Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13500 and EX31_RS13505 are separated by 48 nucleotides EX31_RS13505 and EX31_RS13510 are separated by 184 nucleotides EX31_RS13510 and EX31_RS13515 are separated by 159 nucleotides EX31_RS13515 and EX31_RS13520 are separated by 126 nucleotides
EX31_RS13500: EX31_RS13500 - tRNA-modifying protein YgfZ, at 133,647 to 134,639
_RS13500
EX31_RS13505: EX31_RS13505 - class IV adenylate cyclase, at 134,688 to 135,218
_RS13505
EX31_RS13510: EX31_RS13510 - 6-phosphofructokinase II, at 135,403 to 136,347
_RS13510
EX31_RS13515: EX31_RS13515 - DUF1198 domain-containing protein, at 136,507 to 136,947
_RS13515
EX31_RS13520: EX31_RS13520 - AraC family transcriptional regulator, at 137,074 to 137,961
_RS13520
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 134.637 kb on + strand at 134.638 kb on - strand at 134.638 kb on - strand at 134.638 kb on - strand at 134.638 kb on - strand at 134.649 kb on + strand at 134.649 kb on + strand at 134.649 kb on + strand at 134.649 kb on + strand at 134.649 kb on + strand at 134.649 kb on + strand at 134.650 kb on - strand at 134.650 kb on - strand at 134.650 kb on - strand at 134.682 kb on - strand at 134.683 kb on + strand at 134.683 kb on + strand at 134.683 kb on + strand at 134.684 kb on - strand at 134.731 kb on + strand at 134.731 kb on + strand at 134.732 kb on - strand at 134.732 kb on - strand at 134.732 kb on - strand at 134.732 kb on - strand at 134.778 kb on + strand, within EX31_RS13505 at 134.778 kb on + strand, within EX31_RS13505 at 134.779 kb on - strand, within EX31_RS13505 at 134.865 kb on + strand, within EX31_RS13505 at 134.866 kb on - strand, within EX31_RS13505 at 134.866 kb on - strand, within EX31_RS13505 at 134.942 kb on - strand, within EX31_RS13505 at 134.998 kb on + strand, within EX31_RS13505 at 134.998 kb on + strand, within EX31_RS13505 at 134.999 kb on - strand, within EX31_RS13505 at 134.999 kb on - strand, within EX31_RS13505 at 134.999 kb on - strand, within EX31_RS13505 at 135.166 kb on + strand at 135.167 kb on - strand at 135.186 kb on + strand at 135.186 kb on + strand at 135.187 kb on - strand at 135.230 kb on + strand at 135.230 kb on + strand at 135.230 kb on + strand at 135.249 kb on - strand at 135.251 kb on - strand at 135.251 kb on - strand at 135.251 kb on - strand at 135.278 kb on + strand at 135.278 kb on + strand at 135.278 kb on + strand at 135.278 kb on + strand at 135.278 kb on + strand at 135.278 kb on + strand at 135.278 kb on + strand at 135.279 kb on - strand at 135.279 kb on - strand at 135.279 kb on - strand at 135.279 kb on - strand at 135.279 kb on - strand at 135.279 kb on - strand at 135.279 kb on - strand at 135.279 kb on - strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.289 kb on + strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.290 kb on - strand at 135.324 kb on + strand at 135.325 kb on - strand at 135.364 kb on + strand at 135.364 kb on + strand at 135.364 kb on + strand at 135.402 kb on - strand at 135.413 kb on + strand at 135.413 kb on + strand at 135.414 kb on - strand at 135.414 kb on - strand at 135.414 kb on - strand at 135.414 kb on - strand at 135.463 kb on - strand at 135.469 kb on + strand at 135.480 kb on + strand at 135.481 kb on - strand at 135.492 kb on + strand at 135.492 kb on + strand at 135.492 kb on + strand at 135.493 kb on - strand at 135.493 kb on - strand at 135.528 kb on + strand, within EX31_RS13510 at 135.528 kb on + strand, within EX31_RS13510 at 135.528 kb on + strand, within EX31_RS13510 at 135.529 kb on - strand, within EX31_RS13510 at 135.529 kb on - strand, within EX31_RS13510 at 135.529 kb on - strand, within EX31_RS13510 at 135.529 kb on - strand, within EX31_RS13510 at 135.529 kb on - strand, within EX31_RS13510 at 135.533 kb on + strand, within EX31_RS13510 at 135.533 kb on + strand, within EX31_RS13510 at 135.550 kb on + strand, within EX31_RS13510 at 135.575 kb on + strand, within EX31_RS13510 at 135.699 kb on + strand, within EX31_RS13510 at 135.742 kb on - strand, within EX31_RS13510 at 135.742 kb on - strand, within EX31_RS13510 at 135.742 kb on - strand, within EX31_RS13510 at 135.742 kb on - strand, within EX31_RS13510 at 135.765 kb on + strand, within EX31_RS13510 at 135.840 kb on + strand, within EX31_RS13510 at 135.841 kb on - strand, within EX31_RS13510 at 135.857 kb on + strand, within EX31_RS13510 at 135.857 kb on + strand, within EX31_RS13510 at 135.858 kb on - strand, within EX31_RS13510 at 135.884 kb on + strand, within EX31_RS13510 at 135.884 kb on + strand, within EX31_RS13510 at 136.217 kb on + strand, within EX31_RS13510 at 136.217 kb on + strand, within EX31_RS13510 at 136.217 kb on + strand, within EX31_RS13510 at 136.218 kb on - strand, within EX31_RS13510 at 136.294 kb on - strand at 136.299 kb on + strand at 136.299 kb on + strand at 136.299 kb on + strand at 136.299 kb on + strand at 136.300 kb on - strand at 136.300 kb on - strand at 136.300 kb on - strand at 136.318 kb on + strand at 136.318 kb on + strand at 136.318 kb on + strand at 136.319 kb on - strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.415 kb on + strand at 136.416 kb on - strand at 136.416 kb on - strand at 136.416 kb on - strand at 136.416 kb on - strand at 136.416 kb on - strand at 136.416 kb on - strand at 136.416 kb on - strand at 136.416 kb on - strand at 136.419 kb on + strand at 136.420 kb on - strand at 136.428 kb on + strand at 136.428 kb on + strand at 136.435 kb on + strand at 136.436 kb on - strand at 136.511 kb on + strand at 136.511 kb on + strand at 136.518 kb on + strand at 136.546 kb on - strand at 136.546 kb on - strand at 136.581 kb on + strand, within EX31_RS13515 at 136.627 kb on + strand, within EX31_RS13515 at 136.627 kb on + strand, within EX31_RS13515 at 136.628 kb on - strand, within EX31_RS13515 at 136.628 kb on - strand, within EX31_RS13515 at 136.628 kb on - strand, within EX31_RS13515 at 136.700 kb on - strand, within EX31_RS13515 at 136.726 kb on + strand, within EX31_RS13515 at 136.738 kb on - strand, within EX31_RS13515 at 136.756 kb on - strand, within EX31_RS13515 at 136.826 kb on + strand, within EX31_RS13515 at 136.826 kb on + strand, within EX31_RS13515 at 136.826 kb on + strand, within EX31_RS13515 at 136.827 kb on - strand, within EX31_RS13515 at 136.859 kb on - strand, within EX31_RS13515 at 136.859 kb on - strand, within EX31_RS13515 at 136.859 kb on - strand, within EX31_RS13515 at 136.913 kb on - strand at 136.913 kb on - strand at 136.924 kb on + strand at 136.924 kb on + strand at 136.924 kb on + strand at 136.924 kb on + strand at 136.924 kb on + strand at 136.925 kb on - strand at 136.925 kb on - strand at 136.925 kb on - strand at 136.925 kb on - strand at 136.925 kb on - strand at 136.925 kb on - strand at 136.945 kb on + strand at 137.052 kb on + strand at 137.052 kb on + strand at 137.053 kb on - strand at 137.053 kb on - strand at 137.120 kb on + strand at 137.120 kb on + strand at 137.120 kb on + strand at 137.120 kb on + strand at 137.120 kb on + strand at 137.121 kb on - strand at 137.121 kb on - strand at 137.121 kb on - strand at 137.121 kb on - strand at 137.121 kb on - strand at 137.124 kb on + strand at 137.124 kb on + strand at 137.124 kb on + strand at 137.124 kb on + strand at 137.124 kb on + strand at 137.124 kb on + strand at 137.124 kb on + strand at 137.125 kb on - strand at 137.125 kb on - strand at 137.125 kb on - strand at 137.125 kb on - strand at 137.128 kb on + strand at 137.128 kb on + strand at 137.128 kb on + strand at 137.128 kb on + strand at 137.128 kb on + strand at 137.128 kb on + strand at 137.129 kb on - strand at 137.129 kb on - strand at 137.129 kb on - strand at 137.129 kb on - strand at 137.130 kb on + strand at 137.130 kb on + strand at 137.130 kb on + strand at 137.130 kb on + strand at 137.130 kb on + strand at 137.130 kb on + strand at 137.131 kb on - strand at 137.131 kb on - strand at 137.131 kb on - strand at 137.131 kb on - strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.132 kb on + strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.133 kb on - strand at 137.171 kb on + strand, within EX31_RS13520 at 137.171 kb on + strand, within EX31_RS13520 at 137.171 kb on + strand, within EX31_RS13520 at 137.171 kb on + strand, within EX31_RS13520 at 137.172 kb on - strand, within EX31_RS13520 at 137.172 kb on - strand, within EX31_RS13520 at 137.172 kb on - strand, within EX31_RS13520 at 137.248 kb on + strand, within EX31_RS13520 at 137.248 kb on + strand, within EX31_RS13520 at 137.248 kb on + strand, within EX31_RS13520 at 137.249 kb on - strand, within EX31_RS13520 at 137.249 kb on - strand, within EX31_RS13520 at 137.292 kb on - strand, within EX31_RS13520 at 137.292 kb on - strand, within EX31_RS13520
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 134,637 + +0.3 134,638 - +0.9 134,638 - -0.5 134,638 - +0.4 134,638 - -0.3 134,649 + +1.2 134,649 + +0.2 134,649 + +1.3 134,649 + -0.4 134,649 + -0.3 134,649 + +0.1 134,650 - -2.1 134,650 - -0.2 134,650 - -0.1 134,682 - -1.0 134,683 + +2.0 134,683 + -0.2 134,683 + -1.5 134,684 - +0.8 134,731 + +1.6 134,731 + +0.8 134,732 - -0.6 134,732 - -0.1 134,732 - -0.5 134,732 - +0.3 134,778 + EX31_RS13505 0.17 +1.2 134,778 + EX31_RS13505 0.17 -0.5 134,779 - EX31_RS13505 0.17 -1.3 134,865 + EX31_RS13505 0.33 +0.2 134,866 - EX31_RS13505 0.34 +1.8 134,866 - EX31_RS13505 0.34 +2.7 134,942 - EX31_RS13505 0.48 -0.3 134,998 + EX31_RS13505 0.58 +0.1 134,998 + EX31_RS13505 0.58 -0.5 134,999 - EX31_RS13505 0.59 -0.1 134,999 - EX31_RS13505 0.59 +0.9 134,999 - EX31_RS13505 0.59 +0.1 135,166 + -1.8 135,167 - -1.2 135,186 + +0.4 135,186 + -0.7 135,187 - +0.4 135,230 + -0.7 135,230 + +0.3 135,230 + +0.8 135,249 - -1.4 135,251 - -0.6 135,251 - +0.4 135,251 - -0.9 135,278 + +1.5 135,278 + +0.0 135,278 + -0.6 135,278 + +0.4 135,278 + +0.4 135,278 + +0.1 135,278 + -0.3 135,279 - +0.3 135,279 - -1.1 135,279 - -0.8 135,279 - +0.2 135,279 - +0.5 135,279 - -0.1 135,279 - +1.1 135,279 - -0.2 135,289 + -0.4 135,289 + -0.2 135,289 + +0.1 135,289 + -0.7 135,289 + -0.8 135,289 + -1.2 135,289 + +1.0 135,289 + -0.5 135,289 + +1.1 135,289 + +0.6 135,289 + -0.2 135,289 + +0.2 135,289 + -0.2 135,289 + -0.5 135,289 + -2.2 135,290 - -0.4 135,290 - +1.5 135,290 - +0.2 135,290 - +2.3 135,290 - -0.0 135,290 - -0.5 135,290 - -0.1 135,290 - +1.8 135,290 - +1.5 135,290 - +1.0 135,290 - +0.1 135,290 - +1.2 135,290 - -2.1 135,290 - +0.7 135,324 + +2.7 135,325 - -0.2 135,364 + +0.0 135,364 + +0.3 135,364 + -0.8 135,402 - +0.5 135,413 + +0.7 135,413 + -0.5 135,414 - +0.3 135,414 - +0.3 135,414 - +0.7 135,414 - -0.5 135,463 - -0.1 135,469 + +0.8 135,480 + +0.3 135,481 - +0.5 135,492 + +0.1 135,492 + +2.1 135,492 + -1.5 135,493 - +0.1 135,493 - +1.0 135,528 + EX31_RS13510 0.13 -1.7 135,528 + EX31_RS13510 0.13 -0.2 135,528 + EX31_RS13510 0.13 +0.3 135,529 - EX31_RS13510 0.13 +1.3 135,529 - EX31_RS13510 0.13 +0.8 135,529 - EX31_RS13510 0.13 -1.7 135,529 - EX31_RS13510 0.13 -1.2 135,529 - EX31_RS13510 0.13 +0.8 135,533 + EX31_RS13510 0.14 -0.5 135,533 + EX31_RS13510 0.14 -0.3 135,550 + EX31_RS13510 0.16 +1.1 135,575 + EX31_RS13510 0.18 -1.2 135,699 + EX31_RS13510 0.31 +0.9 135,742 - EX31_RS13510 0.36 +0.2 135,742 - EX31_RS13510 0.36 -0.9 135,742 - EX31_RS13510 0.36 +0.0 135,742 - EX31_RS13510 0.36 -0.1 135,765 + EX31_RS13510 0.38 +1.2 135,840 + EX31_RS13510 0.46 -0.2 135,841 - EX31_RS13510 0.46 +0.3 135,857 + EX31_RS13510 0.48 +0.1 135,857 + EX31_RS13510 0.48 -0.1 135,858 - EX31_RS13510 0.48 -0.6 135,884 + EX31_RS13510 0.51 -0.2 135,884 + EX31_RS13510 0.51 -2.2 136,217 + EX31_RS13510 0.86 -1.4 136,217 + EX31_RS13510 0.86 -1.8 136,217 + EX31_RS13510 0.86 +0.3 136,218 - EX31_RS13510 0.86 +2.3 136,294 - +0.6 136,299 + +0.1 136,299 + +0.1 136,299 + +0.4 136,299 + +0.5 136,300 - -0.5 136,300 - +0.5 136,300 - +0.8 136,318 + +0.5 136,318 + -0.1 136,318 + -1.1 136,319 - +0.4 136,415 + -1.4 136,415 + +0.7 136,415 + -0.6 136,415 + +0.4 136,415 + -0.3 136,415 + +1.5 136,415 + -1.0 136,415 + +0.2 136,415 + +0.8 136,415 + +0.3 136,415 + -0.3 136,416 - +1.2 136,416 - +0.3 136,416 - +0.5 136,416 - -2.2 136,416 - -1.3 136,416 - +1.3 136,416 - +0.7 136,416 - -0.3 136,419 + +1.3 136,420 - -1.7 136,428 + +0.9 136,428 + -0.9 136,435 + +0.1 136,436 - -0.3 136,511 + -0.6 136,511 + -0.2 136,518 + -0.0 136,546 - -0.4 136,546 - -1.2 136,581 + EX31_RS13515 0.17 +0.7 136,627 + EX31_RS13515 0.27 +1.6 136,627 + EX31_RS13515 0.27 +0.7 136,628 - EX31_RS13515 0.27 +0.1 136,628 - EX31_RS13515 0.27 -0.5 136,628 - EX31_RS13515 0.27 +1.1 136,700 - EX31_RS13515 0.44 -0.1 136,726 + EX31_RS13515 0.50 -0.4 136,738 - EX31_RS13515 0.52 +0.7 136,756 - EX31_RS13515 0.56 +0.5 136,826 + EX31_RS13515 0.72 -0.1 136,826 + EX31_RS13515 0.72 -0.1 136,826 + EX31_RS13515 0.72 -0.3 136,827 - EX31_RS13515 0.73 -1.4 136,859 - EX31_RS13515 0.80 -1.7 136,859 - EX31_RS13515 0.80 +1.1 136,859 - EX31_RS13515 0.80 -0.7 136,913 - +3.1 136,913 - +0.1 136,924 + -0.3 136,924 + +1.1 136,924 + -0.5 136,924 + +0.1 136,924 + -0.5 136,925 - +3.7 136,925 - +1.1 136,925 - -1.9 136,925 - +0.3 136,925 - +1.4 136,925 - -0.6 136,945 + +0.1 137,052 + +0.5 137,052 + +0.6 137,053 - -0.8 137,053 - -0.5 137,120 + +0.2 137,120 + +1.1 137,120 + +1.6 137,120 + +0.6 137,120 + +0.8 137,121 - -0.0 137,121 - -2.6 137,121 - -0.2 137,121 - +1.1 137,121 - +0.5 137,124 + +0.1 137,124 + -0.6 137,124 + +0.6 137,124 + +0.7 137,124 + -0.1 137,124 + +0.4 137,124 + -0.1 137,125 - +0.2 137,125 - -1.2 137,125 - +0.0 137,125 - -0.5 137,128 + -0.5 137,128 + +0.1 137,128 + -0.0 137,128 + -0.8 137,128 + +0.6 137,128 + -0.1 137,129 - +0.5 137,129 - -2.1 137,129 - -0.2 137,129 - +0.5 137,130 + +0.8 137,130 + -0.0 137,130 + +0.3 137,130 + -1.4 137,130 + +1.3 137,130 + +0.6 137,131 - -0.6 137,131 - -0.0 137,131 - -1.5 137,131 - -2.1 137,132 + -0.3 137,132 + +0.9 137,132 + -0.2 137,132 + -2.4 137,132 + -1.3 137,132 + +0.1 137,132 + +0.0 137,132 + +1.1 137,132 + -0.8 137,132 + +0.3 137,132 + -2.1 137,132 + +1.5 137,132 + -1.9 137,133 - -1.7 137,133 - -0.3 137,133 - -0.1 137,133 - +1.0 137,133 - -1.0 137,133 - -0.2 137,133 - +1.1 137,133 - +0.5 137,133 - +1.8 137,133 - +0.6 137,133 - +0.2 137,133 - -1.0 137,133 - -0.6 137,133 - +0.0 137,133 - +1.7 137,133 - +0.1 137,133 - -0.1 137,133 - +0.5 137,133 - -0.3 137,133 - -1.0 137,133 - -1.5 137,133 - +0.4 137,133 - +1.1 137,133 - +0.5 137,171 + EX31_RS13520 0.11 -1.7 137,171 + EX31_RS13520 0.11 +0.4 137,171 + EX31_RS13520 0.11 +0.6 137,171 + EX31_RS13520 0.11 +0.5 137,172 - EX31_RS13520 0.11 -3.2 137,172 - EX31_RS13520 0.11 +0.1 137,172 - EX31_RS13520 0.11 -1.0 137,248 + EX31_RS13520 0.20 +0.1 137,248 + EX31_RS13520 0.20 +0.8 137,248 + EX31_RS13520 0.20 -0.2 137,249 - EX31_RS13520 0.20 -0.1 137,249 - EX31_RS13520 0.20 -1.5 137,292 - EX31_RS13520 0.25 -0.1 137,292 - EX31_RS13520 0.25 -0.7
Or see this region's nucleotide sequence