Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20370 and EX31_RS20375 are separated by 272 nucleotides EX31_RS20375 and EX31_RS20380 are separated by 90 nucleotides EX31_RS20380 and EX31_RS20385 are separated by 122 nucleotides
EX31_RS20370: EX31_RS20370 - MFS transporter, at 706,504 to 707,913
_RS20370
EX31_RS20375: EX31_RS20375 - helix-turn-helix transcriptional regulator, at 708,186 to 709,022
_RS20375
EX31_RS20380: EX31_RS20380 - GntR family transcriptional regulator, at 709,113 to 709,799
_RS20380
EX31_RS20385: EX31_RS20385 - hypothetical protein, at 709,922 to 710,770
_RS20385
Position (kb) 708
709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 707.296 kb on + strand, within EX31_RS20370 at 707.296 kb on + strand, within EX31_RS20370 at 707.326 kb on - strand, within EX31_RS20370 at 707.373 kb on + strand, within EX31_RS20370 at 707.374 kb on - strand, within EX31_RS20370 at 707.395 kb on + strand, within EX31_RS20370 at 707.395 kb on + strand, within EX31_RS20370 at 707.395 kb on + strand, within EX31_RS20370 at 707.396 kb on - strand, within EX31_RS20370 at 707.396 kb on - strand, within EX31_RS20370 at 707.396 kb on - strand, within EX31_RS20370 at 707.451 kb on + strand, within EX31_RS20370 at 707.452 kb on - strand, within EX31_RS20370 at 707.452 kb on - strand, within EX31_RS20370 at 707.452 kb on - strand, within EX31_RS20370 at 707.484 kb on + strand, within EX31_RS20370 at 707.486 kb on + strand, within EX31_RS20370 at 707.486 kb on + strand, within EX31_RS20370 at 707.487 kb on - strand, within EX31_RS20370 at 707.487 kb on - strand, within EX31_RS20370 at 707.487 kb on - strand, within EX31_RS20370 at 707.507 kb on + strand, within EX31_RS20370 at 707.507 kb on + strand, within EX31_RS20370 at 707.507 kb on + strand, within EX31_RS20370 at 707.508 kb on - strand, within EX31_RS20370 at 707.508 kb on - strand, within EX31_RS20370 at 707.508 kb on - strand, within EX31_RS20370 at 707.559 kb on + strand, within EX31_RS20370 at 707.603 kb on - strand, within EX31_RS20370 at 707.747 kb on + strand, within EX31_RS20370 at 707.747 kb on + strand, within EX31_RS20370 at 707.773 kb on - strand at 707.773 kb on - strand at 707.782 kb on - strand at 707.782 kb on - strand at 707.895 kb on + strand at 707.896 kb on - strand at 707.896 kb on - strand at 707.931 kb on - strand at 707.931 kb on - strand at 707.938 kb on + strand at 707.942 kb on + strand at 707.944 kb on + strand at 707.951 kb on + strand at 707.967 kb on - strand at 707.976 kb on + strand at 707.983 kb on - strand at 708.001 kb on + strand at 708.149 kb on + strand at 708.149 kb on + strand at 708.150 kb on - strand at 708.182 kb on + strand at 708.182 kb on + strand at 708.183 kb on - strand at 708.183 kb on - strand at 708.183 kb on - strand at 708.183 kb on - strand at 708.183 kb on - strand at 708.183 kb on - strand at 708.301 kb on + strand, within EX31_RS20375 at 708.306 kb on + strand, within EX31_RS20375 at 708.307 kb on - strand, within EX31_RS20375 at 708.331 kb on + strand, within EX31_RS20375 at 708.377 kb on - strand, within EX31_RS20375 at 708.401 kb on + strand, within EX31_RS20375 at 708.401 kb on + strand, within EX31_RS20375 at 708.455 kb on + strand, within EX31_RS20375 at 708.467 kb on + strand, within EX31_RS20375 at 708.469 kb on + strand, within EX31_RS20375 at 708.469 kb on + strand, within EX31_RS20375 at 708.469 kb on + strand, within EX31_RS20375 at 708.470 kb on - strand, within EX31_RS20375 at 708.470 kb on - strand, within EX31_RS20375 at 708.470 kb on - strand, within EX31_RS20375 at 708.506 kb on - strand, within EX31_RS20375 at 708.512 kb on - strand, within EX31_RS20375 at 708.512 kb on - strand, within EX31_RS20375 at 708.530 kb on + strand, within EX31_RS20375 at 708.531 kb on - strand, within EX31_RS20375 at 708.557 kb on - strand, within EX31_RS20375 at 708.577 kb on + strand, within EX31_RS20375 at 708.577 kb on + strand, within EX31_RS20375 at 708.578 kb on - strand, within EX31_RS20375 at 708.579 kb on + strand, within EX31_RS20375 at 708.580 kb on - strand, within EX31_RS20375 at 708.625 kb on + strand, within EX31_RS20375 at 708.632 kb on - strand, within EX31_RS20375 at 708.696 kb on + strand, within EX31_RS20375 at 708.697 kb on - strand, within EX31_RS20375 at 708.773 kb on + strand, within EX31_RS20375 at 708.773 kb on + strand, within EX31_RS20375 at 708.774 kb on - strand, within EX31_RS20375 at 708.783 kb on + strand, within EX31_RS20375 at 708.783 kb on + strand, within EX31_RS20375 at 708.784 kb on - strand, within EX31_RS20375 at 708.839 kb on + strand, within EX31_RS20375 at 708.840 kb on - strand, within EX31_RS20375 at 708.872 kb on - strand, within EX31_RS20375 at 708.934 kb on - strand, within EX31_RS20375 at 708.953 kb on + strand at 708.953 kb on + strand at 708.966 kb on - strand at 708.982 kb on - strand at 708.994 kb on - strand at 709.007 kb on + strand at 709.007 kb on + strand at 709.007 kb on + strand at 709.007 kb on + strand at 709.007 kb on + strand at 709.007 kb on + strand at 709.009 kb on + strand at 709.009 kb on + strand at 709.009 kb on + strand at 709.009 kb on + strand at 709.009 kb on + strand at 709.009 kb on + strand at 709.010 kb on - strand at 709.010 kb on - strand at 709.010 kb on - strand at 709.010 kb on - strand at 709.010 kb on - strand at 709.073 kb on + strand at 709.073 kb on + strand at 709.073 kb on + strand at 709.074 kb on - strand at 709.076 kb on + strand at 709.096 kb on - strand at 709.139 kb on + strand at 709.139 kb on + strand at 709.164 kb on + strand at 709.165 kb on - strand at 709.247 kb on + strand, within EX31_RS20380 at 709.247 kb on + strand, within EX31_RS20380 at 709.247 kb on + strand, within EX31_RS20380 at 709.248 kb on - strand, within EX31_RS20380 at 709.248 kb on - strand, within EX31_RS20380 at 709.280 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.332 kb on + strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.333 kb on - strand, within EX31_RS20380 at 709.336 kb on + strand, within EX31_RS20380 at 709.336 kb on + strand, within EX31_RS20380 at 709.336 kb on + strand, within EX31_RS20380 at 709.337 kb on - strand, within EX31_RS20380 at 709.337 kb on - strand, within EX31_RS20380 at 709.406 kb on - strand, within EX31_RS20380 at 709.458 kb on - strand, within EX31_RS20380 at 709.458 kb on - strand, within EX31_RS20380 at 709.458 kb on - strand, within EX31_RS20380 at 709.458 kb on - strand, within EX31_RS20380 at 709.628 kb on + strand, within EX31_RS20380 at 709.666 kb on - strand, within EX31_RS20380 at 709.755 kb on - strand at 709.797 kb on + strand at 709.797 kb on + strand at 709.798 kb on - strand at 709.801 kb on + strand at 709.802 kb on - strand at 709.802 kb on - strand at 709.814 kb on + strand at 709.814 kb on + strand at 709.814 kb on + strand at 709.814 kb on + strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.815 kb on - strand at 709.817 kb on + strand at 709.818 kb on - strand at 709.818 kb on - strand at 709.886 kb on + strand at 709.952 kb on + strand at 709.953 kb on - strand at 709.955 kb on + strand at 709.955 kb on + strand at 709.955 kb on + strand at 709.955 kb on + strand at 709.955 kb on + strand at 709.955 kb on + strand at 709.955 kb on + strand at 709.956 kb on - strand at 709.956 kb on - strand at 709.956 kb on - strand at 709.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 707,296 + EX31_RS20370 0.56 +0.2 707,296 + EX31_RS20370 0.56 -0.5 707,326 - EX31_RS20370 0.58 +0.7 707,373 + EX31_RS20370 0.62 +3.8 707,374 - EX31_RS20370 0.62 -1.0 707,395 + EX31_RS20370 0.63 +0.8 707,395 + EX31_RS20370 0.63 -0.5 707,395 + EX31_RS20370 0.63 -0.5 707,396 - EX31_RS20370 0.63 -0.2 707,396 - EX31_RS20370 0.63 -0.4 707,396 - EX31_RS20370 0.63 -0.2 707,451 + EX31_RS20370 0.67 -0.6 707,452 - EX31_RS20370 0.67 +0.8 707,452 - EX31_RS20370 0.67 +0.0 707,452 - EX31_RS20370 0.67 +1.0 707,484 + EX31_RS20370 0.70 -1.0 707,486 + EX31_RS20370 0.70 -0.6 707,486 + EX31_RS20370 0.70 +0.2 707,487 - EX31_RS20370 0.70 -0.3 707,487 - EX31_RS20370 0.70 -2.9 707,487 - EX31_RS20370 0.70 +0.1 707,507 + EX31_RS20370 0.71 +2.1 707,507 + EX31_RS20370 0.71 -2.0 707,507 + EX31_RS20370 0.71 +1.5 707,508 - EX31_RS20370 0.71 +2.0 707,508 - EX31_RS20370 0.71 +0.6 707,508 - EX31_RS20370 0.71 -0.3 707,559 + EX31_RS20370 0.75 -0.9 707,603 - EX31_RS20370 0.78 -0.6 707,747 + EX31_RS20370 0.88 +0.1 707,747 + EX31_RS20370 0.88 -0.8 707,773 - -0.0 707,773 - +0.7 707,782 - -0.0 707,782 - +0.6 707,895 + -0.6 707,896 - -1.9 707,896 - -1.6 707,931 - +1.0 707,931 - -0.7 707,938 + -0.9 707,942 + -1.2 707,944 + +0.4 707,951 + -1.2 707,967 - -0.9 707,976 + -1.4 707,983 - +0.4 708,001 + -2.4 708,149 + +1.0 708,149 + -0.4 708,150 - -1.0 708,182 + +0.2 708,182 + -2.1 708,183 - +0.5 708,183 - +1.0 708,183 - -2.6 708,183 - -1.4 708,183 - -1.0 708,183 - -0.5 708,301 + EX31_RS20375 0.14 +2.1 708,306 + EX31_RS20375 0.14 +0.3 708,307 - EX31_RS20375 0.14 +0.4 708,331 + EX31_RS20375 0.17 -0.8 708,377 - EX31_RS20375 0.23 +0.7 708,401 + EX31_RS20375 0.26 -0.0 708,401 + EX31_RS20375 0.26 +0.1 708,455 + EX31_RS20375 0.32 -0.5 708,467 + EX31_RS20375 0.34 -0.3 708,469 + EX31_RS20375 0.34 +0.6 708,469 + EX31_RS20375 0.34 -1.0 708,469 + EX31_RS20375 0.34 +2.0 708,470 - EX31_RS20375 0.34 -1.4 708,470 - EX31_RS20375 0.34 -0.6 708,470 - EX31_RS20375 0.34 -0.7 708,506 - EX31_RS20375 0.38 -0.6 708,512 - EX31_RS20375 0.39 +0.3 708,512 - EX31_RS20375 0.39 +0.2 708,530 + EX31_RS20375 0.41 -0.0 708,531 - EX31_RS20375 0.41 -0.0 708,557 - EX31_RS20375 0.44 +1.4 708,577 + EX31_RS20375 0.47 +0.4 708,577 + EX31_RS20375 0.47 +0.5 708,578 - EX31_RS20375 0.47 +3.3 708,579 + EX31_RS20375 0.47 -0.0 708,580 - EX31_RS20375 0.47 -0.3 708,625 + EX31_RS20375 0.52 -0.8 708,632 - EX31_RS20375 0.53 -0.5 708,696 + EX31_RS20375 0.61 -0.3 708,697 - EX31_RS20375 0.61 -0.2 708,773 + EX31_RS20375 0.70 -0.3 708,773 + EX31_RS20375 0.70 -3.0 708,774 - EX31_RS20375 0.70 +1.0 708,783 + EX31_RS20375 0.71 +0.1 708,783 + EX31_RS20375 0.71 -1.3 708,784 - EX31_RS20375 0.71 +0.7 708,839 + EX31_RS20375 0.78 +0.5 708,840 - EX31_RS20375 0.78 -0.2 708,872 - EX31_RS20375 0.82 -0.5 708,934 - EX31_RS20375 0.89 -0.0 708,953 + -0.0 708,953 + +1.4 708,966 - +1.0 708,982 - +1.0 708,994 - -0.1 709,007 + +0.8 709,007 + -1.2 709,007 + +0.2 709,007 + +1.1 709,007 + +0.3 709,007 + -0.2 709,009 + +0.7 709,009 + -0.5 709,009 + +0.7 709,009 + +0.1 709,009 + +0.3 709,009 + +0.6 709,010 - -0.4 709,010 - +0.1 709,010 - +0.4 709,010 - +0.2 709,010 - +0.1 709,073 + +0.8 709,073 + -0.0 709,073 + +0.2 709,074 - +0.5 709,076 + +1.7 709,096 - +0.5 709,139 + +0.1 709,139 + -1.5 709,164 + +1.3 709,165 - -0.3 709,247 + EX31_RS20380 0.20 -0.2 709,247 + EX31_RS20380 0.20 -0.0 709,247 + EX31_RS20380 0.20 +0.5 709,248 - EX31_RS20380 0.20 +0.1 709,248 - EX31_RS20380 0.20 -1.0 709,280 + EX31_RS20380 0.24 +1.0 709,332 + EX31_RS20380 0.32 +1.8 709,332 + EX31_RS20380 0.32 +0.4 709,332 + EX31_RS20380 0.32 -0.9 709,332 + EX31_RS20380 0.32 -0.3 709,332 + EX31_RS20380 0.32 -0.0 709,332 + EX31_RS20380 0.32 +1.2 709,332 + EX31_RS20380 0.32 +0.3 709,332 + EX31_RS20380 0.32 -0.2 709,332 + EX31_RS20380 0.32 +0.5 709,332 + EX31_RS20380 0.32 -0.1 709,332 + EX31_RS20380 0.32 -1.1 709,332 + EX31_RS20380 0.32 +0.2 709,333 - EX31_RS20380 0.32 -0.4 709,333 - EX31_RS20380 0.32 -0.0 709,333 - EX31_RS20380 0.32 +1.2 709,333 - EX31_RS20380 0.32 -2.2 709,333 - EX31_RS20380 0.32 +0.5 709,333 - EX31_RS20380 0.32 +0.5 709,333 - EX31_RS20380 0.32 -0.9 709,333 - EX31_RS20380 0.32 -0.8 709,333 - EX31_RS20380 0.32 +2.5 709,333 - EX31_RS20380 0.32 -2.0 709,333 - EX31_RS20380 0.32 +0.1 709,333 - EX31_RS20380 0.32 -1.2 709,333 - EX31_RS20380 0.32 -1.9 709,333 - EX31_RS20380 0.32 +1.2 709,336 + EX31_RS20380 0.32 -0.9 709,336 + EX31_RS20380 0.32 +0.2 709,336 + EX31_RS20380 0.32 -0.6 709,337 - EX31_RS20380 0.33 -0.4 709,337 - EX31_RS20380 0.33 +1.0 709,406 - EX31_RS20380 0.43 -0.4 709,458 - EX31_RS20380 0.50 +0.3 709,458 - EX31_RS20380 0.50 +0.4 709,458 - EX31_RS20380 0.50 -0.0 709,458 - EX31_RS20380 0.50 +1.0 709,628 + EX31_RS20380 0.75 +1.4 709,666 - EX31_RS20380 0.80 -2.4 709,755 - +0.2 709,797 + -0.1 709,797 + -0.7 709,798 - -0.7 709,801 + +0.4 709,802 - +0.7 709,802 - -0.0 709,814 + -0.3 709,814 + +1.3 709,814 + -0.0 709,814 + -0.4 709,815 - +1.7 709,815 - +2.0 709,815 - -0.0 709,815 - +0.6 709,815 - -0.6 709,815 - -0.0 709,815 - +0.8 709,815 - +0.3 709,815 - -1.0 709,815 - +1.2 709,815 - +0.5 709,815 - +2.5 709,815 - +1.2 709,815 - +1.0 709,815 - -0.2 709,817 + -1.4 709,818 - -0.6 709,818 - -0.4 709,886 + -1.4 709,952 + -1.3 709,953 - +1.2 709,955 + -0.6 709,955 + -0.3 709,955 + -0.6 709,955 + +1.2 709,955 + +0.1 709,955 + -0.2 709,955 + -0.4 709,956 - +0.4 709,956 - +2.0 709,956 - -2.6 709,956 - +0.1
Or see this region's nucleotide sequence