Strain Fitness in Rahnella sp. WP5 around EX31_RS10785

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10780 and EX31_RS10785 are separated by 833 nucleotidesEX31_RS10785 and EX31_RS10790 are separated by 170 nucleotides EX31_RS10780: EX31_RS10780 - L,D-transpeptidase family protein, at 74,556 to 75,476 _RS10780 EX31_RS10785: EX31_RS10785 - alkaline phosphatase, at 76,310 to 77,740 _RS10785 EX31_RS10790: EX31_RS10790 - cation diffusion facilitator family transporter, at 77,911 to 78,822 _RS10790 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2 3at 75.329 kb on + strand, within EX31_RS10780at 75.477 kb on + strandat 75.533 kb on + strandat 75.657 kb on - strandat 75.751 kb on - strandat 75.815 kb on + strandat 75.816 kb on - strandat 75.889 kb on + strandat 75.889 kb on + strandat 75.890 kb on - strandat 75.890 kb on - strandat 76.168 kb on - strandat 76.168 kb on - strandat 76.217 kb on - strandat 76.265 kb on - strandat 76.268 kb on + strandat 76.269 kb on - strandat 76.269 kb on - strandat 76.323 kb on + strandat 76.571 kb on - strand, within EX31_RS10785at 76.574 kb on + strand, within EX31_RS10785at 76.574 kb on + strand, within EX31_RS10785at 76.654 kb on + strand, within EX31_RS10785at 76.677 kb on - strand, within EX31_RS10785at 76.677 kb on - strand, within EX31_RS10785at 76.677 kb on - strand, within EX31_RS10785at 76.723 kb on + strand, within EX31_RS10785at 76.730 kb on + strand, within EX31_RS10785at 76.730 kb on + strand, within EX31_RS10785at 76.731 kb on - strand, within EX31_RS10785at 76.731 kb on - strand, within EX31_RS10785at 76.755 kb on + strand, within EX31_RS10785at 76.755 kb on + strand, within EX31_RS10785at 76.756 kb on - strand, within EX31_RS10785at 77.044 kb on + strand, within EX31_RS10785at 77.050 kb on + strand, within EX31_RS10785at 77.084 kb on + strand, within EX31_RS10785at 77.084 kb on + strand, within EX31_RS10785at 77.208 kb on - strand, within EX31_RS10785at 77.703 kb on - strandat 77.703 kb on - strandat 77.729 kb on - strandat 77.805 kb on - strandat 77.814 kb on + strandat 77.814 kb on + strandat 77.853 kb on - strandat 77.853 kb on - strandat 77.912 kb on + strandat 77.921 kb on - strandat 77.986 kb on - strandat 78.083 kb on - strand, within EX31_RS10790at 78.083 kb on - strand, within EX31_RS10790at 78.119 kb on - strand, within EX31_RS10790at 78.119 kb on - strand, within EX31_RS10790at 78.119 kb on - strand, within EX31_RS10790at 78.119 kb on - strand, within EX31_RS10790at 78.142 kb on + strand, within EX31_RS10790at 78.142 kb on + strand, within EX31_RS10790at 78.142 kb on + strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.245 kb on + strand, within EX31_RS10790at 78.245 kb on + strand, within EX31_RS10790at 78.245 kb on + strand, within EX31_RS10790at 78.246 kb on - strand, within EX31_RS10790at 78.246 kb on - strand, within EX31_RS10790at 78.246 kb on - strand, within EX31_RS10790at 78.246 kb on - strand, within EX31_RS10790at 78.297 kb on - strand, within EX31_RS10790at 78.330 kb on + strand, within EX31_RS10790at 78.353 kb on + strand, within EX31_RS10790at 78.353 kb on + strand, within EX31_RS10790at 78.354 kb on - strand, within EX31_RS10790at 78.404 kb on + strand, within EX31_RS10790at 78.404 kb on + strand, within EX31_RS10790at 78.405 kb on - strand, within EX31_RS10790at 78.405 kb on - strand, within EX31_RS10790at 78.405 kb on - strand, within EX31_RS10790at 78.405 kb on - strand, within EX31_RS10790at 78.463 kb on - strand, within EX31_RS10790at 78.559 kb on + strand, within EX31_RS10790at 78.665 kb on - strand, within EX31_RS10790at 78.665 kb on - strand, within EX31_RS10790at 78.665 kb on - strand, within EX31_RS10790at 78.665 kb on - strand, within EX31_RS10790

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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75,329 + EX31_RS10780 0.84 +0.8
75,477 + -1.0
75,533 + +1.4
75,657 - +0.8
75,751 - +2.4
75,815 + +0.8
75,816 - -0.2
75,889 + +0.0
75,889 + +1.0
75,890 - +1.2
75,890 - -1.5
76,168 - -0.5
76,168 - -1.2
76,217 - -0.9
76,265 - +0.2
76,268 + +0.3
76,269 - -0.5
76,269 - +0.1
76,323 + +2.6
76,571 - EX31_RS10785 0.18 -0.2
76,574 + EX31_RS10785 0.18 +1.1
76,574 + EX31_RS10785 0.18 +0.8
76,654 + EX31_RS10785 0.24 -1.2
76,677 - EX31_RS10785 0.26 -0.8
76,677 - EX31_RS10785 0.26 -0.8
76,677 - EX31_RS10785 0.26 +0.8
76,723 + EX31_RS10785 0.29 -2.0
76,730 + EX31_RS10785 0.29 -0.6
76,730 + EX31_RS10785 0.29 +0.4
76,731 - EX31_RS10785 0.29 +2.9
76,731 - EX31_RS10785 0.29 +0.6
76,755 + EX31_RS10785 0.31 -0.3
76,755 + EX31_RS10785 0.31 +1.8
76,756 - EX31_RS10785 0.31 +1.4
77,044 + EX31_RS10785 0.51 +1.5
77,050 + EX31_RS10785 0.52 +0.8
77,084 + EX31_RS10785 0.54 -1.1
77,084 + EX31_RS10785 0.54 +1.4
77,208 - EX31_RS10785 0.63 +0.7
77,703 - -0.6
77,703 - +0.2
77,729 - +1.5
77,805 - +0.8
77,814 + +0.8
77,814 + -2.2
77,853 - +0.7
77,853 - +1.5
77,912 + +1.4
77,921 - -0.8
77,986 - +1.8
78,083 - EX31_RS10790 0.19 +1.4
78,083 - EX31_RS10790 0.19 -0.6
78,119 - EX31_RS10790 0.23 -0.2
78,119 - EX31_RS10790 0.23 +0.8
78,119 - EX31_RS10790 0.23 +1.0
78,119 - EX31_RS10790 0.23 -1.8
78,142 + EX31_RS10790 0.25 -0.2
78,142 + EX31_RS10790 0.25 -0.8
78,142 + EX31_RS10790 0.25 +0.2
78,143 - EX31_RS10790 0.25 +1.8
78,143 - EX31_RS10790 0.25 -0.8
78,143 - EX31_RS10790 0.25 +0.4
78,143 - EX31_RS10790 0.25 -0.8
78,143 - EX31_RS10790 0.25 -0.9
78,143 - EX31_RS10790 0.25 +1.8
78,143 - EX31_RS10790 0.25 -2.2
78,143 - EX31_RS10790 0.25 -2.2
78,143 - EX31_RS10790 0.25 +1.1
78,143 - EX31_RS10790 0.25 -2.2
78,244 - EX31_RS10790 0.37 -1.5
78,244 - EX31_RS10790 0.37 -0.3
78,244 - EX31_RS10790 0.37 -1.2
78,244 - EX31_RS10790 0.37 +0.2
78,244 - EX31_RS10790 0.37 +0.8
78,244 - EX31_RS10790 0.37 -0.2
78,244 - EX31_RS10790 0.37 +0.6
78,245 + EX31_RS10790 0.37 -0.8
78,245 + EX31_RS10790 0.37 +0.8
78,245 + EX31_RS10790 0.37 -1.4
78,246 - EX31_RS10790 0.37 -1.6
78,246 - EX31_RS10790 0.37 +1.5
78,246 - EX31_RS10790 0.37 -1.2
78,246 - EX31_RS10790 0.37 +0.1
78,297 - EX31_RS10790 0.42 +2.8
78,330 + EX31_RS10790 0.46 -0.2
78,353 + EX31_RS10790 0.48 -0.5
78,353 + EX31_RS10790 0.48 -0.2
78,354 - EX31_RS10790 0.49 -0.0
78,404 + EX31_RS10790 0.54 +0.6
78,404 + EX31_RS10790 0.54 +0.3
78,405 - EX31_RS10790 0.54 +1.5
78,405 - EX31_RS10790 0.54 -2.2
78,405 - EX31_RS10790 0.54 +0.5
78,405 - EX31_RS10790 0.54 -0.2
78,463 - EX31_RS10790 0.61 -0.4
78,559 + EX31_RS10790 0.71 +1.8
78,665 - EX31_RS10790 0.83 -1.2
78,665 - EX31_RS10790 0.83 +0.8
78,665 - EX31_RS10790 0.83 +0.8
78,665 - EX31_RS10790 0.83 +0.8

Or see this region's nucleotide sequence