Strain Fitness in Rahnella sp. WP5 around EX31_RS07520

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07515 and EX31_RS07520 are separated by 1 nucleotidesEX31_RS07520 and EX31_RS07525 overlap by 8 nucleotidesEX31_RS07525 and EX31_RS07530 overlap by 8 nucleotides EX31_RS07515: EX31_RS07515 - D-cysteine desulfhydrase family protein, at 317,896 to 318,894 _RS07515 EX31_RS07520: EX31_RS07520 - ornithine cyclodeaminase, at 318,896 to 319,894 _RS07520 EX31_RS07525: EX31_RS07525 - sulfurtransferase, at 319,887 to 320,756 _RS07525 EX31_RS07530: EX31_RS07530 - ABC transporter ATP-binding protein, at 320,749 to 322,377 _RS07530 Position (kb) 318 319 320Strain fitness (log2 ratio) -2 -1 0 1 2at 318.013 kb on + strand, within EX31_RS07515at 318.014 kb on - strand, within EX31_RS07515at 318.014 kb on - strand, within EX31_RS07515at 318.014 kb on - strand, within EX31_RS07515at 318.014 kb on - strand, within EX31_RS07515at 318.058 kb on + strand, within EX31_RS07515at 318.059 kb on - strand, within EX31_RS07515at 318.157 kb on - strand, within EX31_RS07515at 318.208 kb on + strand, within EX31_RS07515at 318.388 kb on + strand, within EX31_RS07515at 318.389 kb on - strand, within EX31_RS07515at 318.389 kb on - strand, within EX31_RS07515at 318.424 kb on - strand, within EX31_RS07515at 318.497 kb on - strand, within EX31_RS07515at 318.511 kb on - strand, within EX31_RS07515at 318.511 kb on - strand, within EX31_RS07515at 318.511 kb on - strand, within EX31_RS07515at 318.511 kb on - strand, within EX31_RS07515at 318.514 kb on + strand, within EX31_RS07515at 318.514 kb on + strand, within EX31_RS07515at 318.514 kb on + strand, within EX31_RS07515at 318.758 kb on - strand, within EX31_RS07515at 319.769 kb on + strand, within EX31_RS07520at 319.770 kb on - strand, within EX31_RS07520at 319.770 kb on - strand, within EX31_RS07520at 319.770 kb on - strand, within EX31_RS07520at 319.770 kb on - strand, within EX31_RS07520at 319.883 kb on + strandat 319.884 kb on - strandat 319.926 kb on - strandat 320.053 kb on - strand, within EX31_RS07525at 320.053 kb on - strand, within EX31_RS07525at 320.053 kb on - strand, within EX31_RS07525at 320.058 kb on - strand, within EX31_RS07525at 320.309 kb on - strand, within EX31_RS07525at 320.309 kb on - strand, within EX31_RS07525at 320.613 kb on - strand, within EX31_RS07525at 320.691 kb on + strandat 320.692 kb on - strandat 320.692 kb on - strandat 320.692 kb on - strandat 320.692 kb on - strandat 320.750 kb on + strandat 320.804 kb on - strandat 320.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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318,013 + EX31_RS07515 0.12 -0.6
318,014 - EX31_RS07515 0.12 +0.4
318,014 - EX31_RS07515 0.12 -0.1
318,014 - EX31_RS07515 0.12 -0.1
318,014 - EX31_RS07515 0.12 -0.9
318,058 + EX31_RS07515 0.16 -0.9
318,059 - EX31_RS07515 0.16 -0.7
318,157 - EX31_RS07515 0.26 -0.9
318,208 + EX31_RS07515 0.31 -0.4
318,388 + EX31_RS07515 0.49 -0.3
318,389 - EX31_RS07515 0.49 -0.0
318,389 - EX31_RS07515 0.49 -0.9
318,424 - EX31_RS07515 0.53 +0.7
318,497 - EX31_RS07515 0.60 -1.6
318,511 - EX31_RS07515 0.62 +1.0
318,511 - EX31_RS07515 0.62 +0.4
318,511 - EX31_RS07515 0.62 -0.7
318,511 - EX31_RS07515 0.62 +0.4
318,514 + EX31_RS07515 0.62 -0.3
318,514 + EX31_RS07515 0.62 -0.8
318,514 + EX31_RS07515 0.62 +0.7
318,758 - EX31_RS07515 0.86 -1.9
319,769 + EX31_RS07520 0.87 -1.3
319,770 - EX31_RS07520 0.87 -1.1
319,770 - EX31_RS07520 0.87 -1.9
319,770 - EX31_RS07520 0.87 -1.1
319,770 - EX31_RS07520 0.87 -0.3
319,883 + +0.7
319,884 - +0.4
319,926 - -0.1
320,053 - EX31_RS07525 0.19 +0.1
320,053 - EX31_RS07525 0.19 +2.0
320,053 - EX31_RS07525 0.19 -0.3
320,058 - EX31_RS07525 0.20 +0.6
320,309 - EX31_RS07525 0.49 -1.6
320,309 - EX31_RS07525 0.49 -1.1
320,613 - EX31_RS07525 0.83 +2.3
320,691 + -1.3
320,692 - +0.5
320,692 - -2.4
320,692 - +2.0
320,692 - -1.9
320,750 + +2.3
320,804 - +1.0
320,880 - -0.5

Or see this region's nucleotide sequence