Strain Fitness in Rahnella sp. WP5 around EX31_RS19825

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19820 and EX31_RS19825 are separated by 284 nucleotidesEX31_RS19825 and EX31_RS19830 are separated by 92 nucleotidesEX31_RS19830 and EX31_RS19835 are separated by 54 nucleotides EX31_RS19820: EX31_RS19820 - Gfo/Idh/MocA family oxidoreductase, at 595,243 to 596,418 _RS19820 EX31_RS19825: EX31_RS19825 - LacI family transcriptional regulator, at 596,703 to 597,764 _RS19825 EX31_RS19830: EX31_RS19830 - glutathione-dependent disulfide-bond oxidoreductase, at 597,857 to 598,702 _RS19830 EX31_RS19835: EX31_RS19835 - dienelactone hydrolase family protein, at 598,757 to 599,662 _RS19835 Position (kb) 596 597 598Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 595.748 kb on + strand, within EX31_RS19820at 595.749 kb on - strand, within EX31_RS19820at 595.806 kb on + strand, within EX31_RS19820at 595.931 kb on + strand, within EX31_RS19820at 595.932 kb on - strand, within EX31_RS19820at 595.934 kb on + strand, within EX31_RS19820at 595.935 kb on - strand, within EX31_RS19820at 596.035 kb on - strand, within EX31_RS19820at 596.110 kb on + strand, within EX31_RS19820at 596.110 kb on + strand, within EX31_RS19820at 596.111 kb on - strand, within EX31_RS19820at 596.189 kb on + strand, within EX31_RS19820at 596.189 kb on + strand, within EX31_RS19820at 596.189 kb on + strand, within EX31_RS19820at 596.190 kb on - strand, within EX31_RS19820at 596.256 kb on - strand, within EX31_RS19820at 596.316 kb on + strandat 596.317 kb on - strandat 596.321 kb on - strandat 596.357 kb on - strandat 596.361 kb on - strandat 596.371 kb on - strandat 596.376 kb on + strandat 596.376 kb on + strandat 596.432 kb on - strandat 596.432 kb on - strandat 596.433 kb on + strandat 596.434 kb on - strandat 596.511 kb on + strandat 596.516 kb on - strandat 596.557 kb on + strandat 596.584 kb on - strandat 596.937 kb on + strand, within EX31_RS19825at 596.938 kb on - strand, within EX31_RS19825at 596.940 kb on + strand, within EX31_RS19825at 596.941 kb on - strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.993 kb on - strand, within EX31_RS19825at 596.993 kb on - strand, within EX31_RS19825at 596.993 kb on - strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 597.086 kb on + strand, within EX31_RS19825at 597.125 kb on + strand, within EX31_RS19825at 597.125 kb on + strand, within EX31_RS19825at 597.125 kb on + strand, within EX31_RS19825at 597.125 kb on + strand, within EX31_RS19825at 597.139 kb on + strand, within EX31_RS19825at 597.139 kb on + strand, within EX31_RS19825at 597.195 kb on + strand, within EX31_RS19825at 597.195 kb on + strand, within EX31_RS19825at 597.222 kb on + strand, within EX31_RS19825at 597.222 kb on + strand, within EX31_RS19825at 597.222 kb on + strand, within EX31_RS19825at 597.223 kb on - strand, within EX31_RS19825at 597.253 kb on + strand, within EX31_RS19825at 597.253 kb on + strand, within EX31_RS19825at 597.399 kb on - strand, within EX31_RS19825at 597.399 kb on - strand, within EX31_RS19825at 597.408 kb on + strand, within EX31_RS19825at 597.408 kb on + strand, within EX31_RS19825at 597.408 kb on + strand, within EX31_RS19825at 597.408 kb on + strand, within EX31_RS19825at 597.409 kb on - strand, within EX31_RS19825at 597.423 kb on - strand, within EX31_RS19825at 597.451 kb on + strand, within EX31_RS19825at 597.451 kb on + strand, within EX31_RS19825at 597.451 kb on + strand, within EX31_RS19825at 597.451 kb on + strand, within EX31_RS19825at 597.451 kb on + strand, within EX31_RS19825at 597.452 kb on - strand, within EX31_RS19825at 597.452 kb on - strand, within EX31_RS19825at 597.510 kb on - strand, within EX31_RS19825at 597.524 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.630 kb on + strand, within EX31_RS19825at 597.631 kb on - strand, within EX31_RS19825at 597.631 kb on - strand, within EX31_RS19825at 597.631 kb on - strand, within EX31_RS19825at 597.632 kb on + strand, within EX31_RS19825at 597.632 kb on + strand, within EX31_RS19825at 597.632 kb on + strand, within EX31_RS19825at 597.632 kb on + strand, within EX31_RS19825at 597.633 kb on - strand, within EX31_RS19825at 597.685 kb on + strandat 597.686 kb on - strandat 597.686 kb on - strandat 597.686 kb on - strandat 597.747 kb on + strandat 597.747 kb on + strandat 597.747 kb on + strandat 597.748 kb on - strandat 597.803 kb on + strandat 597.803 kb on + strandat 597.804 kb on - strandat 597.804 kb on - strandat 597.828 kb on + strandat 597.828 kb on + strandat 597.829 kb on - strandat 597.829 kb on - strandat 597.869 kb on + strandat 597.870 kb on - strandat 597.870 kb on - strandat 597.995 kb on + strand, within EX31_RS19830at 597.996 kb on - strand, within EX31_RS19830at 597.996 kb on - strand, within EX31_RS19830at 598.047 kb on + strand, within EX31_RS19830at 598.047 kb on + strand, within EX31_RS19830at 598.076 kb on + strand, within EX31_RS19830at 598.076 kb on + strand, within EX31_RS19830at 598.077 kb on - strand, within EX31_RS19830at 598.077 kb on - strand, within EX31_RS19830at 598.087 kb on + strand, within EX31_RS19830at 598.087 kb on + strand, within EX31_RS19830at 598.088 kb on - strand, within EX31_RS19830at 598.088 kb on - strand, within EX31_RS19830at 598.088 kb on - strand, within EX31_RS19830at 598.088 kb on - strand, within EX31_RS19830at 598.171 kb on + strand, within EX31_RS19830at 598.320 kb on - strand, within EX31_RS19830at 598.346 kb on + strand, within EX31_RS19830at 598.347 kb on - strand, within EX31_RS19830at 598.347 kb on - strand, within EX31_RS19830at 598.391 kb on - strand, within EX31_RS19830at 598.419 kb on + strand, within EX31_RS19830at 598.419 kb on + strand, within EX31_RS19830at 598.419 kb on + strand, within EX31_RS19830at 598.420 kb on - strand, within EX31_RS19830at 598.420 kb on - strand, within EX31_RS19830at 598.420 kb on - strand, within EX31_RS19830at 598.420 kb on - strand, within EX31_RS19830at 598.420 kb on - strand, within EX31_RS19830at 598.420 kb on - strand, within EX31_RS19830at 598.422 kb on + strand, within EX31_RS19830at 598.423 kb on - strand, within EX31_RS19830at 598.423 kb on - strand, within EX31_RS19830at 598.466 kb on + strand, within EX31_RS19830at 598.466 kb on + strand, within EX31_RS19830at 598.467 kb on - strand, within EX31_RS19830at 598.526 kb on + strand, within EX31_RS19830at 598.526 kb on + strand, within EX31_RS19830at 598.527 kb on - strand, within EX31_RS19830at 598.537 kb on + strand, within EX31_RS19830at 598.538 kb on - strand, within EX31_RS19830at 598.538 kb on - strand, within EX31_RS19830at 598.559 kb on + strand, within EX31_RS19830at 598.559 kb on + strand, within EX31_RS19830at 598.559 kb on + strand, within EX31_RS19830at 598.560 kb on - strand, within EX31_RS19830at 598.560 kb on - strand, within EX31_RS19830at 598.560 kb on - strand, within EX31_RS19830at 598.561 kb on + strand, within EX31_RS19830at 598.561 kb on + strand, within EX31_RS19830at 598.562 kb on - strand, within EX31_RS19830at 598.562 kb on - strand, within EX31_RS19830at 598.758 kb on + strandat 598.758 kb on + strandat 598.758 kb on + strandat 598.759 kb on - strandat 598.759 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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595,748 + EX31_RS19820 0.43 -0.5
595,749 - EX31_RS19820 0.43 +0.9
595,806 + EX31_RS19820 0.48 +0.9
595,931 + EX31_RS19820 0.59 +0.9
595,932 - EX31_RS19820 0.59 -0.2
595,934 + EX31_RS19820 0.59 +0.4
595,935 - EX31_RS19820 0.59 -0.2
596,035 - EX31_RS19820 0.67 +0.9
596,110 + EX31_RS19820 0.74 -2.1
596,110 + EX31_RS19820 0.74 +0.6
596,111 - EX31_RS19820 0.74 +1.1
596,189 + EX31_RS19820 0.80 +0.5
596,189 + EX31_RS19820 0.80 +0.7
596,189 + EX31_RS19820 0.80 +0.5
596,190 - EX31_RS19820 0.81 +0.3
596,256 - EX31_RS19820 0.86 +1.0
596,316 + +0.2
596,317 - +0.7
596,321 - +0.4
596,357 - +1.5
596,361 - -0.1
596,371 - +0.4
596,376 + +0.9
596,376 + -0.2
596,432 - -0.5
596,432 - +0.4
596,433 + +0.2
596,434 - -0.1
596,511 + +0.4
596,516 - +0.5
596,557 + -0.1
596,584 - -0.5
596,937 + EX31_RS19825 0.22 -1.5
596,938 - EX31_RS19825 0.22 -1.1
596,940 + EX31_RS19825 0.22 +0.3
596,941 - EX31_RS19825 0.22 -0.7
596,992 + EX31_RS19825 0.27 -1.0
596,992 + EX31_RS19825 0.27 -0.7
596,992 + EX31_RS19825 0.27 +1.0
596,992 + EX31_RS19825 0.27 +0.6
596,992 + EX31_RS19825 0.27 -1.1
596,992 + EX31_RS19825 0.27 +0.3
596,993 - EX31_RS19825 0.27 +1.9
596,993 - EX31_RS19825 0.27 -1.1
596,993 - EX31_RS19825 0.27 -1.9
596,996 + EX31_RS19825 0.28 -1.0
596,996 + EX31_RS19825 0.28 -0.1
596,996 + EX31_RS19825 0.28 -0.7
596,996 + EX31_RS19825 0.28 -1.4
596,996 + EX31_RS19825 0.28 -0.3
596,996 + EX31_RS19825 0.28 +0.4
596,997 - EX31_RS19825 0.28 +0.9
596,997 - EX31_RS19825 0.28 -0.1
596,997 - EX31_RS19825 0.28 -1.1
596,997 - EX31_RS19825 0.28 +0.4
596,997 - EX31_RS19825 0.28 -1.9
597,086 + EX31_RS19825 0.36 +1.8
597,125 + EX31_RS19825 0.40 -1.4
597,125 + EX31_RS19825 0.40 +1.1
597,125 + EX31_RS19825 0.40 +1.8
597,125 + EX31_RS19825 0.40 +0.2
597,139 + EX31_RS19825 0.41 +0.5
597,139 + EX31_RS19825 0.41 -0.8
597,195 + EX31_RS19825 0.46 -0.7
597,195 + EX31_RS19825 0.46 -2.0
597,222 + EX31_RS19825 0.49 -1.2
597,222 + EX31_RS19825 0.49 +0.1
597,222 + EX31_RS19825 0.49 +0.1
597,223 - EX31_RS19825 0.49 -1.1
597,253 + EX31_RS19825 0.52 -1.9
597,253 + EX31_RS19825 0.52 -0.9
597,399 - EX31_RS19825 0.66 +0.3
597,399 - EX31_RS19825 0.66 -0.9
597,408 + EX31_RS19825 0.66 +0.3
597,408 + EX31_RS19825 0.66 -0.3
597,408 + EX31_RS19825 0.66 +0.9
597,408 + EX31_RS19825 0.66 -1.2
597,409 - EX31_RS19825 0.66 -1.3
597,423 - EX31_RS19825 0.68 +1.3
597,451 + EX31_RS19825 0.70 -0.1
597,451 + EX31_RS19825 0.70 +0.7
597,451 + EX31_RS19825 0.70 -1.9
597,451 + EX31_RS19825 0.70 -0.3
597,451 + EX31_RS19825 0.70 +0.5
597,452 - EX31_RS19825 0.71 -0.1
597,452 - EX31_RS19825 0.71 -0.1
597,510 - EX31_RS19825 0.76 +0.7
597,524 + EX31_RS19825 0.77 -0.8
597,630 + EX31_RS19825 0.87 -1.8
597,630 + EX31_RS19825 0.87 -1.4
597,630 + EX31_RS19825 0.87 -0.5
597,630 + EX31_RS19825 0.87 -1.2
597,630 + EX31_RS19825 0.87 -1.7
597,630 + EX31_RS19825 0.87 +0.9
597,630 + EX31_RS19825 0.87 +2.2
597,630 + EX31_RS19825 0.87 -2.2
597,630 + EX31_RS19825 0.87 +0.6
597,630 + EX31_RS19825 0.87 +0.4
597,630 + EX31_RS19825 0.87 +0.7
597,630 + EX31_RS19825 0.87 +0.5
597,630 + EX31_RS19825 0.87 +2.1
597,631 - EX31_RS19825 0.87 -0.3
597,631 - EX31_RS19825 0.87 +0.9
597,631 - EX31_RS19825 0.87 -2.1
597,632 + EX31_RS19825 0.87 -1.7
597,632 + EX31_RS19825 0.87 +1.5
597,632 + EX31_RS19825 0.87 +0.1
597,632 + EX31_RS19825 0.87 -2.5
597,633 - EX31_RS19825 0.88 +0.1
597,685 + -0.5
597,686 - -0.5
597,686 - -1.7
597,686 - +0.3
597,747 + -0.1
597,747 + +0.9
597,747 + -0.5
597,748 - +0.1
597,803 + -0.1
597,803 + -0.3
597,804 - +0.6
597,804 - +1.1
597,828 + +0.1
597,828 + +0.5
597,829 - +0.9
597,829 - +3.1
597,869 + +0.9
597,870 - +0.2
597,870 - -1.5
597,995 + EX31_RS19830 0.16 -0.8
597,996 - EX31_RS19830 0.16 -1.9
597,996 - EX31_RS19830 0.16 -0.2
598,047 + EX31_RS19830 0.22 +0.6
598,047 + EX31_RS19830 0.22 -2.5
598,076 + EX31_RS19830 0.26 -0.1
598,076 + EX31_RS19830 0.26 -0.7
598,077 - EX31_RS19830 0.26 +1.4
598,077 - EX31_RS19830 0.26 +0.2
598,087 + EX31_RS19830 0.27 +0.2
598,087 + EX31_RS19830 0.27 -0.7
598,088 - EX31_RS19830 0.27 -2.9
598,088 - EX31_RS19830 0.27 -2.2
598,088 - EX31_RS19830 0.27 +0.9
598,088 - EX31_RS19830 0.27 -2.2
598,171 + EX31_RS19830 0.37 +1.9
598,320 - EX31_RS19830 0.55 +0.7
598,346 + EX31_RS19830 0.58 -0.3
598,347 - EX31_RS19830 0.58 +0.6
598,347 - EX31_RS19830 0.58 -3.2
598,391 - EX31_RS19830 0.63 +0.3
598,419 + EX31_RS19830 0.66 +2.2
598,419 + EX31_RS19830 0.66 +0.8
598,419 + EX31_RS19830 0.66 +0.2
598,420 - EX31_RS19830 0.67 -0.2
598,420 - EX31_RS19830 0.67 -0.0
598,420 - EX31_RS19830 0.67 -1.3
598,420 - EX31_RS19830 0.67 -0.8
598,420 - EX31_RS19830 0.67 +0.7
598,420 - EX31_RS19830 0.67 +0.1
598,422 + EX31_RS19830 0.67 +0.7
598,423 - EX31_RS19830 0.67 +0.3
598,423 - EX31_RS19830 0.67 +0.5
598,466 + EX31_RS19830 0.72 +0.8
598,466 + EX31_RS19830 0.72 +0.5
598,467 - EX31_RS19830 0.72 +1.5
598,526 + EX31_RS19830 0.79 +0.1
598,526 + EX31_RS19830 0.79 -0.1
598,527 - EX31_RS19830 0.79 -0.3
598,537 + EX31_RS19830 0.80 +1.1
598,538 - EX31_RS19830 0.80 -0.1
598,538 - EX31_RS19830 0.80 -1.4
598,559 + EX31_RS19830 0.83 +0.7
598,559 + EX31_RS19830 0.83 +0.0
598,559 + EX31_RS19830 0.83 +0.6
598,560 - EX31_RS19830 0.83 +0.0
598,560 - EX31_RS19830 0.83 +0.6
598,560 - EX31_RS19830 0.83 +2.1
598,561 + EX31_RS19830 0.83 +0.6
598,561 + EX31_RS19830 0.83 +0.2
598,562 - EX31_RS19830 0.83 -0.0
598,562 - EX31_RS19830 0.83 -0.5
598,758 + -0.3
598,758 + -0.5
598,758 + +0.5
598,759 - -0.4
598,759 - +0.5

Or see this region's nucleotide sequence