Strain Fitness in Rahnella sp. WP5 around EX31_RS19975

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19960 and EX31_RS19965 are separated by 11 nucleotidesEX31_RS19965 and EX31_RS19970 are separated by 90 nucleotidesEX31_RS19970 and EX31_RS19975 are separated by 39 nucleotidesEX31_RS19975 and EX31_RS19980 are separated by 871 nucleotides EX31_RS19960: EX31_RS19960 - HoxN/HupN/NixA family nickel/cobalt transporter, at 623,203 to 624,228 _RS19960 EX31_RS19965: EX31_RS19965 - hypothetical protein, at 624,240 to 624,569 _RS19965 EX31_RS19970: EX31_RS19970 - curlin, at 624,660 to 625,136 _RS19970 EX31_RS19975: EX31_RS19975 - curlin, at 625,176 to 625,664 _RS19975 EX31_RS19980: EX31_RS19980 - transcriptional regulator CsgD, at 626,536 to 627,186 _RS19980 Position (kb) 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 624.190 kb on - strandat 624.208 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.261 kb on - strandat 624.297 kb on - strand, within EX31_RS19965at 624.297 kb on - strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.519 kb on - strand, within EX31_RS19965at 624.561 kb on + strandat 624.562 kb on - strandat 624.562 kb on - strandat 624.577 kb on - strandat 624.609 kb on + strandat 624.627 kb on + strandat 624.627 kb on + strandat 624.627 kb on + strandat 624.657 kb on + strandat 624.658 kb on - strandat 624.658 kb on - strandat 624.676 kb on + strandat 624.705 kb on - strandat 624.705 kb on - strandat 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.753 kb on - strand, within EX31_RS19970at 624.753 kb on - strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.834 kb on + strand, within EX31_RS19970at 624.834 kb on + strand, within EX31_RS19970at 624.881 kb on + strand, within EX31_RS19970at 624.889 kb on + strand, within EX31_RS19970at 624.971 kb on - strand, within EX31_RS19970at 624.971 kb on - strand, within EX31_RS19970at 625.037 kb on + strand, within EX31_RS19970at 625.101 kb on + strandat 625.101 kb on + strandat 625.102 kb on - strandat 625.102 kb on - strandat 625.155 kb on + strandat 625.155 kb on + strandat 625.156 kb on - strandat 625.156 kb on - strandat 625.156 kb on - strandat 625.288 kb on + strand, within EX31_RS19975at 625.288 kb on + strand, within EX31_RS19975at 625.288 kb on + strand, within EX31_RS19975at 625.288 kb on + strand, within EX31_RS19975at 625.288 kb on + strand, within EX31_RS19975at 625.289 kb on - strand, within EX31_RS19975at 625.348 kb on - strand, within EX31_RS19975at 625.362 kb on - strand, within EX31_RS19975at 625.362 kb on - strand, within EX31_RS19975at 625.362 kb on - strand, within EX31_RS19975at 625.380 kb on + strand, within EX31_RS19975at 625.382 kb on + strand, within EX31_RS19975at 625.424 kb on + strand, within EX31_RS19975at 625.425 kb on - strand, within EX31_RS19975at 625.497 kb on - strand, within EX31_RS19975at 625.677 kb on + strandat 625.679 kb on + strandat 625.680 kb on - strandat 625.960 kb on - strandat 626.046 kb on - strandat 626.046 kb on - strandat 626.046 kb on - strandat 626.046 kb on - strandat 626.109 kb on + strandat 626.109 kb on + strandat 626.110 kb on - strandat 626.123 kb on + strandat 626.123 kb on + strandat 626.123 kb on + strandat 626.124 kb on - strandat 626.165 kb on + strandat 626.177 kb on - strandat 626.177 kb on - strandat 626.177 kb on - strandat 626.177 kb on - strandat 626.186 kb on + strandat 626.225 kb on + strandat 626.226 kb on - strandat 626.236 kb on + strandat 626.236 kb on + strandat 626.268 kb on + strandat 626.268 kb on + strandat 626.323 kb on + strandat 626.432 kb on + strandat 626.441 kb on - strandat 626.467 kb on + strandat 626.486 kb on - strandat 626.595 kb on - strandat 626.664 kb on + strand, within EX31_RS19980

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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624,190 - -0.2
624,208 + -0.8
624,260 + -2.5
624,260 + +2.5
624,260 + +0.9
624,260 + +1.7
624,260 + +0.6
624,260 + -0.3
624,261 - -0.6
624,297 - EX31_RS19965 0.17 -0.4
624,297 - EX31_RS19965 0.17 +0.4
624,308 + EX31_RS19965 0.21 +1.5
624,308 + EX31_RS19965 0.21 -1.6
624,308 + EX31_RS19965 0.21 -1.6
624,308 + EX31_RS19965 0.21 -0.4
624,309 - EX31_RS19965 0.21 +0.2
624,309 - EX31_RS19965 0.21 +0.1
624,309 - EX31_RS19965 0.21 -0.2
624,491 + EX31_RS19965 0.76 +1.7
624,491 + EX31_RS19965 0.76 +0.1
624,491 + EX31_RS19965 0.76 +0.8
624,491 + EX31_RS19965 0.76 -1.1
624,496 + EX31_RS19965 0.78 -1.6
624,496 + EX31_RS19965 0.78 -0.2
624,496 + EX31_RS19965 0.78 +0.0
624,496 + EX31_RS19965 0.78 +0.4
624,496 + EX31_RS19965 0.78 -0.6
624,496 + EX31_RS19965 0.78 -0.4
624,497 - EX31_RS19965 0.78 +1.2
624,497 - EX31_RS19965 0.78 -1.1
624,497 - EX31_RS19965 0.78 +0.8
624,519 - EX31_RS19965 0.85 +1.5
624,561 + -1.9
624,562 - +1.2
624,562 - +0.2
624,577 - +1.7
624,609 + +0.7
624,627 + +0.4
624,627 + -1.3
624,627 + +2.5
624,657 + +0.7
624,658 - +0.8
624,658 - +1.9
624,676 + -0.5
624,705 - +0.2
624,705 - +0.5
624,748 + EX31_RS19970 0.18 +2.5
624,748 + EX31_RS19970 0.18 -0.3
624,748 + EX31_RS19970 0.18 -0.5
624,748 + EX31_RS19970 0.18 -1.3
624,748 + EX31_RS19970 0.18 +1.5
624,748 + EX31_RS19970 0.18 -0.3
624,748 + EX31_RS19970 0.18 +3.3
624,748 + EX31_RS19970 0.18 -0.6
624,748 + EX31_RS19970 0.18 -0.8
624,748 + EX31_RS19970 0.18 -1.5
624,749 - EX31_RS19970 0.19 -0.3
624,749 - EX31_RS19970 0.19 +0.6
624,749 - EX31_RS19970 0.19 -0.3
624,749 - EX31_RS19970 0.19 +0.7
624,749 - EX31_RS19970 0.19 +0.2
624,749 - EX31_RS19970 0.19 -0.5
624,749 - EX31_RS19970 0.19 +0.4
624,749 - EX31_RS19970 0.19 +0.0
624,749 - EX31_RS19970 0.19 -0.0
624,749 - EX31_RS19970 0.19 +0.6
624,749 - EX31_RS19970 0.19 -1.1
624,749 - EX31_RS19970 0.19 +0.8
624,749 - EX31_RS19970 0.19 -1.9
624,749 - EX31_RS19970 0.19 +2.9
624,749 - EX31_RS19970 0.19 -0.5
624,749 - EX31_RS19970 0.19 -2.5
624,749 - EX31_RS19970 0.19 -2.8
624,753 - EX31_RS19970 0.19 +0.2
624,753 - EX31_RS19970 0.19 -1.8
624,820 + EX31_RS19970 0.34 -2.1
624,820 + EX31_RS19970 0.34 -1.4
624,820 + EX31_RS19970 0.34 -1.9
624,820 + EX31_RS19970 0.34 +0.2
624,820 + EX31_RS19970 0.34 -0.2
624,820 + EX31_RS19970 0.34 +1.3
624,820 + EX31_RS19970 0.34 -0.4
624,821 - EX31_RS19970 0.34 -1.8
624,821 - EX31_RS19970 0.34 -0.4
624,821 - EX31_RS19970 0.34 -0.2
624,834 + EX31_RS19970 0.36 +1.9
624,834 + EX31_RS19970 0.36 -0.9
624,881 + EX31_RS19970 0.46 +0.4
624,889 + EX31_RS19970 0.48 +0.2
624,971 - EX31_RS19970 0.65 +0.9
624,971 - EX31_RS19970 0.65 +0.5
625,037 + EX31_RS19970 0.79 +0.5
625,101 + +0.4
625,101 + -1.9
625,102 - -0.7
625,102 - +0.7
625,155 + -2.1
625,155 + +1.7
625,156 - +0.0
625,156 - +0.9
625,156 - -0.5
625,288 + EX31_RS19975 0.23 -0.8
625,288 + EX31_RS19975 0.23 +0.4
625,288 + EX31_RS19975 0.23 -2.5
625,288 + EX31_RS19975 0.23 -2.5
625,288 + EX31_RS19975 0.23 +0.9
625,289 - EX31_RS19975 0.23 +1.2
625,348 - EX31_RS19975 0.35 -0.7
625,362 - EX31_RS19975 0.38 -0.4
625,362 - EX31_RS19975 0.38 -1.1
625,362 - EX31_RS19975 0.38 +1.7
625,380 + EX31_RS19975 0.42 -0.6
625,382 + EX31_RS19975 0.42 +1.9
625,424 + EX31_RS19975 0.51 +0.9
625,425 - EX31_RS19975 0.51 -0.5
625,497 - EX31_RS19975 0.66 -0.1
625,677 + -1.2
625,679 + -0.6
625,680 - +1.2
625,960 - -0.1
626,046 - -0.3
626,046 - -0.4
626,046 - +0.5
626,046 - -0.9
626,109 + -0.3
626,109 + -0.6
626,110 - +0.5
626,123 + +1.2
626,123 + +1.3
626,123 + +0.4
626,124 - +0.4
626,165 + -0.3
626,177 - -0.3
626,177 - -1.5
626,177 - -1.1
626,177 - +1.9
626,186 + -0.1
626,225 + +0.9
626,226 - +2.5
626,236 + +0.9
626,236 + -2.9
626,268 + +1.5
626,268 + -0.1
626,323 + +0.9
626,432 + -0.7
626,441 - +0.1
626,467 + +0.4
626,486 - -0.4
626,595 - +0.9
626,664 + EX31_RS19980 0.20 +0.8

Or see this region's nucleotide sequence