Strain Fitness in Rahnella sp. WP5 around EX31_RS17835

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17830 and EX31_RS17835 are separated by 253 nucleotidesEX31_RS17835 and EX31_RS17840 are separated by 80 nucleotides EX31_RS17830: EX31_RS17830 - maltoporin, at 121,290 to 122,546 _RS17830 EX31_RS17835: EX31_RS17835 - PTS transporter subunit EIIB, at 122,800 to 123,117 _RS17835 EX31_RS17840: EX31_RS17840 - beta-galactosidase, at 123,198 to 125,267 _RS17840 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 121.841 kb on + strand, within EX31_RS17830at 121.856 kb on + strand, within EX31_RS17830at 121.860 kb on + strand, within EX31_RS17830at 121.860 kb on + strand, within EX31_RS17830at 121.860 kb on + strand, within EX31_RS17830at 122.021 kb on + strand, within EX31_RS17830at 122.022 kb on - strand, within EX31_RS17830at 122.022 kb on - strand, within EX31_RS17830at 122.022 kb on - strand, within EX31_RS17830at 122.034 kb on + strand, within EX31_RS17830at 122.111 kb on + strand, within EX31_RS17830at 122.112 kb on - strand, within EX31_RS17830at 122.112 kb on - strand, within EX31_RS17830at 122.121 kb on + strand, within EX31_RS17830at 122.122 kb on - strand, within EX31_RS17830at 122.122 kb on - strand, within EX31_RS17830at 122.122 kb on - strand, within EX31_RS17830at 122.209 kb on - strand, within EX31_RS17830at 122.280 kb on + strand, within EX31_RS17830at 122.295 kb on + strand, within EX31_RS17830at 122.296 kb on - strand, within EX31_RS17830at 122.296 kb on - strand, within EX31_RS17830at 122.296 kb on - strand, within EX31_RS17830at 122.343 kb on + strand, within EX31_RS17830at 122.344 kb on - strand, within EX31_RS17830at 122.382 kb on + strand, within EX31_RS17830at 122.382 kb on + strand, within EX31_RS17830at 122.383 kb on - strand, within EX31_RS17830at 122.384 kb on + strand, within EX31_RS17830at 122.454 kb on + strandat 122.496 kb on - strandat 122.496 kb on - strandat 122.508 kb on - strandat 122.531 kb on - strandat 122.614 kb on + strandat 122.715 kb on + strandat 122.806 kb on - strandat 122.922 kb on + strand, within EX31_RS17835at 122.944 kb on - strand, within EX31_RS17835at 122.954 kb on - strand, within EX31_RS17835at 122.976 kb on + strand, within EX31_RS17835at 123.089 kb on - strandat 123.097 kb on - strandat 123.112 kb on + strandat 123.493 kb on + strand, within EX31_RS17840at 123.493 kb on + strand, within EX31_RS17840at 123.496 kb on + strand, within EX31_RS17840at 123.563 kb on - strand, within EX31_RS17840at 123.861 kb on - strand, within EX31_RS17840at 123.861 kb on - strand, within EX31_RS17840at 123.861 kb on - strand, within EX31_RS17840at 123.862 kb on + strand, within EX31_RS17840at 123.862 kb on + strand, within EX31_RS17840at 123.862 kb on + strand, within EX31_RS17840at 123.862 kb on + strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.898 kb on - strand, within EX31_RS17840at 123.898 kb on - strand, within EX31_RS17840at 123.979 kb on + strand, within EX31_RS17840at 123.979 kb on + strand, within EX31_RS17840at 124.046 kb on + strand, within EX31_RS17840at 124.046 kb on + strand, within EX31_RS17840at 124.047 kb on - strand, within EX31_RS17840at 124.047 kb on - strand, within EX31_RS17840at 124.047 kb on - strand, within EX31_RS17840at 124.066 kb on - strand, within EX31_RS17840at 124.066 kb on - strand, within EX31_RS17840at 124.066 kb on - strand, within EX31_RS17840

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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121,841 + EX31_RS17830 0.44 -1.8
121,856 + EX31_RS17830 0.45 -1.1
121,860 + EX31_RS17830 0.45 -1.1
121,860 + EX31_RS17830 0.45 +0.3
121,860 + EX31_RS17830 0.45 -0.2
122,021 + EX31_RS17830 0.58 +1.0
122,022 - EX31_RS17830 0.58 +1.7
122,022 - EX31_RS17830 0.58 -2.0
122,022 - EX31_RS17830 0.58 -1.2
122,034 + EX31_RS17830 0.59 -0.8
122,111 + EX31_RS17830 0.65 +1.1
122,112 - EX31_RS17830 0.65 +0.1
122,112 - EX31_RS17830 0.65 -1.2
122,121 + EX31_RS17830 0.66 -0.2
122,122 - EX31_RS17830 0.66 -0.9
122,122 - EX31_RS17830 0.66 +1.4
122,122 - EX31_RS17830 0.66 -1.2
122,209 - EX31_RS17830 0.73 -0.3
122,280 + EX31_RS17830 0.79 -0.2
122,295 + EX31_RS17830 0.80 -2.4
122,296 - EX31_RS17830 0.80 +2.1
122,296 - EX31_RS17830 0.80 -0.2
122,296 - EX31_RS17830 0.80 +0.8
122,343 + EX31_RS17830 0.84 -3.3
122,344 - EX31_RS17830 0.84 +2.8
122,382 + EX31_RS17830 0.87 +1.8
122,382 + EX31_RS17830 0.87 -1.2
122,383 - EX31_RS17830 0.87 +0.5
122,384 + EX31_RS17830 0.87 +0.8
122,454 + +0.4
122,496 - +0.8
122,496 - +0.8
122,508 - +0.8
122,531 - -0.8
122,614 + +2.6
122,715 + -0.0
122,806 - +1.4
122,922 + EX31_RS17835 0.38 -0.2
122,944 - EX31_RS17835 0.45 -2.2
122,954 - EX31_RS17835 0.48 -2.0
122,976 + EX31_RS17835 0.55 +2.1
123,089 - -1.8
123,097 - +2.4
123,112 + +0.3
123,493 + EX31_RS17840 0.14 +1.8
123,493 + EX31_RS17840 0.14 +3.1
123,496 + EX31_RS17840 0.14 +0.4
123,563 - EX31_RS17840 0.18 -1.8
123,861 - EX31_RS17840 0.32 +1.4
123,861 - EX31_RS17840 0.32 +0.8
123,861 - EX31_RS17840 0.32 +0.8
123,862 + EX31_RS17840 0.32 -0.2
123,862 + EX31_RS17840 0.32 -0.1
123,862 + EX31_RS17840 0.32 +0.1
123,862 + EX31_RS17840 0.32 -0.2
123,863 - EX31_RS17840 0.32 -0.8
123,863 - EX31_RS17840 0.32 +0.6
123,863 - EX31_RS17840 0.32 -2.4
123,863 - EX31_RS17840 0.32 +0.7
123,863 - EX31_RS17840 0.32 +0.8
123,863 - EX31_RS17840 0.32 -0.2
123,863 - EX31_RS17840 0.32 +0.3
123,863 - EX31_RS17840 0.32 +0.7
123,863 - EX31_RS17840 0.32 +0.8
123,898 - EX31_RS17840 0.34 -0.7
123,898 - EX31_RS17840 0.34 +0.8
123,979 + EX31_RS17840 0.38 +1.2
123,979 + EX31_RS17840 0.38 -0.3
124,046 + EX31_RS17840 0.41 -0.5
124,046 + EX31_RS17840 0.41 +1.1
124,047 - EX31_RS17840 0.41 -0.1
124,047 - EX31_RS17840 0.41 +1.3
124,047 - EX31_RS17840 0.41 -1.0
124,066 - EX31_RS17840 0.42 +0.1
124,066 - EX31_RS17840 0.42 -2.9
124,066 - EX31_RS17840 0.42 +0.8

Or see this region's nucleotide sequence