Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19490 and EX31_RS19495 overlap by 8 nucleotides EX31_RS19495 and EX31_RS19500 are separated by 104 nucleotides
EX31_RS19490: EX31_RS19490 - transketolase family protein, at 528,988 to 529,941
_RS19490
EX31_RS19495: EX31_RS19495 - transketolase, at 529,934 to 530,767
_RS19495
EX31_RS19500: EX31_RS19500 - PTS ascorbate transporter subunit IIC, at 530,872 to 532,248
_RS19500
Position (kb)
529
530
531 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 529.017 kb on + strand at 529.017 kb on + strand at 529.018 kb on - strand at 529.037 kb on + strand at 529.164 kb on + strand, within EX31_RS19490 at 529.165 kb on - strand, within EX31_RS19490 at 529.165 kb on - strand, within EX31_RS19490 at 529.165 kb on - strand, within EX31_RS19490 at 529.165 kb on - strand, within EX31_RS19490 at 529.165 kb on - strand, within EX31_RS19490 at 529.165 kb on - strand, within EX31_RS19490 at 529.208 kb on + strand, within EX31_RS19490 at 529.209 kb on - strand, within EX31_RS19490 at 529.245 kb on + strand, within EX31_RS19490 at 529.321 kb on - strand, within EX31_RS19490 at 529.321 kb on - strand, within EX31_RS19490 at 529.384 kb on - strand, within EX31_RS19490 at 529.384 kb on - strand, within EX31_RS19490 at 529.432 kb on - strand, within EX31_RS19490 at 529.546 kb on - strand, within EX31_RS19490 at 529.546 kb on - strand, within EX31_RS19490 at 529.560 kb on + strand, within EX31_RS19490 at 529.560 kb on + strand, within EX31_RS19490 at 529.560 kb on + strand, within EX31_RS19490 at 529.560 kb on + strand, within EX31_RS19490 at 529.560 kb on + strand, within EX31_RS19490 at 529.560 kb on + strand, within EX31_RS19490 at 529.561 kb on - strand, within EX31_RS19490 at 529.561 kb on - strand, within EX31_RS19490 at 529.561 kb on - strand, within EX31_RS19490 at 529.561 kb on - strand, within EX31_RS19490 at 529.561 kb on - strand, within EX31_RS19490 at 529.561 kb on - strand, within EX31_RS19490 at 529.621 kb on - strand, within EX31_RS19490 at 529.621 kb on - strand, within EX31_RS19490 at 529.621 kb on - strand, within EX31_RS19490 at 529.644 kb on + strand, within EX31_RS19490 at 529.645 kb on - strand, within EX31_RS19490 at 529.645 kb on - strand, within EX31_RS19490 at 529.645 kb on - strand, within EX31_RS19490 at 529.645 kb on - strand, within EX31_RS19490 at 529.645 kb on - strand, within EX31_RS19490 at 529.645 kb on - strand, within EX31_RS19490 at 529.645 kb on - strand, within EX31_RS19490 at 529.689 kb on + strand, within EX31_RS19490 at 529.690 kb on - strand, within EX31_RS19490 at 529.690 kb on - strand, within EX31_RS19490 at 529.768 kb on - strand, within EX31_RS19490 at 529.796 kb on - strand, within EX31_RS19490 at 529.858 kb on + strand at 529.887 kb on - strand at 530.035 kb on - strand, within EX31_RS19495 at 530.035 kb on - strand, within EX31_RS19495 at 530.035 kb on - strand, within EX31_RS19495 at 530.035 kb on - strand, within EX31_RS19495 at 530.153 kb on + strand, within EX31_RS19495 at 530.153 kb on + strand, within EX31_RS19495 at 530.153 kb on + strand, within EX31_RS19495 at 530.154 kb on - strand, within EX31_RS19495 at 530.154 kb on - strand, within EX31_RS19495 at 530.154 kb on - strand, within EX31_RS19495 at 530.154 kb on - strand, within EX31_RS19495 at 530.154 kb on - strand, within EX31_RS19495 at 530.154 kb on - strand, within EX31_RS19495 at 530.154 kb on - strand, within EX31_RS19495 at 530.154 kb on - strand, within EX31_RS19495 at 530.200 kb on + strand, within EX31_RS19495 at 530.201 kb on - strand, within EX31_RS19495 at 530.201 kb on - strand, within EX31_RS19495 at 530.241 kb on + strand, within EX31_RS19495 at 530.284 kb on + strand, within EX31_RS19495 at 530.284 kb on + strand, within EX31_RS19495 at 530.372 kb on - strand, within EX31_RS19495 at 530.501 kb on + strand, within EX31_RS19495 at 530.502 kb on - strand, within EX31_RS19495 at 530.544 kb on + strand, within EX31_RS19495 at 530.544 kb on + strand, within EX31_RS19495 at 530.544 kb on + strand, within EX31_RS19495 at 530.544 kb on + strand, within EX31_RS19495 at 530.583 kb on + strand, within EX31_RS19495 at 530.584 kb on - strand, within EX31_RS19495 at 530.638 kb on - strand, within EX31_RS19495 at 530.638 kb on - strand, within EX31_RS19495 at 530.679 kb on + strand, within EX31_RS19495 at 530.728 kb on + strand at 530.729 kb on - strand at 530.774 kb on + strand at 530.774 kb on + strand at 530.775 kb on - strand at 530.775 kb on - strand at 530.775 kb on - strand at 530.775 kb on - strand at 530.786 kb on + strand at 530.787 kb on - strand at 530.797 kb on + strand at 530.798 kb on - strand at 530.798 kb on - strand at 530.816 kb on + strand at 530.817 kb on - strand at 530.858 kb on - strand at 530.858 kb on - strand at 530.873 kb on + strand at 530.874 kb on - strand at 530.874 kb on - strand at 530.918 kb on + strand at 530.918 kb on + strand at 530.918 kb on + strand at 530.919 kb on - strand at 530.919 kb on - strand at 530.919 kb on - strand at 530.919 kb on - strand at 530.947 kb on - strand at 530.947 kb on - strand at 530.982 kb on + strand at 531.049 kb on - strand, within EX31_RS19500 at 531.100 kb on - strand, within EX31_RS19500 at 531.100 kb on - strand, within EX31_RS19500 at 531.100 kb on - strand, within EX31_RS19500 at 531.100 kb on - strand, within EX31_RS19500 at 531.167 kb on - strand, within EX31_RS19500 at 531.167 kb on - strand, within EX31_RS19500 at 531.167 kb on - strand, within EX31_RS19500 at 531.308 kb on + strand, within EX31_RS19500 at 531.349 kb on - strand, within EX31_RS19500 at 531.448 kb on - strand, within EX31_RS19500 at 531.448 kb on - strand, within EX31_RS19500 at 531.467 kb on + strand, within EX31_RS19500 at 531.468 kb on - strand, within EX31_RS19500 at 531.476 kb on + strand, within EX31_RS19500 at 531.476 kb on + strand, within EX31_RS19500 at 531.477 kb on - strand, within EX31_RS19500 at 531.477 kb on - strand, within EX31_RS19500 at 531.494 kb on + strand, within EX31_RS19500 at 531.494 kb on + strand, within EX31_RS19500 at 531.495 kb on - strand, within EX31_RS19500 at 531.495 kb on - strand, within EX31_RS19500 at 531.495 kb on - strand, within EX31_RS19500 at 531.535 kb on - strand, within EX31_RS19500 at 531.543 kb on - strand, within EX31_RS19500 at 531.546 kb on + strand, within EX31_RS19500 at 531.546 kb on + strand, within EX31_RS19500 at 531.546 kb on + strand, within EX31_RS19500 at 531.546 kb on + strand, within EX31_RS19500 at 531.547 kb on - strand, within EX31_RS19500 at 531.547 kb on - strand, within EX31_RS19500 at 531.547 kb on - strand, within EX31_RS19500 at 531.547 kb on - strand, within EX31_RS19500 at 531.547 kb on - strand, within EX31_RS19500 at 531.547 kb on - strand, within EX31_RS19500 at 531.547 kb on - strand, within EX31_RS19500 at 531.567 kb on + strand, within EX31_RS19500 at 531.568 kb on - strand, within EX31_RS19500 at 531.625 kb on - strand, within EX31_RS19500 at 531.668 kb on - strand, within EX31_RS19500 at 531.674 kb on + strand, within EX31_RS19500 at 531.734 kb on + strand, within EX31_RS19500 at 531.734 kb on + strand, within EX31_RS19500 at 531.734 kb on + strand, within EX31_RS19500 at 531.734 kb on + strand, within EX31_RS19500 at 531.735 kb on - strand, within EX31_RS19500 at 531.735 kb on - strand, within EX31_RS19500 at 531.735 kb on - strand, within EX31_RS19500 at 531.735 kb on - strand, within EX31_RS19500 at 531.735 kb on - strand, within EX31_RS19500 at 531.735 kb on - strand, within EX31_RS19500 at 531.735 kb on - strand, within EX31_RS19500
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 529,017 + +2.2 529,017 + -3.0 529,018 - -0.8 529,037 + +0.1 529,164 + EX31_RS19490 0.18 -0.7 529,165 - EX31_RS19490 0.19 +0.5 529,165 - EX31_RS19490 0.19 -1.1 529,165 - EX31_RS19490 0.19 -0.9 529,165 - EX31_RS19490 0.19 +0.4 529,165 - EX31_RS19490 0.19 +0.5 529,165 - EX31_RS19490 0.19 +0.1 529,208 + EX31_RS19490 0.23 -2.3 529,209 - EX31_RS19490 0.23 +0.1 529,245 + EX31_RS19490 0.27 -1.1 529,321 - EX31_RS19490 0.35 +1.6 529,321 - EX31_RS19490 0.35 +0.5 529,384 - EX31_RS19490 0.42 +0.2 529,384 - EX31_RS19490 0.42 -0.1 529,432 - EX31_RS19490 0.47 -0.6 529,546 - EX31_RS19490 0.58 -1.3 529,546 - EX31_RS19490 0.58 -0.2 529,560 + EX31_RS19490 0.60 +0.0 529,560 + EX31_RS19490 0.60 -0.1 529,560 + EX31_RS19490 0.60 -0.1 529,560 + EX31_RS19490 0.60 -0.1 529,560 + EX31_RS19490 0.60 +1.5 529,560 + EX31_RS19490 0.60 -2.6 529,561 - EX31_RS19490 0.60 -0.7 529,561 - EX31_RS19490 0.60 -1.5 529,561 - EX31_RS19490 0.60 +0.1 529,561 - EX31_RS19490 0.60 +0.7 529,561 - EX31_RS19490 0.60 +3.7 529,561 - EX31_RS19490 0.60 +1.9 529,621 - EX31_RS19490 0.66 +1.3 529,621 - EX31_RS19490 0.66 +0.5 529,621 - EX31_RS19490 0.66 -1.3 529,644 + EX31_RS19490 0.69 +0.8 529,645 - EX31_RS19490 0.69 -1.0 529,645 - EX31_RS19490 0.69 -0.1 529,645 - EX31_RS19490 0.69 -0.1 529,645 - EX31_RS19490 0.69 +0.7 529,645 - EX31_RS19490 0.69 +0.4 529,645 - EX31_RS19490 0.69 +3.2 529,645 - EX31_RS19490 0.69 -0.5 529,689 + EX31_RS19490 0.73 +0.5 529,690 - EX31_RS19490 0.74 +0.2 529,690 - EX31_RS19490 0.74 +1.5 529,768 - EX31_RS19490 0.82 -0.7 529,796 - EX31_RS19490 0.85 -2.2 529,858 + +1.4 529,887 - -0.9 530,035 - EX31_RS19495 0.12 +1.0 530,035 - EX31_RS19495 0.12 -1.7 530,035 - EX31_RS19495 0.12 -1.6 530,035 - EX31_RS19495 0.12 -1.9 530,153 + EX31_RS19495 0.26 -0.1 530,153 + EX31_RS19495 0.26 +0.3 530,153 + EX31_RS19495 0.26 +0.1 530,154 - EX31_RS19495 0.26 +0.5 530,154 - EX31_RS19495 0.26 -1.5 530,154 - EX31_RS19495 0.26 +2.6 530,154 - EX31_RS19495 0.26 -0.1 530,154 - EX31_RS19495 0.26 +0.5 530,154 - EX31_RS19495 0.26 +1.7 530,154 - EX31_RS19495 0.26 -1.5 530,154 - EX31_RS19495 0.26 +0.5 530,200 + EX31_RS19495 0.32 +0.5 530,201 - EX31_RS19495 0.32 +0.6 530,201 - EX31_RS19495 0.32 +0.3 530,241 + EX31_RS19495 0.37 +1.9 530,284 + EX31_RS19495 0.42 +1.1 530,284 + EX31_RS19495 0.42 +2.5 530,372 - EX31_RS19495 0.53 -0.7 530,501 + EX31_RS19495 0.68 +0.3 530,502 - EX31_RS19495 0.68 -0.3 530,544 + EX31_RS19495 0.73 -0.9 530,544 + EX31_RS19495 0.73 +3.2 530,544 + EX31_RS19495 0.73 -0.6 530,544 + EX31_RS19495 0.73 -1.3 530,583 + EX31_RS19495 0.78 -0.5 530,584 - EX31_RS19495 0.78 +2.2 530,638 - EX31_RS19495 0.84 -2.1 530,638 - EX31_RS19495 0.84 +1.0 530,679 + EX31_RS19495 0.89 -1.5 530,728 + +0.0 530,729 - -0.1 530,774 + +0.9 530,774 + +0.3 530,775 - +0.5 530,775 - -0.1 530,775 - +1.5 530,775 - -1.1 530,786 + +1.8 530,787 - +0.0 530,797 + -0.5 530,798 - -0.4 530,798 - +0.3 530,816 + -0.9 530,817 - -0.2 530,858 - +0.5 530,858 - +1.1 530,873 + -0.1 530,874 - -0.9 530,874 - -2.3 530,918 + +0.6 530,918 + +0.9 530,918 + +0.6 530,919 - +1.1 530,919 - -0.7 530,919 - +0.6 530,919 - +0.1 530,947 - -0.3 530,947 - +0.9 530,982 + +0.2 531,049 - EX31_RS19500 0.13 -0.1 531,100 - EX31_RS19500 0.17 +0.6 531,100 - EX31_RS19500 0.17 +0.9 531,100 - EX31_RS19500 0.17 -0.5 531,100 - EX31_RS19500 0.17 -0.1 531,167 - EX31_RS19500 0.21 +1.2 531,167 - EX31_RS19500 0.21 +0.7 531,167 - EX31_RS19500 0.21 -0.6 531,308 + EX31_RS19500 0.32 -2.3 531,349 - EX31_RS19500 0.35 -1.1 531,448 - EX31_RS19500 0.42 +1.1 531,448 - EX31_RS19500 0.42 -1.0 531,467 + EX31_RS19500 0.43 -1.5 531,468 - EX31_RS19500 0.43 +0.9 531,476 + EX31_RS19500 0.44 +0.3 531,476 + EX31_RS19500 0.44 -0.7 531,477 - EX31_RS19500 0.44 +0.3 531,477 - EX31_RS19500 0.44 -0.1 531,494 + EX31_RS19500 0.45 +1.2 531,494 + EX31_RS19500 0.45 -1.1 531,495 - EX31_RS19500 0.45 +0.1 531,495 - EX31_RS19500 0.45 -1.5 531,495 - EX31_RS19500 0.45 -0.1 531,535 - EX31_RS19500 0.48 +1.3 531,543 - EX31_RS19500 0.49 +1.5 531,546 + EX31_RS19500 0.49 +0.6 531,546 + EX31_RS19500 0.49 -0.7 531,546 + EX31_RS19500 0.49 +0.5 531,546 + EX31_RS19500 0.49 +0.2 531,547 - EX31_RS19500 0.49 +0.5 531,547 - EX31_RS19500 0.49 -1.7 531,547 - EX31_RS19500 0.49 +0.3 531,547 - EX31_RS19500 0.49 +0.3 531,547 - EX31_RS19500 0.49 -0.5 531,547 - EX31_RS19500 0.49 -0.3 531,547 - EX31_RS19500 0.49 +1.0 531,567 + EX31_RS19500 0.50 +0.1 531,568 - EX31_RS19500 0.51 -1.8 531,625 - EX31_RS19500 0.55 -0.4 531,668 - EX31_RS19500 0.58 +0.9 531,674 + EX31_RS19500 0.58 +0.9 531,734 + EX31_RS19500 0.63 +0.4 531,734 + EX31_RS19500 0.63 -1.4 531,734 + EX31_RS19500 0.63 -2.7 531,734 + EX31_RS19500 0.63 +0.9 531,735 - EX31_RS19500 0.63 +1.9 531,735 - EX31_RS19500 0.63 +0.6 531,735 - EX31_RS19500 0.63 +0.2 531,735 - EX31_RS19500 0.63 +1.7 531,735 - EX31_RS19500 0.63 -1.1 531,735 - EX31_RS19500 0.63 -0.6 531,735 - EX31_RS19500 0.63 -0.1
Or see this region's nucleotide sequence