Strain Fitness in Rahnella sp. WP5 around EX31_RS09975

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09970 and EX31_RS09975 are separated by 44 nucleotidesEX31_RS09975 and EX31_RS09980 overlap by 1 nucleotides EX31_RS09970: EX31_RS09970 - bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF, at 203,155 to 204,519 _RS09970 EX31_RS09975: EX31_RS09975 - tryptophan synthase subunit beta, at 204,564 to 205,754 _RS09975 EX31_RS09980: EX31_RS09980 - tryptophan synthase subunit alpha, at 205,754 to 206,560 _RS09980 Position (kb) 204 205 206Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 203.596 kb on + strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.597 kb on - strand, within EX31_RS09970at 203.628 kb on + strand, within EX31_RS09970at 203.811 kb on + strand, within EX31_RS09970at 203.811 kb on + strand, within EX31_RS09970at 203.811 kb on + strand, within EX31_RS09970at 203.811 kb on + strand, within EX31_RS09970at 203.812 kb on - strand, within EX31_RS09970at 203.814 kb on + strand, within EX31_RS09970at 203.814 kb on + strand, within EX31_RS09970at 203.814 kb on + strand, within EX31_RS09970at 203.814 kb on + strand, within EX31_RS09970at 203.815 kb on - strand, within EX31_RS09970at 204.079 kb on + strand, within EX31_RS09970at 204.079 kb on + strand, within EX31_RS09970at 204.079 kb on + strand, within EX31_RS09970at 204.079 kb on + strand, within EX31_RS09970at 204.080 kb on - strand, within EX31_RS09970at 204.080 kb on - strand, within EX31_RS09970at 204.080 kb on - strand, within EX31_RS09970at 204.080 kb on - strand, within EX31_RS09970at 204.137 kb on + strand, within EX31_RS09970at 204.137 kb on + strand, within EX31_RS09970at 204.181 kb on + strand, within EX31_RS09970at 204.181 kb on + strand, within EX31_RS09970at 204.181 kb on + strand, within EX31_RS09970at 204.364 kb on - strand, within EX31_RS09970at 204.393 kb on + strandat 204.393 kb on + strandat 204.495 kb on - strandat 204.517 kb on + strandat 204.517 kb on + strandat 204.571 kb on + strandat 204.583 kb on - strandat 204.606 kb on + strandat 204.606 kb on + strandat 204.606 kb on + strandat 204.606 kb on + strandat 204.607 kb on - strandat 204.703 kb on + strand, within EX31_RS09975at 204.714 kb on + strand, within EX31_RS09975at 204.746 kb on + strand, within EX31_RS09975at 204.780 kb on + strand, within EX31_RS09975at 204.780 kb on + strand, within EX31_RS09975at 204.780 kb on + strand, within EX31_RS09975at 204.781 kb on - strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 205.040 kb on + strand, within EX31_RS09975at 205.040 kb on + strand, within EX31_RS09975at 205.070 kb on + strand, within EX31_RS09975at 205.101 kb on + strand, within EX31_RS09975at 205.116 kb on + strand, within EX31_RS09975at 205.116 kb on + strand, within EX31_RS09975at 205.179 kb on - strand, within EX31_RS09975at 205.179 kb on - strand, within EX31_RS09975at 205.277 kb on + strand, within EX31_RS09975at 205.391 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.396 kb on - strand, within EX31_RS09975at 205.530 kb on + strand, within EX31_RS09975at 205.530 kb on + strand, within EX31_RS09975at 205.531 kb on - strand, within EX31_RS09975at 205.753 kb on - strandat 205.763 kb on + strandat 205.773 kb on + strandat 205.774 kb on - strandat 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.058 kb on - strand, within EX31_RS09980at 206.058 kb on - strand, within EX31_RS09980at 206.096 kb on + strand, within EX31_RS09980at 206.096 kb on + strand, within EX31_RS09980at 206.097 kb on - strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.270 kb on + strand, within EX31_RS09980at 206.276 kb on + strand, within EX31_RS09980at 206.276 kb on + strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.347 kb on + strand, within EX31_RS09980at 206.353 kb on - strand, within EX31_RS09980at 206.360 kb on + strand, within EX31_RS09980at 206.361 kb on - strand, within EX31_RS09980at 206.446 kb on + strand, within EX31_RS09980at 206.446 kb on + strand, within EX31_RS09980at 206.470 kb on + strand, within EX31_RS09980at 206.470 kb on + strand, within EX31_RS09980at 206.558 kb on + strandat 206.647 kb on + strandat 206.648 kb on - strandat 206.650 kb on + strandat 206.662 kb on + strandat 206.696 kb on + strandat 206.696 kb on + strandat 206.696 kb on + strandat 206.697 kb on - strandat 206.697 kb on - strandat 206.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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203,596 + EX31_RS09970 0.32 -1.9
203,596 + EX31_RS09970 0.32 -2.3
203,596 + EX31_RS09970 0.32 -2.1
203,596 + EX31_RS09970 0.32 -3.3
203,596 + EX31_RS09970 0.32 -2.9
203,597 - EX31_RS09970 0.32 -2.9
203,628 + EX31_RS09970 0.35 -3.9
203,811 + EX31_RS09970 0.48 -1.3
203,811 + EX31_RS09970 0.48 -2.9
203,811 + EX31_RS09970 0.48 -3.2
203,811 + EX31_RS09970 0.48 -1.6
203,812 - EX31_RS09970 0.48 -0.9
203,814 + EX31_RS09970 0.48 -2.3
203,814 + EX31_RS09970 0.48 -2.6
203,814 + EX31_RS09970 0.48 -2.7
203,814 + EX31_RS09970 0.48 -0.3
203,815 - EX31_RS09970 0.48 -1.6
204,079 + EX31_RS09970 0.68 -2.8
204,079 + EX31_RS09970 0.68 -0.6
204,079 + EX31_RS09970 0.68 -2.6
204,079 + EX31_RS09970 0.68 -0.9
204,080 - EX31_RS09970 0.68 -0.9
204,080 - EX31_RS09970 0.68 -1.3
204,080 - EX31_RS09970 0.68 -2.6
204,080 - EX31_RS09970 0.68 -1.3
204,137 + EX31_RS09970 0.72 -2.3
204,137 + EX31_RS09970 0.72 -1.6
204,181 + EX31_RS09970 0.75 -2.6
204,181 + EX31_RS09970 0.75 -2.7
204,181 + EX31_RS09970 0.75 -1.6
204,364 - EX31_RS09970 0.89 -2.6
204,393 + -0.6
204,393 + -3.3
204,495 - -0.9
204,517 + -0.3
204,517 + -0.1
204,571 + -0.3
204,583 - -3.2
204,606 + -2.1
204,606 + -1.6
204,606 + -2.7
204,606 + -1.6
204,607 - -2.3
204,703 + EX31_RS09975 0.12 -1.6
204,714 + EX31_RS09975 0.13 -3.0
204,746 + EX31_RS09975 0.15 -2.6
204,780 + EX31_RS09975 0.18 -1.3
204,780 + EX31_RS09975 0.18 -1.6
204,780 + EX31_RS09975 0.18 -2.1
204,781 - EX31_RS09975 0.18 +0.7
204,957 + EX31_RS09975 0.33 -2.7
204,957 + EX31_RS09975 0.33 -4.9
204,957 + EX31_RS09975 0.33 -0.9
204,957 + EX31_RS09975 0.33 -0.3
204,957 + EX31_RS09975 0.33 -2.1
204,957 + EX31_RS09975 0.33 -2.4
204,957 + EX31_RS09975 0.33 -2.4
204,958 - EX31_RS09975 0.33 -2.1
204,958 - EX31_RS09975 0.33 -1.3
204,958 - EX31_RS09975 0.33 -0.9
205,040 + EX31_RS09975 0.40 -1.9
205,040 + EX31_RS09975 0.40 -2.4
205,070 + EX31_RS09975 0.42 -2.6
205,101 + EX31_RS09975 0.45 -3.2
205,116 + EX31_RS09975 0.46 -0.3
205,116 + EX31_RS09975 0.46 -1.6
205,179 - EX31_RS09975 0.52 -1.3
205,179 - EX31_RS09975 0.52 -0.3
205,277 + EX31_RS09975 0.60 +0.7
205,391 + EX31_RS09975 0.69 -1.9
205,395 + EX31_RS09975 0.70 -0.3
205,395 + EX31_RS09975 0.70 -2.1
205,395 + EX31_RS09975 0.70 -3.0
205,396 - EX31_RS09975 0.70 -1.9
205,530 + EX31_RS09975 0.81 -3.8
205,530 + EX31_RS09975 0.81 -2.1
205,531 - EX31_RS09975 0.81 -3.0
205,753 - -1.6
205,763 + -2.3
205,773 + -1.9
205,774 - -0.3
206,057 + EX31_RS09980 0.38 -2.6
206,057 + EX31_RS09980 0.38 -2.7
206,057 + EX31_RS09980 0.38 -0.3
206,057 + EX31_RS09980 0.38 -2.9
206,058 - EX31_RS09980 0.38 -3.0
206,058 - EX31_RS09980 0.38 -2.1
206,096 + EX31_RS09980 0.42 -0.3
206,096 + EX31_RS09980 0.42 -1.3
206,097 - EX31_RS09980 0.43 -2.3
206,203 + EX31_RS09980 0.56 -3.2
206,203 + EX31_RS09980 0.56 -0.3
206,203 + EX31_RS09980 0.56 -1.3
206,270 + EX31_RS09980 0.64 -3.4
206,276 + EX31_RS09980 0.65 -3.1
206,276 + EX31_RS09980 0.65 -1.6
206,277 - EX31_RS09980 0.65 -1.9
206,277 - EX31_RS09980 0.65 -0.9
206,277 - EX31_RS09980 0.65 -1.3
206,277 - EX31_RS09980 0.65 -1.1
206,347 + EX31_RS09980 0.73 -1.3
206,353 - EX31_RS09980 0.74 -2.9
206,360 + EX31_RS09980 0.75 -1.6
206,361 - EX31_RS09980 0.75 -2.1
206,446 + EX31_RS09980 0.86 -2.1
206,446 + EX31_RS09980 0.86 -2.6
206,470 + EX31_RS09980 0.89 -1.3
206,470 + EX31_RS09980 0.89 -1.3
206,558 + +0.4
206,647 + +1.3
206,648 - -0.1
206,650 + -0.3
206,662 + -1.6
206,696 + -2.4
206,696 + +0.7
206,696 + +0.7
206,697 - +0.4
206,697 - -1.1
206,728 - -0.3

Or see this region's nucleotide sequence