Strain Fitness in Rahnella sp. WP5 around EX31_RS20185

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20175 and EX31_RS20180 are separated by 403 nucleotidesEX31_RS20180 and EX31_RS20185 are separated by 50 nucleotidesEX31_RS20185 and EX31_RS20190 are separated by 48 nucleotidesEX31_RS20190 and EX31_RS20195 are separated by 56 nucleotides EX31_RS20175: EX31_RS20175 - cysteine synthase A, at 663,437 to 664,402 _RS20175 EX31_RS20180: EX31_RS20180 - phosphocarrier protein Hpr, at 664,806 to 665,063 _RS20180 EX31_RS20185: EX31_RS20185 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 665,114 to 666,841 _RS20185 EX31_RS20190: EX31_RS20190 - PTS glucose transporter subunit IIA, at 666,890 to 667,399 _RS20190 EX31_RS20195: EX31_RS20195 - HAMP domain-containing protein, at 667,456 to 668,805 _RS20195 Position (kb) 665 666 667Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 664.132 kb on + strand, within EX31_RS20175at 664.176 kb on + strand, within EX31_RS20175at 664.374 kb on + strandat 664.375 kb on - strandat 664.400 kb on + strandat 664.400 kb on + strandat 664.400 kb on + strandat 664.414 kb on + strandat 664.415 kb on - strandat 664.471 kb on + strandat 664.471 kb on + strandat 664.471 kb on + strandat 664.472 kb on - strandat 664.472 kb on - strandat 664.472 kb on - strandat 664.472 kb on - strandat 664.506 kb on + strandat 664.507 kb on - strandat 664.507 kb on - strandat 664.510 kb on - strandat 664.510 kb on - strandat 664.513 kb on + strandat 664.514 kb on - strandat 664.612 kb on + strandat 664.612 kb on + strandat 664.613 kb on - strandat 664.623 kb on + strandat 664.624 kb on - strandat 664.624 kb on - strandat 664.734 kb on - strandat 664.740 kb on + strandat 664.741 kb on - strandat 664.754 kb on + strandat 664.755 kb on - strandat 664.759 kb on + strandat 664.766 kb on + strandat 664.766 kb on + strandat 664.766 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.780 kb on + strandat 664.781 kb on - strandat 664.781 kb on - strandat 664.781 kb on - strandat 664.781 kb on - strandat 664.785 kb on + strandat 664.785 kb on + strandat 664.785 kb on + strandat 664.785 kb on + strandat 664.786 kb on - strandat 664.788 kb on + strandat 664.788 kb on + strandat 664.788 kb on + strandat 664.789 kb on - strandat 664.789 kb on - strandat 664.789 kb on - strandat 664.823 kb on + strandat 664.823 kb on + strandat 664.823 kb on + strandat 664.823 kb on + strandat 664.826 kb on + strandat 664.826 kb on + strandat 664.826 kb on + strandat 664.826 kb on + strandat 664.829 kb on + strandat 664.838 kb on + strand, within EX31_RS20180at 664.838 kb on + strand, within EX31_RS20180at 664.937 kb on + strand, within EX31_RS20180at 664.937 kb on + strand, within EX31_RS20180at 665.038 kb on + strandat 665.061 kb on + strandat 665.061 kb on + strandat 665.065 kb on - strandat 665.065 kb on - strandat 665.078 kb on + strandat 665.078 kb on + strandat 665.078 kb on + strandat 665.081 kb on - strandat 665.107 kb on + strandat 665.107 kb on + strandat 665.107 kb on + strandat 665.113 kb on + strandat 665.382 kb on + strand, within EX31_RS20185at 665.581 kb on + strand, within EX31_RS20185at 665.650 kb on + strand, within EX31_RS20185at 665.671 kb on + strand, within EX31_RS20185at 665.672 kb on - strand, within EX31_RS20185at 665.762 kb on + strand, within EX31_RS20185at 665.762 kb on + strand, within EX31_RS20185at 665.762 kb on + strand, within EX31_RS20185at 665.763 kb on - strand, within EX31_RS20185at 665.782 kb on + strand, within EX31_RS20185at 665.795 kb on + strand, within EX31_RS20185at 665.849 kb on + strand, within EX31_RS20185at 665.849 kb on + strand, within EX31_RS20185at 666.062 kb on + strand, within EX31_RS20185at 666.062 kb on + strand, within EX31_RS20185at 666.064 kb on + strand, within EX31_RS20185at 666.105 kb on + strand, within EX31_RS20185at 666.105 kb on + strand, within EX31_RS20185at 666.143 kb on + strand, within EX31_RS20185at 666.143 kb on + strand, within EX31_RS20185at 666.144 kb on - strand, within EX31_RS20185at 666.196 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.491 kb on - strand, within EX31_RS20185at 666.533 kb on + strand, within EX31_RS20185at 666.533 kb on + strand, within EX31_RS20185at 666.555 kb on + strand, within EX31_RS20185at 666.568 kb on + strand, within EX31_RS20185at 666.568 kb on + strand, within EX31_RS20185at 666.578 kb on - strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.657 kb on + strand, within EX31_RS20185at 666.672 kb on + strandat 666.694 kb on + strandat 666.694 kb on + strandat 666.781 kb on + strandat 666.839 kb on + strandat 666.856 kb on + strandat 666.856 kb on + strandat 666.871 kb on + strandat 666.878 kb on + strandat 666.949 kb on + strand, within EX31_RS20190at 667.045 kb on + strand, within EX31_RS20190at 667.046 kb on - strand, within EX31_RS20190at 667.315 kb on + strand, within EX31_RS20190at 667.354 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.416 kb on + strandat 667.416 kb on + strandat 667.416 kb on + strandat 667.522 kb on + strandat 667.522 kb on + strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.627 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.716 kb on + strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.749 kb on + strand, within EX31_RS20195at 667.749 kb on + strand, within EX31_RS20195at 667.750 kb on - strand, within EX31_RS20195at 667.791 kb on + strand, within EX31_RS20195at 667.792 kb on - strand, within EX31_RS20195at 667.805 kb on + strand, within EX31_RS20195at 667.806 kb on - strand, within EX31_RS20195at 667.806 kb on - strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.813 kb on - strand, within EX31_RS20195at 667.813 kb on - strand, within EX31_RS20195

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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664,132 + EX31_RS20175 0.72 -3.4
664,176 + EX31_RS20175 0.77 -2.6
664,374 + +0.2
664,375 - -2.5
664,400 + -1.2
664,400 + +0.0
664,400 + -0.2
664,414 + -0.1
664,415 - +0.5
664,471 + -1.0
664,471 + +1.5
664,471 + -1.6
664,472 - -1.0
664,472 - -2.5
664,472 - -0.6
664,472 - -0.8
664,506 + -2.6
664,507 - +0.1
664,507 - +0.5
664,510 - -0.0
664,510 - +0.2
664,513 + -1.4
664,514 - -0.9
664,612 + -0.3
664,612 + -1.4
664,613 - -2.3
664,623 + -0.3
664,624 - -2.1
664,624 - -0.9
664,734 - -1.6
664,740 + +0.4
664,741 - -1.6
664,754 + -1.1
664,755 - -2.5
664,759 + -3.0
664,766 + -2.9
664,766 + -0.6
664,766 + -2.9
664,780 + -2.0
664,780 + -0.6
664,780 + -2.6
664,780 + -2.1
664,780 + -3.4
664,780 + -1.1
664,780 + -1.9
664,780 + -2.8
664,780 + -3.0
664,780 + -2.6
664,781 - +0.9
664,781 - -1.4
664,781 - -0.6
664,781 - -0.6
664,785 + -2.1
664,785 + -3.6
664,785 + -1.8
664,785 + -3.1
664,786 - -1.1
664,788 + -2.9
664,788 + -2.5
664,788 + -3.1
664,789 - -1.6
664,789 - -0.6
664,789 - -2.4
664,823 + -1.9
664,823 + -1.6
664,823 + -1.6
664,823 + -3.4
664,826 + -0.1
664,826 + -3.7
664,826 + -2.5
664,826 + -1.6
664,829 + +0.9
664,838 + EX31_RS20180 0.12 -2.2
664,838 + EX31_RS20180 0.12 -2.9
664,937 + EX31_RS20180 0.51 -3.2
664,937 + EX31_RS20180 0.51 -1.2
665,038 + -0.6
665,061 + -0.8
665,061 + +0.1
665,065 - -1.6
665,065 - -0.6
665,078 + -0.1
665,078 + +0.4
665,078 + -0.4
665,081 - -2.9
665,107 + -1.1
665,107 + -2.5
665,107 + -0.4
665,113 + -2.1
665,382 + EX31_RS20185 0.16 -3.6
665,581 + EX31_RS20185 0.27 -3.0
665,650 + EX31_RS20185 0.31 -1.1
665,671 + EX31_RS20185 0.32 -2.6
665,672 - EX31_RS20185 0.32 -1.4
665,762 + EX31_RS20185 0.38 -2.5
665,762 + EX31_RS20185 0.38 -1.1
665,762 + EX31_RS20185 0.38 +0.9
665,763 - EX31_RS20185 0.38 -0.6
665,782 + EX31_RS20185 0.39 -2.2
665,795 + EX31_RS20185 0.39 -1.4
665,849 + EX31_RS20185 0.43 -1.4
665,849 + EX31_RS20185 0.43 -2.1
666,062 + EX31_RS20185 0.55 -2.6
666,062 + EX31_RS20185 0.55 +0.9
666,064 + EX31_RS20185 0.55 -1.6
666,105 + EX31_RS20185 0.57 -2.1
666,105 + EX31_RS20185 0.57 -0.1
666,143 + EX31_RS20185 0.60 -2.5
666,143 + EX31_RS20185 0.60 -1.1
666,144 - EX31_RS20185 0.60 -1.9
666,196 + EX31_RS20185 0.63 -1.9
666,490 + EX31_RS20185 0.80 -1.1
666,490 + EX31_RS20185 0.80 -1.4
666,490 + EX31_RS20185 0.80 -2.2
666,491 - EX31_RS20185 0.80 +0.9
666,533 + EX31_RS20185 0.82 -1.9
666,533 + EX31_RS20185 0.82 -2.8
666,555 + EX31_RS20185 0.83 -2.5
666,568 + EX31_RS20185 0.84 -2.4
666,568 + EX31_RS20185 0.84 -2.1
666,578 - EX31_RS20185 0.85 +0.9
666,646 + EX31_RS20185 0.89 -2.9
666,646 + EX31_RS20185 0.89 -1.9
666,646 + EX31_RS20185 0.89 -1.4
666,657 + EX31_RS20185 0.89 -2.4
666,672 + -1.9
666,694 + -0.1
666,694 + -2.9
666,781 + -3.3
666,839 + -0.2
666,856 + -0.1
666,856 + +1.4
666,871 + +0.7
666,878 + -1.3
666,949 + EX31_RS20190 0.12 -1.4
667,045 + EX31_RS20190 0.30 +0.5
667,046 - EX31_RS20190 0.31 +0.9
667,315 + EX31_RS20190 0.83 +0.3
667,354 + +0.7
667,397 + +0.1
667,397 + -1.2
667,397 + -0.6
667,397 + +0.9
667,416 + -0.6
667,416 + -0.5
667,416 + +1.4
667,522 + -1.1
667,522 + +0.9
667,523 - -0.8
667,523 - -1.1
667,523 - +0.4
667,523 - +0.5
667,523 - -0.2
667,523 - -1.2
667,627 - EX31_RS20195 0.13 +1.4
667,639 - EX31_RS20195 0.14 -0.8
667,639 - EX31_RS20195 0.14 +0.9
667,639 - EX31_RS20195 0.14 -0.1
667,639 - EX31_RS20195 0.14 +0.9
667,639 - EX31_RS20195 0.14 -0.3
667,686 - EX31_RS20195 0.17 +0.5
667,686 - EX31_RS20195 0.17 +1.8
667,686 - EX31_RS20195 0.17 -0.1
667,686 - EX31_RS20195 0.17 +1.3
667,686 - EX31_RS20195 0.17 -0.1
667,716 + EX31_RS20195 0.19 +0.9
667,717 - EX31_RS20195 0.19 -0.1
667,717 - EX31_RS20195 0.19 -0.5
667,717 - EX31_RS20195 0.19 +1.1
667,717 - EX31_RS20195 0.19 +0.5
667,717 - EX31_RS20195 0.19 +0.8
667,717 - EX31_RS20195 0.19 +0.4
667,749 + EX31_RS20195 0.22 +0.9
667,749 + EX31_RS20195 0.22 -0.8
667,750 - EX31_RS20195 0.22 +0.8
667,791 + EX31_RS20195 0.25 -1.6
667,792 - EX31_RS20195 0.25 +0.8
667,805 + EX31_RS20195 0.26 +2.5
667,806 - EX31_RS20195 0.26 +1.1
667,806 - EX31_RS20195 0.26 -1.1
667,812 + EX31_RS20195 0.26 +1.3
667,812 + EX31_RS20195 0.26 +1.3
667,812 + EX31_RS20195 0.26 -1.2
667,813 - EX31_RS20195 0.26 -2.1
667,813 - EX31_RS20195 0.26 -0.4

Or see this region's nucleotide sequence