Strain Fitness in Rahnella sp. WP5 around EX31_RS19500

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19490 and EX31_RS19495 overlap by 8 nucleotidesEX31_RS19495 and EX31_RS19500 are separated by 104 nucleotidesEX31_RS19500 and EX31_RS19505 are separated by 50 nucleotidesEX31_RS19505 and EX31_RS19510 are separated by 138 nucleotides EX31_RS19490: EX31_RS19490 - transketolase family protein, at 528,988 to 529,941 _RS19490 EX31_RS19495: EX31_RS19495 - transketolase, at 529,934 to 530,767 _RS19495 EX31_RS19500: EX31_RS19500 - PTS ascorbate transporter subunit IIC, at 530,872 to 532,248 _RS19500 EX31_RS19505: EX31_RS19505 - PTS sugar transporter subunit IIB, at 532,299 to 532,580 _RS19505 EX31_RS19510: EX31_RS19510 - PTS sugar transporter subunit IIA, at 532,719 to 533,162 _RS19510 Position (kb) 530 531 532 533Strain fitness (log2 ratio) -2 -1 0 1 2 3at 529.887 kb on - strandat 530.035 kb on - strand, within EX31_RS19495at 530.035 kb on - strand, within EX31_RS19495at 530.035 kb on - strand, within EX31_RS19495at 530.035 kb on - strand, within EX31_RS19495at 530.153 kb on + strand, within EX31_RS19495at 530.153 kb on + strand, within EX31_RS19495at 530.153 kb on + strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.200 kb on + strand, within EX31_RS19495at 530.201 kb on - strand, within EX31_RS19495at 530.201 kb on - strand, within EX31_RS19495at 530.241 kb on + strand, within EX31_RS19495at 530.284 kb on + strand, within EX31_RS19495at 530.284 kb on + strand, within EX31_RS19495at 530.372 kb on - strand, within EX31_RS19495at 530.501 kb on + strand, within EX31_RS19495at 530.502 kb on - strand, within EX31_RS19495at 530.544 kb on + strand, within EX31_RS19495at 530.544 kb on + strand, within EX31_RS19495at 530.544 kb on + strand, within EX31_RS19495at 530.544 kb on + strand, within EX31_RS19495at 530.583 kb on + strand, within EX31_RS19495at 530.584 kb on - strand, within EX31_RS19495at 530.638 kb on - strand, within EX31_RS19495at 530.638 kb on - strand, within EX31_RS19495at 530.679 kb on + strand, within EX31_RS19495at 530.728 kb on + strandat 530.729 kb on - strandat 530.774 kb on + strandat 530.774 kb on + strandat 530.775 kb on - strandat 530.775 kb on - strandat 530.775 kb on - strandat 530.775 kb on - strandat 530.786 kb on + strandat 530.787 kb on - strandat 530.797 kb on + strandat 530.798 kb on - strandat 530.798 kb on - strandat 530.816 kb on + strandat 530.817 kb on - strandat 530.858 kb on - strandat 530.858 kb on - strandat 530.873 kb on + strandat 530.874 kb on - strandat 530.874 kb on - strandat 530.918 kb on + strandat 530.918 kb on + strandat 530.918 kb on + strandat 530.919 kb on - strandat 530.919 kb on - strandat 530.919 kb on - strandat 530.919 kb on - strandat 530.947 kb on - strandat 530.947 kb on - strandat 530.982 kb on + strandat 531.049 kb on - strand, within EX31_RS19500at 531.100 kb on - strand, within EX31_RS19500at 531.100 kb on - strand, within EX31_RS19500at 531.100 kb on - strand, within EX31_RS19500at 531.100 kb on - strand, within EX31_RS19500at 531.167 kb on - strand, within EX31_RS19500at 531.167 kb on - strand, within EX31_RS19500at 531.167 kb on - strand, within EX31_RS19500at 531.308 kb on + strand, within EX31_RS19500at 531.349 kb on - strand, within EX31_RS19500at 531.448 kb on - strand, within EX31_RS19500at 531.448 kb on - strand, within EX31_RS19500at 531.467 kb on + strand, within EX31_RS19500at 531.468 kb on - strand, within EX31_RS19500at 531.476 kb on + strand, within EX31_RS19500at 531.476 kb on + strand, within EX31_RS19500at 531.477 kb on - strand, within EX31_RS19500at 531.477 kb on - strand, within EX31_RS19500at 531.494 kb on + strand, within EX31_RS19500at 531.494 kb on + strand, within EX31_RS19500at 531.495 kb on - strand, within EX31_RS19500at 531.495 kb on - strand, within EX31_RS19500at 531.495 kb on - strand, within EX31_RS19500at 531.535 kb on - strand, within EX31_RS19500at 531.543 kb on - strand, within EX31_RS19500at 531.546 kb on + strand, within EX31_RS19500at 531.546 kb on + strand, within EX31_RS19500at 531.546 kb on + strand, within EX31_RS19500at 531.546 kb on + strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.567 kb on + strand, within EX31_RS19500at 531.568 kb on - strand, within EX31_RS19500at 531.625 kb on - strand, within EX31_RS19500at 531.668 kb on - strand, within EX31_RS19500at 531.674 kb on + strand, within EX31_RS19500at 531.734 kb on + strand, within EX31_RS19500at 531.734 kb on + strand, within EX31_RS19500at 531.734 kb on + strand, within EX31_RS19500at 531.734 kb on + strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.846 kb on + strand, within EX31_RS19500at 531.847 kb on - strand, within EX31_RS19500at 531.847 kb on - strand, within EX31_RS19500at 531.847 kb on - strand, within EX31_RS19500at 531.847 kb on - strand, within EX31_RS19500at 531.847 kb on - strand, within EX31_RS19500at 531.847 kb on - strand, within EX31_RS19500at 531.847 kb on - strand, within EX31_RS19500at 531.856 kb on - strand, within EX31_RS19500at 531.857 kb on + strand, within EX31_RS19500at 531.857 kb on + strand, within EX31_RS19500at 531.857 kb on + strand, within EX31_RS19500at 531.858 kb on - strand, within EX31_RS19500at 531.858 kb on - strand, within EX31_RS19500at 531.858 kb on - strand, within EX31_RS19500at 531.858 kb on - strand, within EX31_RS19500at 531.858 kb on - strand, within EX31_RS19500at 531.888 kb on - strand, within EX31_RS19500at 531.888 kb on - strand, within EX31_RS19500at 531.888 kb on - strand, within EX31_RS19500at 531.891 kb on + strand, within EX31_RS19500at 531.892 kb on - strand, within EX31_RS19500at 531.947 kb on - strand, within EX31_RS19500at 531.947 kb on - strand, within EX31_RS19500at 532.009 kb on - strand, within EX31_RS19500at 532.009 kb on - strand, within EX31_RS19500at 532.011 kb on + strand, within EX31_RS19500at 532.058 kb on - strand, within EX31_RS19500at 532.070 kb on - strand, within EX31_RS19500at 532.096 kb on + strand, within EX31_RS19500at 532.097 kb on - strand, within EX31_RS19500at 532.109 kb on - strand, within EX31_RS19500at 532.193 kb on - strandat 532.210 kb on + strandat 532.211 kb on - strandat 532.212 kb on + strandat 532.249 kb on - strandat 532.249 kb on - strandat 532.249 kb on - strandat 532.368 kb on - strand, within EX31_RS19505at 532.370 kb on + strand, within EX31_RS19505at 532.371 kb on - strand, within EX31_RS19505at 532.380 kb on + strand, within EX31_RS19505at 532.381 kb on - strand, within EX31_RS19505at 532.536 kb on - strand, within EX31_RS19505at 532.584 kb on - strandat 532.653 kb on - strandat 532.653 kb on - strandat 532.708 kb on - strandat 532.711 kb on - strandat 532.720 kb on + strandat 532.732 kb on - strandat 532.734 kb on - strandat 532.771 kb on - strand, within EX31_RS19510at 532.829 kb on + strand, within EX31_RS19510at 532.830 kb on - strand, within EX31_RS19510at 532.870 kb on + strand, within EX31_RS19510at 532.870 kb on + strand, within EX31_RS19510at 532.871 kb on - strand, within EX31_RS19510at 532.871 kb on - strand, within EX31_RS19510at 533.000 kb on - strand, within EX31_RS19510at 533.031 kb on - strand, within EX31_RS19510at 533.042 kb on - strand, within EX31_RS19510at 533.052 kb on - strand, within EX31_RS19510at 533.162 kb on + strandat 533.162 kb on + strandat 533.162 kb on + strandat 533.163 kb on - strandat 533.163 kb on - strandat 533.163 kb on - strandat 533.163 kb on - strandat 533.163 kb on - strandat 533.185 kb on + strandat 533.235 kb on + strandat 533.235 kb on + strandat 533.235 kb on + strandat 533.235 kb on + strandat 533.235 kb on + strandat 533.236 kb on - strandat 533.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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529,887 - -0.9
530,035 - EX31_RS19495 0.12 +1.0
530,035 - EX31_RS19495 0.12 -1.7
530,035 - EX31_RS19495 0.12 -1.6
530,035 - EX31_RS19495 0.12 -1.9
530,153 + EX31_RS19495 0.26 -0.1
530,153 + EX31_RS19495 0.26 +0.3
530,153 + EX31_RS19495 0.26 +0.1
530,154 - EX31_RS19495 0.26 +0.5
530,154 - EX31_RS19495 0.26 -1.5
530,154 - EX31_RS19495 0.26 +2.6
530,154 - EX31_RS19495 0.26 -0.1
530,154 - EX31_RS19495 0.26 +0.5
530,154 - EX31_RS19495 0.26 +1.7
530,154 - EX31_RS19495 0.26 -1.5
530,154 - EX31_RS19495 0.26 +0.5
530,200 + EX31_RS19495 0.32 +0.5
530,201 - EX31_RS19495 0.32 +0.6
530,201 - EX31_RS19495 0.32 +0.3
530,241 + EX31_RS19495 0.37 +1.9
530,284 + EX31_RS19495 0.42 +1.1
530,284 + EX31_RS19495 0.42 +2.5
530,372 - EX31_RS19495 0.53 -0.7
530,501 + EX31_RS19495 0.68 +0.3
530,502 - EX31_RS19495 0.68 -0.3
530,544 + EX31_RS19495 0.73 -0.9
530,544 + EX31_RS19495 0.73 +3.2
530,544 + EX31_RS19495 0.73 -0.6
530,544 + EX31_RS19495 0.73 -1.3
530,583 + EX31_RS19495 0.78 -0.5
530,584 - EX31_RS19495 0.78 +2.2
530,638 - EX31_RS19495 0.84 -2.1
530,638 - EX31_RS19495 0.84 +1.0
530,679 + EX31_RS19495 0.89 -1.5
530,728 + +0.0
530,729 - -0.1
530,774 + +0.9
530,774 + +0.3
530,775 - +0.5
530,775 - -0.1
530,775 - +1.5
530,775 - -1.1
530,786 + +1.8
530,787 - +0.0
530,797 + -0.5
530,798 - -0.4
530,798 - +0.3
530,816 + -0.9
530,817 - -0.2
530,858 - +0.5
530,858 - +1.1
530,873 + -0.1
530,874 - -0.9
530,874 - -2.3
530,918 + +0.6
530,918 + +0.9
530,918 + +0.6
530,919 - +1.1
530,919 - -0.7
530,919 - +0.6
530,919 - +0.1
530,947 - -0.3
530,947 - +0.9
530,982 + +0.2
531,049 - EX31_RS19500 0.13 -0.1
531,100 - EX31_RS19500 0.17 +0.6
531,100 - EX31_RS19500 0.17 +0.9
531,100 - EX31_RS19500 0.17 -0.5
531,100 - EX31_RS19500 0.17 -0.1
531,167 - EX31_RS19500 0.21 +1.2
531,167 - EX31_RS19500 0.21 +0.7
531,167 - EX31_RS19500 0.21 -0.6
531,308 + EX31_RS19500 0.32 -2.3
531,349 - EX31_RS19500 0.35 -1.1
531,448 - EX31_RS19500 0.42 +1.1
531,448 - EX31_RS19500 0.42 -1.0
531,467 + EX31_RS19500 0.43 -1.5
531,468 - EX31_RS19500 0.43 +0.9
531,476 + EX31_RS19500 0.44 +0.3
531,476 + EX31_RS19500 0.44 -0.7
531,477 - EX31_RS19500 0.44 +0.3
531,477 - EX31_RS19500 0.44 -0.1
531,494 + EX31_RS19500 0.45 +1.2
531,494 + EX31_RS19500 0.45 -1.1
531,495 - EX31_RS19500 0.45 +0.1
531,495 - EX31_RS19500 0.45 -1.5
531,495 - EX31_RS19500 0.45 -0.1
531,535 - EX31_RS19500 0.48 +1.3
531,543 - EX31_RS19500 0.49 +1.5
531,546 + EX31_RS19500 0.49 +0.6
531,546 + EX31_RS19500 0.49 -0.7
531,546 + EX31_RS19500 0.49 +0.5
531,546 + EX31_RS19500 0.49 +0.2
531,547 - EX31_RS19500 0.49 +0.5
531,547 - EX31_RS19500 0.49 -1.7
531,547 - EX31_RS19500 0.49 +0.3
531,547 - EX31_RS19500 0.49 +0.3
531,547 - EX31_RS19500 0.49 -0.5
531,547 - EX31_RS19500 0.49 -0.3
531,547 - EX31_RS19500 0.49 +1.0
531,567 + EX31_RS19500 0.50 +0.1
531,568 - EX31_RS19500 0.51 -1.8
531,625 - EX31_RS19500 0.55 -0.4
531,668 - EX31_RS19500 0.58 +0.9
531,674 + EX31_RS19500 0.58 +0.9
531,734 + EX31_RS19500 0.63 +0.4
531,734 + EX31_RS19500 0.63 -1.4
531,734 + EX31_RS19500 0.63 -2.7
531,734 + EX31_RS19500 0.63 +0.9
531,735 - EX31_RS19500 0.63 +1.9
531,735 - EX31_RS19500 0.63 +0.6
531,735 - EX31_RS19500 0.63 +0.2
531,735 - EX31_RS19500 0.63 +1.7
531,735 - EX31_RS19500 0.63 -1.1
531,735 - EX31_RS19500 0.63 -0.6
531,735 - EX31_RS19500 0.63 -0.1
531,846 + EX31_RS19500 0.71 +0.9
531,847 - EX31_RS19500 0.71 -1.4
531,847 - EX31_RS19500 0.71 -0.8
531,847 - EX31_RS19500 0.71 +0.5
531,847 - EX31_RS19500 0.71 -0.7
531,847 - EX31_RS19500 0.71 -1.6
531,847 - EX31_RS19500 0.71 -0.7
531,847 - EX31_RS19500 0.71 +1.9
531,856 - EX31_RS19500 0.71 +0.0
531,857 + EX31_RS19500 0.72 +1.1
531,857 + EX31_RS19500 0.72 +0.6
531,857 + EX31_RS19500 0.72 -0.1
531,858 - EX31_RS19500 0.72 -0.2
531,858 - EX31_RS19500 0.72 -2.6
531,858 - EX31_RS19500 0.72 +0.7
531,858 - EX31_RS19500 0.72 +0.1
531,858 - EX31_RS19500 0.72 +0.2
531,888 - EX31_RS19500 0.74 -0.5
531,888 - EX31_RS19500 0.74 -1.7
531,888 - EX31_RS19500 0.74 +0.6
531,891 + EX31_RS19500 0.74 -1.1
531,892 - EX31_RS19500 0.74 -0.6
531,947 - EX31_RS19500 0.78 -0.1
531,947 - EX31_RS19500 0.78 -1.7
532,009 - EX31_RS19500 0.83 -2.3
532,009 - EX31_RS19500 0.83 -0.4
532,011 + EX31_RS19500 0.83 -0.7
532,058 - EX31_RS19500 0.86 -1.4
532,070 - EX31_RS19500 0.87 -0.4
532,096 + EX31_RS19500 0.89 -0.1
532,097 - EX31_RS19500 0.89 +1.0
532,109 - EX31_RS19500 0.90 +0.9
532,193 - -1.7
532,210 + +0.7
532,211 - +0.9
532,212 + -0.6
532,249 - -2.6
532,249 - +0.9
532,249 - +0.9
532,368 - EX31_RS19505 0.24 +0.9
532,370 + EX31_RS19505 0.25 -0.7
532,371 - EX31_RS19505 0.26 -0.1
532,380 + EX31_RS19505 0.29 -2.1
532,381 - EX31_RS19505 0.29 +0.3
532,536 - EX31_RS19505 0.84 -0.7
532,584 - +0.9
532,653 - +0.3
532,653 - -1.9
532,708 - +2.3
532,711 - +0.9
532,720 + +0.9
532,732 - -0.1
532,734 - +0.6
532,771 - EX31_RS19510 0.12 +0.9
532,829 + EX31_RS19510 0.25 +0.1
532,830 - EX31_RS19510 0.25 -0.1
532,870 + EX31_RS19510 0.34 -1.0
532,870 + EX31_RS19510 0.34 +0.9
532,871 - EX31_RS19510 0.34 +1.0
532,871 - EX31_RS19510 0.34 -1.0
533,000 - EX31_RS19510 0.63 +0.9
533,031 - EX31_RS19510 0.70 +0.4
533,042 - EX31_RS19510 0.73 +0.0
533,052 - EX31_RS19510 0.75 +0.4
533,162 + +0.4
533,162 + +0.4
533,162 + +0.6
533,163 - -0.4
533,163 - -2.6
533,163 - +1.5
533,163 - -1.2
533,163 - +1.1
533,185 + +1.9
533,235 + +0.2
533,235 + -0.1
533,235 + +0.1
533,235 + -0.2
533,235 + -0.8
533,236 - +0.7
533,246 + +1.1

Or see this region's nucleotide sequence