 + +0.5
148,682 + -0.6
148,683 - +0.4
148,683 - -2.1
148,683 - -1.1
148,683 - -0.2
148,684 + -0.6
148,684 + +0.1
148,685 - +0.5
148,809 + EX31_RS22020 0.13 +1.4
148,809 + EX31_RS22020 0.13 +1.9
148,809 + EX31_RS22020 0.13 +1.5
148,809 + EX31_RS22020 0.13 +2.5
148,809 + EX31_RS22020 0.13 -0.1
148,809 + EX31_RS22020 0.13 -0.5
148,809 + EX31_RS22020 0.13 +0.9
148,809 + EX31_RS22020 0.13 -0.4
148,810 - EX31_RS22020 0.13 -2.1
148,810 - EX31_RS22020 0.13 +0.7
148,810 - EX31_RS22020 0.13 -0.4
148,810 - EX31_RS22020 0.13 -1.5
148,810 - EX31_RS22020 0.13 +1.8
148,810 - EX31_RS22020 0.13 -3.2
148,813 + EX31_RS22020 0.13 +0.4
148,813 + EX31_RS22020 0.13 +0.2
148,813 + EX31_RS22020 0.13 -0.7
148,813 + EX31_RS22020 0.13 +0.2
148,813 + EX31_RS22020 0.13 -0.0
148,813 + EX31_RS22020 0.13 +0.4
148,813 + EX31_RS22020 0.13 +0.4
148,813 + EX31_RS22020 0.13 -0.9
148,813 + EX31_RS22020 0.13 -1.4
148,813 + EX31_RS22020 0.13 +1.1
148,813 + EX31_RS22020 0.13 -0.4
148,814 - EX31_RS22020 0.13 +0.4
148,814 - EX31_RS22020 0.13 -0.4
148,814 - EX31_RS22020 0.13 +0.9
148,825 + EX31_RS22020 0.15 +1.4
148,826 - EX31_RS22020 0.15 +0.2
148,984 + EX31_RS22020 0.36 +0.2
149,006 + EX31_RS22020 0.38 +0.6
149,007 - EX31_RS22020 0.39 +0.8
149,053 - EX31_RS22020 0.45 +1.4
149,119 + EX31_RS22020 0.53 +0.5
149,137 + EX31_RS22020 0.56 +0.9
149,137 + EX31_RS22020 0.56 +1.4
149,137 + EX31_RS22020 0.56 -0.3
149,137 + EX31_RS22020 0.56 +0.1
149,138 - EX31_RS22020 0.56 -0.6
149,138 - EX31_RS22020 0.56 +0.2
149,138 - EX31_RS22020 0.56 +0.8
149,138 - EX31_RS22020 0.56 +0.9
149,253 - EX31_RS22020 0.71 -0.2
149,451 - -0.6
149,451 - +0.9
149,498 + +0.7
149,499 - -1.1
149,559 - +0.9
149,604 - EX31_RS22025 0.11 +1.9
149,604 - EX31_RS22025 0.11 -2.5
149,604 - EX31_RS22025 0.11 +1.3
149,686 - EX31_RS22025 0.20 +0.4
149,724 - EX31_RS22025 0.23 +0.4
149,828 + EX31_RS22025 0.34 +0.7
149,828 + EX31_RS22025 0.34 -1.9
149,829 - EX31_RS22025 0.34 -0.1
149,829 - EX31_RS22025 0.34 -2.2
149,829 - EX31_RS22025 0.34 -0.3
149,829 - EX31_RS22025 0.34 +1.4
149,904 + EX31_RS22025 0.41 +0.9
149,904 + EX31_RS22025 0.41 +1.4
149,904 + EX31_RS22025 0.41 +1.9
149,904 + EX31_RS22025 0.41 +0.0
149,904 + EX31_RS22025 0.41 -0.1
149,904 + EX31_RS22025 0.41 +0.1
149,904 + EX31_RS22025 0.41 +0.9
149,904 + EX31_RS22025 0.41 -1.1
149,905 - EX31_RS22025 0.41 +0.4
149,905 - EX31_RS22025 0.41 -0.1
149,905 - EX31_RS22025 0.41 +2.3
149,905 - EX31_RS22025 0.41 -0.6
149,905 - EX31_RS22025 0.41 -0.2
149,905 - EX31_RS22025 0.41 -0.6
149,905 - EX31_RS22025 0.41 -0.6
149,907 - EX31_RS22025 0.41 +0.9
149,907 - EX31_RS22025 0.41 -0.8
149,907 - EX31_RS22025 0.41 +0.9
149,908 + EX31_RS22025 0.41 -0.4
149,908 + EX31_RS22025 0.41 -0.6
149,908 + EX31_RS22025 0.41 -0.1
149,908 + EX31_RS22025 0.41 +0.8
149,908 + EX31_RS22025 0.41 -1.1
149,909 - EX31_RS22025 0.42 -0.6
149,909 - EX31_RS22025 0.42 -2.0
150,003 + EX31_RS22025 0.51 -0.6
150,072 + EX31_RS22025 0.58 +0.8
150,072 + EX31_RS22025 0.58 +1.2
150,072 + EX31_RS22025 0.58 -1.0
150,073 - EX31_RS22025 0.58 -0.1
150,073 - EX31_RS22025 0.58 -2.7
150,073 - EX31_RS22025 0.58 +1.8
150,112 + EX31_RS22025 0.62 +0.7
150,113 - EX31_RS22025 0.62 +0.0
150,113 - EX31_RS22025 0.62 +0.1
150,123 + EX31_RS22025 0.63 -0.9
150,123 + EX31_RS22025 0.63 -0.5
150,124 - EX31_RS22025 0.63 +0.7
150,139 - EX31_RS22025 0.64 +1.3
150,329 + EX31_RS22025 0.83 +1.0
150,329 + EX31_RS22025 0.83 +0.3
150,329 + EX31_RS22025 0.83 +0.5
150,329 + EX31_RS22025 0.83 -0.6
150,329 + EX31_RS22025 0.83 -2.2
150,329 + EX31_RS22025 0.83 +2.1
150,329 + EX31_RS22025 0.83 -1.4
150,329 + EX31_RS22025 0.83 +0.1
150,329 + EX31_RS22025 0.83 -0.5
150,330 - EX31_RS22025 0.83 -0.3
150,330 - EX31_RS22025 0.83 -0.6
150,330 - EX31_RS22025 0.83 +0.2
150,330 - EX31_RS22025 0.83 +0.9
150,330 - EX31_RS22025 0.83 +0.4
150,330 - EX31_RS22025 0.83 -1.1

Or see this region's nucleotide sequence