Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18070 and EX31_RS18075 are separated by 81 nucleotides EX31_RS18075 and EX31_RS18080 are separated by 5 nucleotides
EX31_RS18070: EX31_RS18070 - membrane integrity-associated transporter subunit PqiA, at 173,237 to 174,508
_RS18070
EX31_RS18075: EX31_RS18075 - ABC transporter ATP-binding protein, at 174,590 to 176,494
_RS18075
EX31_RS18080: EX31_RS18080 - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 176,500 to 178,620
_RS18080
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 173.666 kb on + strand, within EX31_RS18070 at 173.684 kb on - strand, within EX31_RS18070 at 173.704 kb on + strand, within EX31_RS18070 at 173.706 kb on + strand, within EX31_RS18070 at 173.706 kb on + strand, within EX31_RS18070 at 173.706 kb on + strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.707 kb on - strand, within EX31_RS18070 at 173.753 kb on - strand, within EX31_RS18070 at 173.889 kb on - strand, within EX31_RS18070 at 173.976 kb on + strand, within EX31_RS18070 at 173.976 kb on + strand, within EX31_RS18070 at 173.977 kb on - strand, within EX31_RS18070 at 173.977 kb on - strand, within EX31_RS18070 at 173.977 kb on - strand, within EX31_RS18070 at 173.977 kb on - strand, within EX31_RS18070 at 173.977 kb on - strand, within EX31_RS18070 at 174.012 kb on + strand, within EX31_RS18070 at 174.012 kb on + strand, within EX31_RS18070 at 174.067 kb on + strand, within EX31_RS18070 at 174.067 kb on + strand, within EX31_RS18070 at 174.067 kb on + strand, within EX31_RS18070 at 174.068 kb on - strand, within EX31_RS18070 at 174.068 kb on - strand, within EX31_RS18070 at 174.068 kb on - strand, within EX31_RS18070 at 174.068 kb on - strand, within EX31_RS18070 at 174.068 kb on - strand, within EX31_RS18070 at 174.068 kb on - strand, within EX31_RS18070 at 174.090 kb on - strand, within EX31_RS18070 at 174.090 kb on - strand, within EX31_RS18070 at 174.128 kb on - strand, within EX31_RS18070 at 174.151 kb on + strand, within EX31_RS18070 at 174.220 kb on - strand, within EX31_RS18070 at 174.220 kb on - strand, within EX31_RS18070 at 174.391 kb on + strand at 174.470 kb on + strand at 174.470 kb on + strand at 174.470 kb on + strand at 174.470 kb on + strand at 174.471 kb on - strand at 174.471 kb on - strand at 174.471 kb on - strand at 174.471 kb on - strand at 174.471 kb on - strand at 174.471 kb on - strand at 174.471 kb on - strand at 174.471 kb on - strand at 174.471 kb on - strand at 174.473 kb on + strand at 174.473 kb on + strand at 174.473 kb on + strand at 174.473 kb on + strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.474 kb on - strand at 174.642 kb on - strand at 174.642 kb on - strand at 174.802 kb on + strand, within EX31_RS18075 at 174.803 kb on - strand, within EX31_RS18075 at 174.803 kb on - strand, within EX31_RS18075 at 174.803 kb on - strand, within EX31_RS18075 at 174.804 kb on + strand, within EX31_RS18075 at 174.804 kb on + strand, within EX31_RS18075 at 174.805 kb on - strand, within EX31_RS18075 at 174.805 kb on - strand, within EX31_RS18075 at 174.844 kb on + strand, within EX31_RS18075 at 174.845 kb on - strand, within EX31_RS18075 at 174.845 kb on - strand, within EX31_RS18075 at 174.845 kb on - strand, within EX31_RS18075 at 174.928 kb on - strand, within EX31_RS18075 at 174.939 kb on + strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.940 kb on - strand, within EX31_RS18075 at 174.992 kb on - strand, within EX31_RS18075 at 175.039 kb on - strand, within EX31_RS18075 at 175.157 kb on - strand, within EX31_RS18075 at 175.227 kb on + strand, within EX31_RS18075 at 175.235 kb on + strand, within EX31_RS18075 at 175.236 kb on - strand, within EX31_RS18075 at 175.236 kb on - strand, within EX31_RS18075 at 175.289 kb on - strand, within EX31_RS18075 at 175.301 kb on - strand, within EX31_RS18075 at 175.301 kb on - strand, within EX31_RS18075 at 175.301 kb on - strand, within EX31_RS18075 at 175.355 kb on - strand, within EX31_RS18075 at 175.355 kb on - strand, within EX31_RS18075 at 175.357 kb on + strand, within EX31_RS18075 at 175.394 kb on - strand, within EX31_RS18075 at 175.397 kb on + strand, within EX31_RS18075 at 175.397 kb on + strand, within EX31_RS18075 at 175.398 kb on - strand, within EX31_RS18075 at 175.398 kb on - strand, within EX31_RS18075 at 175.398 kb on - strand, within EX31_RS18075 at 175.398 kb on - strand, within EX31_RS18075 at 175.398 kb on - strand, within EX31_RS18075 at 175.398 kb on - strand, within EX31_RS18075 at 175.398 kb on - strand, within EX31_RS18075 at 175.398 kb on - strand, within EX31_RS18075 at 175.457 kb on - strand, within EX31_RS18075 at 175.516 kb on - strand, within EX31_RS18075 at 175.518 kb on + strand, within EX31_RS18075 at 175.618 kb on + strand, within EX31_RS18075 at 175.773 kb on + strand, within EX31_RS18075 at 175.774 kb on - strand, within EX31_RS18075 at 175.774 kb on - strand, within EX31_RS18075 at 175.782 kb on + strand, within EX31_RS18075 at 175.783 kb on - strand, within EX31_RS18075 at 175.787 kb on - strand, within EX31_RS18075 at 175.795 kb on - strand, within EX31_RS18075 at 175.795 kb on - strand, within EX31_RS18075 at 175.876 kb on + strand, within EX31_RS18075 at 175.877 kb on - strand, within EX31_RS18075 at 175.922 kb on - strand, within EX31_RS18075 at 176.041 kb on + strand, within EX31_RS18075 at 176.042 kb on - strand, within EX31_RS18075 at 176.042 kb on - strand, within EX31_RS18075 at 176.042 kb on - strand, within EX31_RS18075 at 176.042 kb on - strand, within EX31_RS18075 at 176.070 kb on - strand, within EX31_RS18075 at 176.194 kb on - strand, within EX31_RS18075 at 176.251 kb on + strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.311 kb on - strand at 176.318 kb on - strand at 176.318 kb on - strand at 176.423 kb on + strand at 176.423 kb on + strand at 176.480 kb on - strand at 176.480 kb on - strand at 176.482 kb on + strand at 176.483 kb on - strand at 176.483 kb on - strand at 176.487 kb on - strand at 176.494 kb on + strand at 176.495 kb on - strand at 176.495 kb on - strand at 176.495 kb on - strand at 176.538 kb on + strand at 176.538 kb on + strand at 176.664 kb on + strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.684 kb on - strand at 176.728 kb on + strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.749 kb on - strand, within EX31_RS18080 at 176.749 kb on - strand, within EX31_RS18080 at 176.819 kb on + strand, within EX31_RS18080 at 176.820 kb on - strand, within EX31_RS18080 at 176.820 kb on - strand, within EX31_RS18080 at 176.820 kb on - strand, within EX31_RS18080 at 176.842 kb on - strand, within EX31_RS18080 at 176.842 kb on - strand, within EX31_RS18080 at 176.842 kb on - strand, within EX31_RS18080 at 176.904 kb on - strand, within EX31_RS18080 at 176.916 kb on + strand, within EX31_RS18080 at 176.916 kb on + strand, within EX31_RS18080 at 176.916 kb on + strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.921 kb on - strand, within EX31_RS18080 at 176.921 kb on - strand, within EX31_RS18080 at 176.921 kb on - strand, within EX31_RS18080 at 176.979 kb on - strand, within EX31_RS18080 at 176.979 kb on - strand, within EX31_RS18080 at 176.979 kb on - strand, within EX31_RS18080 at 177.096 kb on + strand, within EX31_RS18080 at 177.208 kb on - strand, within EX31_RS18080 at 177.208 kb on - strand, within EX31_RS18080 at 177.233 kb on - strand, within EX31_RS18080 at 177.318 kb on - strand, within EX31_RS18080 at 177.337 kb on - strand, within EX31_RS18080 at 177.338 kb on + strand, within EX31_RS18080 at 177.339 kb on - strand, within EX31_RS18080 at 177.360 kb on - strand, within EX31_RS18080 at 177.360 kb on - strand, within EX31_RS18080 at 177.360 kb on - strand, within EX31_RS18080
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 173,666 + EX31_RS18070 0.34 +1.1 173,684 - EX31_RS18070 0.35 +1.8 173,704 + EX31_RS18070 0.37 -0.3 173,706 + EX31_RS18070 0.37 +0.3 173,706 + EX31_RS18070 0.37 +0.8 173,706 + EX31_RS18070 0.37 +4.0 173,707 - EX31_RS18070 0.37 -0.8 173,707 - EX31_RS18070 0.37 +0.2 173,707 - EX31_RS18070 0.37 +1.8 173,707 - EX31_RS18070 0.37 +2.6 173,707 - EX31_RS18070 0.37 +0.2 173,707 - EX31_RS18070 0.37 +0.2 173,707 - EX31_RS18070 0.37 +0.0 173,707 - EX31_RS18070 0.37 +0.8 173,707 - EX31_RS18070 0.37 +0.3 173,707 - EX31_RS18070 0.37 +1.1 173,753 - EX31_RS18070 0.41 -0.4 173,889 - EX31_RS18070 0.51 +0.8 173,976 + EX31_RS18070 0.58 +0.8 173,976 + EX31_RS18070 0.58 -0.2 173,977 - EX31_RS18070 0.58 +0.2 173,977 - EX31_RS18070 0.58 +0.5 173,977 - EX31_RS18070 0.58 -0.2 173,977 - EX31_RS18070 0.58 +1.1 173,977 - EX31_RS18070 0.58 +0.4 174,012 + EX31_RS18070 0.61 +0.2 174,012 + EX31_RS18070 0.61 -0.8 174,067 + EX31_RS18070 0.65 +0.1 174,067 + EX31_RS18070 0.65 -0.2 174,067 + EX31_RS18070 0.65 +3.1 174,068 - EX31_RS18070 0.65 -1.2 174,068 - EX31_RS18070 0.65 -2.0 174,068 - EX31_RS18070 0.65 +0.5 174,068 - EX31_RS18070 0.65 -0.8 174,068 - EX31_RS18070 0.65 +2.2 174,068 - EX31_RS18070 0.65 -0.8 174,090 - EX31_RS18070 0.67 -1.8 174,090 - EX31_RS18070 0.67 +0.4 174,128 - EX31_RS18070 0.70 +0.5 174,151 + EX31_RS18070 0.72 +0.1 174,220 - EX31_RS18070 0.77 -1.1 174,220 - EX31_RS18070 0.77 +0.8 174,391 + -0.8 174,470 + -1.2 174,470 + +1.0 174,470 + +0.5 174,470 + +1.2 174,471 - +2.2 174,471 - +0.8 174,471 - +1.2 174,471 - -2.4 174,471 - -1.1 174,471 - +1.1 174,471 - -1.8 174,471 - +1.5 174,471 - +0.8 174,473 + +0.8 174,473 + +1.3 174,473 + -2.6 174,473 + +0.2 174,474 - -2.0 174,474 - +1.8 174,474 - +0.5 174,474 - +0.8 174,474 - +0.2 174,474 - +0.1 174,474 - +1.4 174,474 - +1.6 174,474 - -0.8 174,474 - +1.3 174,474 - -1.4 174,474 - +0.2 174,474 - +1.3 174,642 - +0.4 174,642 - +1.4 174,802 + EX31_RS18075 0.11 -1.2 174,803 - EX31_RS18075 0.11 +0.6 174,803 - EX31_RS18075 0.11 +0.8 174,803 - EX31_RS18075 0.11 +0.8 174,804 + EX31_RS18075 0.11 -0.6 174,804 + EX31_RS18075 0.11 +1.0 174,805 - EX31_RS18075 0.11 +1.1 174,805 - EX31_RS18075 0.11 -0.8 174,844 + EX31_RS18075 0.13 +0.8 174,845 - EX31_RS18075 0.13 -1.8 174,845 - EX31_RS18075 0.13 -0.6 174,845 - EX31_RS18075 0.13 -0.8 174,928 - EX31_RS18075 0.18 +0.2 174,939 + EX31_RS18075 0.18 -0.6 174,940 - EX31_RS18075 0.18 +0.2 174,940 - EX31_RS18075 0.18 -1.5 174,940 - EX31_RS18075 0.18 +0.5 174,940 - EX31_RS18075 0.18 -1.2 174,940 - EX31_RS18075 0.18 +1.5 174,940 - EX31_RS18075 0.18 -1.0 174,940 - EX31_RS18075 0.18 -0.2 174,940 - EX31_RS18075 0.18 -0.8 174,940 - EX31_RS18075 0.18 -1.2 174,940 - EX31_RS18075 0.18 -0.6 174,940 - EX31_RS18075 0.18 +0.4 174,940 - EX31_RS18075 0.18 -1.8 174,940 - EX31_RS18075 0.18 -1.5 174,940 - EX31_RS18075 0.18 +0.5 174,992 - EX31_RS18075 0.21 +0.1 175,039 - EX31_RS18075 0.24 -0.5 175,157 - EX31_RS18075 0.30 -0.8 175,227 + EX31_RS18075 0.33 +1.3 175,235 + EX31_RS18075 0.34 +0.2 175,236 - EX31_RS18075 0.34 +0.8 175,236 - EX31_RS18075 0.34 +0.8 175,289 - EX31_RS18075 0.37 -0.8 175,301 - EX31_RS18075 0.37 -0.0 175,301 - EX31_RS18075 0.37 -2.2 175,301 - EX31_RS18075 0.37 +0.5 175,355 - EX31_RS18075 0.40 +1.4 175,355 - EX31_RS18075 0.40 -0.4 175,357 + EX31_RS18075 0.40 +0.8 175,394 - EX31_RS18075 0.42 -1.5 175,397 + EX31_RS18075 0.42 -0.5 175,397 + EX31_RS18075 0.42 +1.4 175,398 - EX31_RS18075 0.42 -0.2 175,398 - EX31_RS18075 0.42 -0.4 175,398 - EX31_RS18075 0.42 -0.1 175,398 - EX31_RS18075 0.42 -0.4 175,398 - EX31_RS18075 0.42 +0.8 175,398 - EX31_RS18075 0.42 +1.0 175,398 - EX31_RS18075 0.42 +1.7 175,398 - EX31_RS18075 0.42 -1.0 175,457 - EX31_RS18075 0.46 -0.3 175,516 - EX31_RS18075 0.49 +0.7 175,518 + EX31_RS18075 0.49 -0.8 175,618 + EX31_RS18075 0.54 -0.2 175,773 + EX31_RS18075 0.62 -0.5 175,774 - EX31_RS18075 0.62 -1.2 175,774 - EX31_RS18075 0.62 +1.4 175,782 + EX31_RS18075 0.63 -0.5 175,783 - EX31_RS18075 0.63 +2.1 175,787 - EX31_RS18075 0.63 +0.2 175,795 - EX31_RS18075 0.63 +0.6 175,795 - EX31_RS18075 0.63 -1.8 175,876 + EX31_RS18075 0.68 -0.3 175,877 - EX31_RS18075 0.68 -1.1 175,922 - EX31_RS18075 0.70 -0.8 176,041 + EX31_RS18075 0.76 -0.1 176,042 - EX31_RS18075 0.76 +3.1 176,042 - EX31_RS18075 0.76 +0.3 176,042 - EX31_RS18075 0.76 +0.8 176,042 - EX31_RS18075 0.76 -2.3 176,070 - EX31_RS18075 0.78 +0.0 176,194 - EX31_RS18075 0.84 -0.4 176,251 + EX31_RS18075 0.87 +0.5 176,252 - EX31_RS18075 0.87 -1.0 176,252 - EX31_RS18075 0.87 +0.2 176,252 - EX31_RS18075 0.87 +0.1 176,252 - EX31_RS18075 0.87 +0.2 176,252 - EX31_RS18075 0.87 -0.8 176,252 - EX31_RS18075 0.87 -1.9 176,311 - -2.2 176,318 - -1.5 176,318 - +0.6 176,423 + -0.8 176,423 + -0.8 176,480 - -0.2 176,480 - -1.2 176,482 + +1.2 176,483 - -0.2 176,483 - -1.2 176,487 - +0.2 176,494 + +1.2 176,495 - -0.8 176,495 - +0.6 176,495 - +0.1 176,538 + +0.8 176,538 + +1.7 176,664 + +2.1 176,665 - -0.2 176,665 - +0.0 176,665 - +0.4 176,665 - +1.2 176,665 - +0.8 176,665 - +0.8 176,665 - -1.4 176,665 - +0.2 176,665 - -0.1 176,684 - +0.6 176,728 + EX31_RS18080 0.11 +0.8 176,729 - EX31_RS18080 0.11 +1.6 176,729 - EX31_RS18080 0.11 +0.8 176,729 - EX31_RS18080 0.11 -0.2 176,729 - EX31_RS18080 0.11 -0.8 176,729 - EX31_RS18080 0.11 -1.1 176,749 - EX31_RS18080 0.12 +0.8 176,749 - EX31_RS18080 0.12 +0.5 176,819 + EX31_RS18080 0.15 +0.2 176,820 - EX31_RS18080 0.15 +0.2 176,820 - EX31_RS18080 0.15 +1.2 176,820 - EX31_RS18080 0.15 -0.4 176,842 - EX31_RS18080 0.16 +0.2 176,842 - EX31_RS18080 0.16 +0.3 176,842 - EX31_RS18080 0.16 +0.2 176,904 - EX31_RS18080 0.19 +2.7 176,916 + EX31_RS18080 0.20 -0.2 176,916 + EX31_RS18080 0.20 -0.8 176,916 + EX31_RS18080 0.20 -0.4 176,917 - EX31_RS18080 0.20 -1.9 176,917 - EX31_RS18080 0.20 +0.8 176,917 - EX31_RS18080 0.20 +0.2 176,917 - EX31_RS18080 0.20 -2.5 176,917 - EX31_RS18080 0.20 +0.8 176,917 - EX31_RS18080 0.20 +0.1 176,917 - EX31_RS18080 0.20 -0.2 176,917 - EX31_RS18080 0.20 +0.5 176,917 - EX31_RS18080 0.20 -1.6 176,917 - EX31_RS18080 0.20 +1.1 176,921 - EX31_RS18080 0.20 +1.3 176,921 - EX31_RS18080 0.20 -0.3 176,921 - EX31_RS18080 0.20 +0.4 176,979 - EX31_RS18080 0.23 -0.8 176,979 - EX31_RS18080 0.23 +1.4 176,979 - EX31_RS18080 0.23 +1.0 177,096 + EX31_RS18080 0.28 -0.5 177,208 - EX31_RS18080 0.33 -0.4 177,208 - EX31_RS18080 0.33 +1.1 177,233 - EX31_RS18080 0.35 +0.8 177,318 - EX31_RS18080 0.39 +0.7 177,337 - EX31_RS18080 0.39 +0.1 177,338 + EX31_RS18080 0.40 -1.5 177,339 - EX31_RS18080 0.40 -1.1 177,360 - EX31_RS18080 0.41 +0.5 177,360 - EX31_RS18080 0.41 +1.0 177,360 - EX31_RS18080 0.41 +1.2
Or see this region's nucleotide sequence