Strain Fitness in Rahnella sp. WP5 around EX31_RS19600

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19590 and EX31_RS19595 are separated by 262 nucleotidesEX31_RS19595 and EX31_RS19600 are separated by 59 nucleotidesEX31_RS19600 and EX31_RS19605 are separated by 2 nucleotides EX31_RS19590: EX31_RS19590 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 549,499 to 550,413 _RS19590 EX31_RS19595: EX31_RS19595 - DedA family protein, at 550,676 to 551,344 _RS19595 EX31_RS19600: EX31_RS19600 - tRNA pseudouridine(38-40) synthase TruA, at 551,404 to 552,234 _RS19600 EX31_RS19605: EX31_RS19605 - aspartate-semialdehyde dehydrogenase, at 552,237 to 553,247 _RS19605 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1 2 3at 550.621 kb on - strandat 550.632 kb on + strandat 550.633 kb on - strandat 550.633 kb on - strandat 550.633 kb on - strandat 550.633 kb on - strandat 550.677 kb on + strandat 550.678 kb on - strandat 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.831 kb on + strand, within EX31_RS19595at 550.831 kb on + strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.835 kb on + strand, within EX31_RS19595at 550.835 kb on + strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.867 kb on + strand, within EX31_RS19595at 550.867 kb on + strand, within EX31_RS19595at 550.867 kb on + strand, within EX31_RS19595at 550.868 kb on - strand, within EX31_RS19595at 550.868 kb on - strand, within EX31_RS19595at 550.868 kb on - strand, within EX31_RS19595at 550.869 kb on + strand, within EX31_RS19595at 550.869 kb on + strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.888 kb on - strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.984 kb on - strand, within EX31_RS19595at 550.990 kb on + strand, within EX31_RS19595at 550.990 kb on + strand, within EX31_RS19595at 550.990 kb on + strand, within EX31_RS19595at 550.990 kb on + strand, within EX31_RS19595at 550.991 kb on - strand, within EX31_RS19595at 550.991 kb on - strand, within EX31_RS19595at 550.991 kb on - strand, within EX31_RS19595at 551.038 kb on + strand, within EX31_RS19595at 551.061 kb on - strand, within EX31_RS19595at 551.071 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.175 kb on - strand, within EX31_RS19595at 551.175 kb on - strand, within EX31_RS19595at 551.183 kb on + strand, within EX31_RS19595at 551.183 kb on + strand, within EX31_RS19595at 551.183 kb on + strand, within EX31_RS19595at 551.184 kb on - strand, within EX31_RS19595at 551.272 kb on - strand, within EX31_RS19595at 551.306 kb on - strandat 551.369 kb on + strandat 551.369 kb on + strandat 551.382 kb on - strandat 551.382 kb on - strandat 551.406 kb on - strandat 551.480 kb on + strandat 551.480 kb on + strandat 551.481 kb on - strandat 551.481 kb on - strandat 551.483 kb on - strandat 551.483 kb on - strandat 551.483 kb on - strandat 551.483 kb on - strandat 551.537 kb on - strand, within EX31_RS19600at 551.628 kb on + strand, within EX31_RS19600at 551.629 kb on - strand, within EX31_RS19600at 551.651 kb on + strand, within EX31_RS19600at 551.651 kb on + strand, within EX31_RS19600at 551.651 kb on + strand, within EX31_RS19600at 551.651 kb on + strand, within EX31_RS19600at 551.651 kb on + strand, within EX31_RS19600at 551.651 kb on + strand, within EX31_RS19600at 551.651 kb on + strand, within EX31_RS19600at 551.651 kb on + strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.652 kb on - strand, within EX31_RS19600at 551.687 kb on + strand, within EX31_RS19600at 551.688 kb on - strand, within EX31_RS19600at 551.847 kb on + strand, within EX31_RS19600at 551.849 kb on + strand, within EX31_RS19600at 551.850 kb on - strand, within EX31_RS19600at 551.850 kb on - strand, within EX31_RS19600at 551.853 kb on + strand, within EX31_RS19600at 551.854 kb on - strand, within EX31_RS19600at 551.854 kb on - strand, within EX31_RS19600at 551.859 kb on - strand, within EX31_RS19600at 551.935 kb on - strand, within EX31_RS19600at 551.935 kb on - strand, within EX31_RS19600at 552.010 kb on + strand, within EX31_RS19600at 552.011 kb on - strand, within EX31_RS19600at 552.011 kb on - strand, within EX31_RS19600at 552.011 kb on - strand, within EX31_RS19600at 552.043 kb on - strand, within EX31_RS19600at 552.150 kb on - strand, within EX31_RS19600at 552.150 kb on - strand, within EX31_RS19600at 552.164 kb on + strandat 552.165 kb on - strandat 552.165 kb on - strandat 552.165 kb on - strandat 552.234 kb on + strandat 552.234 kb on + strandat 552.235 kb on - strandat 552.235 kb on - strandat 552.235 kb on - strandat 552.235 kb on - strandat 552.235 kb on - strandat 552.334 kb on - strandat 552.334 kb on - strandat 552.356 kb on + strand, within EX31_RS19605at 552.363 kb on - strand, within EX31_RS19605at 552.437 kb on + strand, within EX31_RS19605at 552.438 kb on - strand, within EX31_RS19605at 552.438 kb on - strand, within EX31_RS19605at 552.438 kb on - strand, within EX31_RS19605at 552.441 kb on - strand, within EX31_RS19605at 552.441 kb on - strand, within EX31_RS19605at 552.441 kb on - strand, within EX31_RS19605at 552.503 kb on + strand, within EX31_RS19605at 552.504 kb on - strand, within EX31_RS19605at 552.504 kb on - strand, within EX31_RS19605at 552.527 kb on - strand, within EX31_RS19605at 552.527 kb on - strand, within EX31_RS19605at 553.003 kb on + strand, within EX31_RS19605at 553.003 kb on + strand, within EX31_RS19605at 553.003 kb on + strand, within EX31_RS19605at 553.004 kb on - strand, within EX31_RS19605at 553.004 kb on - strand, within EX31_RS19605at 553.004 kb on - strand, within EX31_RS19605at 553.004 kb on - strand, within EX31_RS19605at 553.004 kb on - strand, within EX31_RS19605at 553.004 kb on - strand, within EX31_RS19605at 553.101 kb on - strand, within EX31_RS19605at 553.179 kb on + strandat 553.180 kb on - strandat 553.180 kb on - strandat 553.229 kb on + strandat 553.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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550,621 - +0.6
550,632 + -0.7
550,633 - +0.1
550,633 - +1.0
550,633 - +0.4
550,633 - +1.1
550,677 + +0.5
550,678 - -0.3
550,827 + EX31_RS19595 0.23 -0.7
550,827 + EX31_RS19595 0.23 +1.2
550,827 + EX31_RS19595 0.23 +1.5
550,827 + EX31_RS19595 0.23 +0.1
550,827 + EX31_RS19595 0.23 -0.7
550,827 + EX31_RS19595 0.23 -0.1
550,827 + EX31_RS19595 0.23 +2.9
550,828 - EX31_RS19595 0.23 +0.6
550,828 - EX31_RS19595 0.23 -1.2
550,828 - EX31_RS19595 0.23 +0.4
550,828 - EX31_RS19595 0.23 +0.1
550,828 - EX31_RS19595 0.23 -0.9
550,828 - EX31_RS19595 0.23 +1.7
550,828 - EX31_RS19595 0.23 +0.8
550,828 - EX31_RS19595 0.23 -1.6
550,831 + EX31_RS19595 0.23 -0.4
550,831 + EX31_RS19595 0.23 +2.2
550,832 - EX31_RS19595 0.23 -2.4
550,832 - EX31_RS19595 0.23 -0.4
550,832 - EX31_RS19595 0.23 +0.5
550,832 - EX31_RS19595 0.23 +0.6
550,832 - EX31_RS19595 0.23 -0.3
550,832 - EX31_RS19595 0.23 +1.4
550,832 - EX31_RS19595 0.23 +1.0
550,832 - EX31_RS19595 0.23 +0.9
550,832 - EX31_RS19595 0.23 +0.5
550,835 + EX31_RS19595 0.24 +0.7
550,835 + EX31_RS19595 0.24 -0.3
550,836 - EX31_RS19595 0.24 +0.3
550,836 - EX31_RS19595 0.24 -0.3
550,836 - EX31_RS19595 0.24 -0.8
550,836 - EX31_RS19595 0.24 +0.7
550,836 - EX31_RS19595 0.24 -0.4
550,836 - EX31_RS19595 0.24 +0.7
550,836 - EX31_RS19595 0.24 -0.0
550,836 - EX31_RS19595 0.24 -0.4
550,836 - EX31_RS19595 0.24 +1.5
550,867 + EX31_RS19595 0.29 -0.7
550,867 + EX31_RS19595 0.29 +0.9
550,867 + EX31_RS19595 0.29 +3.2
550,868 - EX31_RS19595 0.29 +0.0
550,868 - EX31_RS19595 0.29 +1.3
550,868 - EX31_RS19595 0.29 +1.2
550,869 + EX31_RS19595 0.29 +0.1
550,869 + EX31_RS19595 0.29 -1.3
550,870 - EX31_RS19595 0.29 +0.7
550,870 - EX31_RS19595 0.29 +0.7
550,870 - EX31_RS19595 0.29 +0.5
550,870 - EX31_RS19595 0.29 -1.0
550,870 - EX31_RS19595 0.29 -1.7
550,870 - EX31_RS19595 0.29 +0.1
550,870 - EX31_RS19595 0.29 -1.6
550,870 - EX31_RS19595 0.29 -2.4
550,870 - EX31_RS19595 0.29 +0.2
550,888 - EX31_RS19595 0.32 -0.9
550,894 + EX31_RS19595 0.33 -0.9
550,894 + EX31_RS19595 0.33 -1.9
550,894 + EX31_RS19595 0.33 +0.5
550,894 + EX31_RS19595 0.33 +0.9
550,894 + EX31_RS19595 0.33 -2.4
550,895 - EX31_RS19595 0.33 +0.7
550,895 - EX31_RS19595 0.33 -1.0
550,895 - EX31_RS19595 0.33 -0.0
550,895 - EX31_RS19595 0.33 +0.1
550,895 - EX31_RS19595 0.33 +1.7
550,895 - EX31_RS19595 0.33 +0.8
550,895 - EX31_RS19595 0.33 +1.9
550,895 - EX31_RS19595 0.33 -0.2
550,895 - EX31_RS19595 0.33 -1.9
550,984 - EX31_RS19595 0.46 -0.3
550,990 + EX31_RS19595 0.47 -0.6
550,990 + EX31_RS19595 0.47 +2.3
550,990 + EX31_RS19595 0.47 -0.1
550,990 + EX31_RS19595 0.47 +1.3
550,991 - EX31_RS19595 0.47 +0.1
550,991 - EX31_RS19595 0.47 -0.9
550,991 - EX31_RS19595 0.47 +0.3
551,038 + EX31_RS19595 0.54 +0.9
551,061 - EX31_RS19595 0.58 +0.1
551,071 + EX31_RS19595 0.59 -0.7
551,076 + EX31_RS19595 0.60 +0.3
551,076 + EX31_RS19595 0.60 -1.6
551,076 + EX31_RS19595 0.60 -0.3
551,076 + EX31_RS19595 0.60 -1.1
551,076 + EX31_RS19595 0.60 -1.1
551,076 + EX31_RS19595 0.60 -0.4
551,077 - EX31_RS19595 0.60 +0.6
551,077 - EX31_RS19595 0.60 +0.4
551,077 - EX31_RS19595 0.60 +0.4
551,077 - EX31_RS19595 0.60 +0.7
551,077 - EX31_RS19595 0.60 +0.9
551,077 - EX31_RS19595 0.60 +1.1
551,077 - EX31_RS19595 0.60 +1.8
551,077 - EX31_RS19595 0.60 -1.0
551,077 - EX31_RS19595 0.60 -0.1
551,077 - EX31_RS19595 0.60 -1.0
551,077 - EX31_RS19595 0.60 -0.1
551,077 - EX31_RS19595 0.60 +1.8
551,077 - EX31_RS19595 0.60 +0.9
551,077 - EX31_RS19595 0.60 -0.6
551,077 - EX31_RS19595 0.60 -0.1
551,077 - EX31_RS19595 0.60 +1.9
551,077 - EX31_RS19595 0.60 +0.7
551,077 - EX31_RS19595 0.60 +1.0
551,175 - EX31_RS19595 0.75 -0.5
551,175 - EX31_RS19595 0.75 +0.1
551,183 + EX31_RS19595 0.76 -0.7
551,183 + EX31_RS19595 0.76 -0.7
551,183 + EX31_RS19595 0.76 -1.8
551,184 - EX31_RS19595 0.76 -0.7
551,272 - EX31_RS19595 0.89 -1.8
551,306 - +0.8
551,369 + +0.1
551,369 + +0.7
551,382 - -1.0
551,382 - -0.5
551,406 - +1.0
551,480 + +0.1
551,480 + -1.1
551,481 - -1.3
551,481 - +0.5
551,483 - -1.7
551,483 - -1.4
551,483 - +0.9
551,483 - -1.9
551,537 - EX31_RS19600 0.16 +1.6
551,628 + EX31_RS19600 0.27 -0.1
551,629 - EX31_RS19600 0.27 -2.1
551,651 + EX31_RS19600 0.30 -0.4
551,651 + EX31_RS19600 0.30 -0.1
551,651 + EX31_RS19600 0.30 -2.7
551,651 + EX31_RS19600 0.30 +0.9
551,651 + EX31_RS19600 0.30 -1.4
551,651 + EX31_RS19600 0.30 -0.9
551,651 + EX31_RS19600 0.30 -1.6
551,651 + EX31_RS19600 0.30 -1.3
551,652 - EX31_RS19600 0.30 -1.1
551,652 - EX31_RS19600 0.30 -2.1
551,652 - EX31_RS19600 0.30 +0.4
551,652 - EX31_RS19600 0.30 -0.9
551,652 - EX31_RS19600 0.30 -1.4
551,652 - EX31_RS19600 0.30 -0.1
551,652 - EX31_RS19600 0.30 -0.9
551,652 - EX31_RS19600 0.30 -1.4
551,652 - EX31_RS19600 0.30 +0.3
551,652 - EX31_RS19600 0.30 -2.6
551,687 + EX31_RS19600 0.34 -0.7
551,688 - EX31_RS19600 0.34 -1.1
551,847 + EX31_RS19600 0.53 -0.1
551,849 + EX31_RS19600 0.54 -0.7
551,850 - EX31_RS19600 0.54 -1.7
551,850 - EX31_RS19600 0.54 -1.8
551,853 + EX31_RS19600 0.54 +0.6
551,854 - EX31_RS19600 0.54 -0.9
551,854 - EX31_RS19600 0.54 +0.1
551,859 - EX31_RS19600 0.55 -0.1
551,935 - EX31_RS19600 0.64 -1.1
551,935 - EX31_RS19600 0.64 -2.6
552,010 + EX31_RS19600 0.73 -0.1
552,011 - EX31_RS19600 0.73 +0.9
552,011 - EX31_RS19600 0.73 +0.9
552,011 - EX31_RS19600 0.73 -1.0
552,043 - EX31_RS19600 0.77 +0.6
552,150 - EX31_RS19600 0.90 -1.7
552,150 - EX31_RS19600 0.90 -0.8
552,164 + -0.1
552,165 - -0.7
552,165 - -0.7
552,165 - +0.1
552,234 + +0.9
552,234 + -0.7
552,235 - +0.4
552,235 - -1.0
552,235 - -0.9
552,235 - +0.3
552,235 - +0.9
552,334 - +0.0
552,334 - +0.0
552,356 + EX31_RS19605 0.12 -0.7
552,363 - EX31_RS19605 0.12 -1.1
552,437 + EX31_RS19605 0.20 -0.8
552,438 - EX31_RS19605 0.20 -0.3
552,438 - EX31_RS19605 0.20 +0.8
552,438 - EX31_RS19605 0.20 +1.7
552,441 - EX31_RS19605 0.20 -0.4
552,441 - EX31_RS19605 0.20 -0.1
552,441 - EX31_RS19605 0.20 -1.8
552,503 + EX31_RS19605 0.26 -1.7
552,504 - EX31_RS19605 0.26 -0.1
552,504 - EX31_RS19605 0.26 -0.6
552,527 - EX31_RS19605 0.29 +1.9
552,527 - EX31_RS19605 0.29 +2.2
553,003 + EX31_RS19605 0.76 -1.4
553,003 + EX31_RS19605 0.76 +0.9
553,003 + EX31_RS19605 0.76 +0.9
553,004 - EX31_RS19605 0.76 +0.2
553,004 - EX31_RS19605 0.76 -0.9
553,004 - EX31_RS19605 0.76 +0.5
553,004 - EX31_RS19605 0.76 +0.6
553,004 - EX31_RS19605 0.76 -0.2
553,004 - EX31_RS19605 0.76 +0.4
553,101 - EX31_RS19605 0.85 -1.0
553,179 + -0.1
553,180 - +0.6
553,180 - -1.3
553,229 + -2.4
553,230 - -2.4

Or see this region's nucleotide sequence