Strain Fitness in Rahnella sp. WP5 around EX31_RS21415

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21410 and EX31_RS21415 are separated by 129 nucleotidesEX31_RS21415 and EX31_RS21420 are separated by 136 nucleotides EX31_RS21410: EX31_RS21410 - phosphoglycerate kinase, at 22,036 to 23,199 _RS21410 EX31_RS21415: EX31_RS21415 - class II fructose-bisphosphate aldolase, at 23,329 to 24,408 _RS21415 EX31_RS21420: EX31_RS21420 - LacI family DNA-binding transcriptional regulator, at 24,545 to 25,627 _RS21420 Position (kb) 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 23.190 kb on + strandat 23.190 kb on + strandat 23.197 kb on + strandat 23.197 kb on + strandat 23.197 kb on + strandat 23.220 kb on + strandat 23.220 kb on + strandat 23.220 kb on + strandat 23.220 kb on + strandat 23.278 kb on + strandat 23.278 kb on + strandat 23.278 kb on + strandat 23.300 kb on + strandat 23.300 kb on + strandat 23.313 kb on + strandat 23.313 kb on + strandat 24.401 kb on + strandat 24.401 kb on + strandat 24.401 kb on + strandat 24.401 kb on + strandat 24.401 kb on + strandat 24.402 kb on - strandat 24.402 kb on - strandat 24.406 kb on + strandat 24.406 kb on + strandat 24.406 kb on + strandat 24.406 kb on + strandat 24.406 kb on + strandat 24.406 kb on + strandat 24.407 kb on - strandat 24.414 kb on - strandat 24.510 kb on - strandat 24.599 kb on + strandat 24.689 kb on + strand, within EX31_RS21420at 24.734 kb on + strand, within EX31_RS21420at 24.735 kb on - strand, within EX31_RS21420at 24.768 kb on + strand, within EX31_RS21420at 24.768 kb on + strand, within EX31_RS21420at 24.769 kb on - strand, within EX31_RS21420at 24.769 kb on - strand, within EX31_RS21420at 24.820 kb on - strand, within EX31_RS21420at 25.126 kb on - strand, within EX31_RS21420at 25.137 kb on + strand, within EX31_RS21420at 25.138 kb on - strand, within EX31_RS21420at 25.138 kb on - strand, within EX31_RS21420at 25.138 kb on - strand, within EX31_RS21420at 25.142 kb on + strand, within EX31_RS21420at 25.143 kb on - strand, within EX31_RS21420at 25.180 kb on + strand, within EX31_RS21420at 25.180 kb on + strand, within EX31_RS21420at 25.180 kb on + strand, within EX31_RS21420at 25.240 kb on - strand, within EX31_RS21420at 25.309 kb on - strand, within EX31_RS21420at 25.376 kb on - strand, within EX31_RS21420

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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23,190 + -0.9
23,190 + -0.8
23,197 + -0.8
23,197 + -0.2
23,197 + -0.1
23,220 + -1.4
23,220 + +0.3
23,220 + -1.6
23,220 + -1.2
23,278 + -1.0
23,278 + -2.1
23,278 + -1.5
23,300 + -0.6
23,300 + -1.8
23,313 + -1.6
23,313 + -0.6
24,401 + -1.2
24,401 + -2.9
24,401 + +0.4
24,401 + -2.4
24,401 + -0.8
24,402 - +0.9
24,402 - -0.1
24,406 + -0.6
24,406 + +1.5
24,406 + -1.9
24,406 + -2.0
24,406 + -0.9
24,406 + -1.1
24,407 - -0.1
24,414 - -3.1
24,510 - -0.2
24,599 + +0.9
24,689 + EX31_RS21420 0.13 -1.2
24,734 + EX31_RS21420 0.17 -1.1
24,735 - EX31_RS21420 0.18 +1.4
24,768 + EX31_RS21420 0.21 +0.7
24,768 + EX31_RS21420 0.21 +0.0
24,769 - EX31_RS21420 0.21 -0.1
24,769 - EX31_RS21420 0.21 +0.0
24,820 - EX31_RS21420 0.25 +0.4
25,126 - EX31_RS21420 0.54 -0.5
25,137 + EX31_RS21420 0.55 -0.1
25,138 - EX31_RS21420 0.55 -0.9
25,138 - EX31_RS21420 0.55 -1.2
25,138 - EX31_RS21420 0.55 -0.5
25,142 + EX31_RS21420 0.55 +2.5
25,143 - EX31_RS21420 0.55 +0.2
25,180 + EX31_RS21420 0.59 -0.6
25,180 + EX31_RS21420 0.59 -1.4
25,180 + EX31_RS21420 0.59 +0.3
25,240 - EX31_RS21420 0.64 +0.5
25,309 - EX31_RS21420 0.71 -1.1
25,376 - EX31_RS21420 0.77 -1.1

Or see this region's nucleotide sequence