Strain Fitness in Rahnella sp. WP5 around EX31_RS07170

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07165 and EX31_RS07170 are separated by 212 nucleotidesEX31_RS07170 and EX31_RS07175 are separated by 46 nucleotides EX31_RS07165: EX31_RS07165 - 2-hydroxyacid dehydrogenase, at 228,500 to 229,444 _RS07165 EX31_RS07170: EX31_RS07170 - glycogen debranching protein GlgX, at 229,657 to 231,939 _RS07170 EX31_RS07175: EX31_RS07175 - FAD:protein FMN transferase ApbE, at 231,986 to 233,026 _RS07175 Position (kb) 229 230 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 228.760 kb on + strand, within EX31_RS07165at 228.796 kb on + strand, within EX31_RS07165at 228.944 kb on - strand, within EX31_RS07165at 229.033 kb on + strand, within EX31_RS07165at 229.067 kb on + strand, within EX31_RS07165at 229.067 kb on + strand, within EX31_RS07165at 229.068 kb on - strand, within EX31_RS07165at 229.123 kb on + strand, within EX31_RS07165at 229.124 kb on - strand, within EX31_RS07165at 229.124 kb on - strand, within EX31_RS07165at 229.144 kb on + strand, within EX31_RS07165at 229.145 kb on - strand, within EX31_RS07165at 229.174 kb on + strand, within EX31_RS07165at 229.204 kb on + strand, within EX31_RS07165at 229.205 kb on - strand, within EX31_RS07165at 229.205 kb on - strand, within EX31_RS07165at 229.205 kb on - strand, within EX31_RS07165at 229.275 kb on - strand, within EX31_RS07165at 229.295 kb on + strand, within EX31_RS07165at 229.372 kb on + strandat 229.372 kb on + strandat 229.372 kb on + strandat 229.373 kb on - strandat 229.474 kb on - strandat 229.477 kb on + strandat 229.477 kb on + strandat 229.478 kb on - strandat 229.557 kb on - strandat 229.743 kb on + strandat 229.751 kb on + strandat 229.751 kb on + strandat 229.770 kb on + strandat 229.771 kb on - strandat 229.922 kb on + strand, within EX31_RS07170at 229.922 kb on + strand, within EX31_RS07170at 229.922 kb on + strand, within EX31_RS07170at 229.923 kb on - strand, within EX31_RS07170at 229.923 kb on - strand, within EX31_RS07170at 229.957 kb on + strand, within EX31_RS07170at 229.957 kb on + strand, within EX31_RS07170at 229.958 kb on - strand, within EX31_RS07170at 229.958 kb on - strand, within EX31_RS07170at 229.958 kb on - strand, within EX31_RS07170at 229.983 kb on + strand, within EX31_RS07170at 229.984 kb on - strand, within EX31_RS07170at 230.005 kb on + strand, within EX31_RS07170at 230.035 kb on + strand, within EX31_RS07170at 230.035 kb on + strand, within EX31_RS07170at 230.035 kb on + strand, within EX31_RS07170at 230.035 kb on + strand, within EX31_RS07170at 230.036 kb on - strand, within EX31_RS07170at 230.165 kb on - strand, within EX31_RS07170at 230.283 kb on + strand, within EX31_RS07170at 230.332 kb on - strand, within EX31_RS07170at 230.408 kb on - strand, within EX31_RS07170at 230.408 kb on - strand, within EX31_RS07170at 230.408 kb on - strand, within EX31_RS07170at 230.408 kb on - strand, within EX31_RS07170at 230.485 kb on - strand, within EX31_RS07170at 230.509 kb on + strand, within EX31_RS07170at 230.545 kb on + strand, within EX31_RS07170at 230.545 kb on + strand, within EX31_RS07170at 230.546 kb on - strand, within EX31_RS07170at 230.546 kb on - strand, within EX31_RS07170at 230.546 kb on - strand, within EX31_RS07170at 230.546 kb on - strand, within EX31_RS07170at 230.547 kb on + strand, within EX31_RS07170at 230.548 kb on - strand, within EX31_RS07170at 230.679 kb on + strand, within EX31_RS07170at 230.680 kb on - strand, within EX31_RS07170at 230.701 kb on + strand, within EX31_RS07170at 230.701 kb on + strand, within EX31_RS07170at 230.701 kb on + strand, within EX31_RS07170at 230.702 kb on - strand, within EX31_RS07170at 230.725 kb on - strand, within EX31_RS07170at 230.734 kb on + strand, within EX31_RS07170at 230.734 kb on + strand, within EX31_RS07170at 230.734 kb on + strand, within EX31_RS07170at 230.735 kb on - strand, within EX31_RS07170at 230.735 kb on - strand, within EX31_RS07170at 230.761 kb on - strand, within EX31_RS07170at 230.789 kb on + strand, within EX31_RS07170at 230.789 kb on + strand, within EX31_RS07170at 230.816 kb on - strand, within EX31_RS07170at 230.884 kb on + strand, within EX31_RS07170at 230.884 kb on + strand, within EX31_RS07170at 230.885 kb on - strand, within EX31_RS07170at 230.885 kb on - strand, within EX31_RS07170at 231.148 kb on + strand, within EX31_RS07170at 231.208 kb on + strand, within EX31_RS07170at 231.208 kb on + strand, within EX31_RS07170at 231.280 kb on + strand, within EX31_RS07170at 231.280 kb on + strand, within EX31_RS07170at 231.281 kb on - strand, within EX31_RS07170at 231.342 kb on + strand, within EX31_RS07170at 231.345 kb on + strand, within EX31_RS07170at 231.345 kb on + strand, within EX31_RS07170at 231.427 kb on - strand, within EX31_RS07170at 231.437 kb on - strand, within EX31_RS07170at 231.819 kb on + strandat 232.005 kb on + strandat 232.006 kb on - strandat 232.029 kb on + strandat 232.030 kb on - strandat 232.066 kb on - strandat 232.223 kb on - strand, within EX31_RS07175at 232.223 kb on - strand, within EX31_RS07175at 232.223 kb on - strand, within EX31_RS07175at 232.255 kb on - strand, within EX31_RS07175at 232.255 kb on - strand, within EX31_RS07175at 232.255 kb on - strand, within EX31_RS07175at 232.262 kb on - strand, within EX31_RS07175at 232.266 kb on + strand, within EX31_RS07175at 232.420 kb on - strand, within EX31_RS07175at 232.420 kb on - strand, within EX31_RS07175at 232.443 kb on - strand, within EX31_RS07175at 232.443 kb on - strand, within EX31_RS07175at 232.471 kb on - strand, within EX31_RS07175at 232.491 kb on - strand, within EX31_RS07175at 232.500 kb on + strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.556 kb on - strand, within EX31_RS07175at 232.566 kb on - strand, within EX31_RS07175at 232.669 kb on + strand, within EX31_RS07175at 232.669 kb on + strand, within EX31_RS07175at 232.670 kb on - strand, within EX31_RS07175at 232.768 kb on - strand, within EX31_RS07175at 232.768 kb on - strand, within EX31_RS07175at 232.803 kb on + strand, within EX31_RS07175at 232.804 kb on - strand, within EX31_RS07175at 232.804 kb on - strand, within EX31_RS07175at 232.832 kb on - strand, within EX31_RS07175at 232.903 kb on - strand, within EX31_RS07175

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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228,760 + EX31_RS07165 0.28 -0.3
228,796 + EX31_RS07165 0.31 -0.7
228,944 - EX31_RS07165 0.47 +0.7
229,033 + EX31_RS07165 0.56 -1.3
229,067 + EX31_RS07165 0.60 -0.3
229,067 + EX31_RS07165 0.60 +1.1
229,068 - EX31_RS07165 0.60 +0.6
229,123 + EX31_RS07165 0.66 -1.1
229,124 - EX31_RS07165 0.66 +0.9
229,124 - EX31_RS07165 0.66 -0.3
229,144 + EX31_RS07165 0.68 +1.3
229,145 - EX31_RS07165 0.68 +0.6
229,174 + EX31_RS07165 0.71 +0.1
229,204 + EX31_RS07165 0.74 +2.3
229,205 - EX31_RS07165 0.75 -0.9
229,205 - EX31_RS07165 0.75 -0.1
229,205 - EX31_RS07165 0.75 +1.1
229,275 - EX31_RS07165 0.82 +0.7
229,295 + EX31_RS07165 0.84 -0.9
229,372 + +0.7
229,372 + +0.5
229,372 + +1.5
229,373 - -2.6
229,474 - -1.4
229,477 + +0.7
229,477 + -0.9
229,478 - -0.6
229,557 - +0.7
229,743 + -1.7
229,751 + -1.4
229,751 + -0.5
229,770 + +0.5
229,771 - +2.7
229,922 + EX31_RS07170 0.12 -0.3
229,922 + EX31_RS07170 0.12 +0.7
229,922 + EX31_RS07170 0.12 -0.1
229,923 - EX31_RS07170 0.12 -1.6
229,923 - EX31_RS07170 0.12 +1.1
229,957 + EX31_RS07170 0.13 -1.1
229,957 + EX31_RS07170 0.13 +0.5
229,958 - EX31_RS07170 0.13 +0.7
229,958 - EX31_RS07170 0.13 +1.3
229,958 - EX31_RS07170 0.13 +2.5
229,983 + EX31_RS07170 0.14 -1.3
229,984 - EX31_RS07170 0.14 -0.9
230,005 + EX31_RS07170 0.15 -0.6
230,035 + EX31_RS07170 0.17 -0.3
230,035 + EX31_RS07170 0.17 +1.1
230,035 + EX31_RS07170 0.17 +2.3
230,035 + EX31_RS07170 0.17 +0.7
230,036 - EX31_RS07170 0.17 -0.3
230,165 - EX31_RS07170 0.22 -0.6
230,283 + EX31_RS07170 0.27 +0.7
230,332 - EX31_RS07170 0.30 -1.5
230,408 - EX31_RS07170 0.33 +1.7
230,408 - EX31_RS07170 0.33 +1.0
230,408 - EX31_RS07170 0.33 -1.3
230,408 - EX31_RS07170 0.33 -0.6
230,485 - EX31_RS07170 0.36 +1.7
230,509 + EX31_RS07170 0.37 +3.3
230,545 + EX31_RS07170 0.39 -0.3
230,545 + EX31_RS07170 0.39 -0.3
230,546 - EX31_RS07170 0.39 +2.5
230,546 - EX31_RS07170 0.39 -1.3
230,546 - EX31_RS07170 0.39 -0.1
230,546 - EX31_RS07170 0.39 +1.5
230,547 + EX31_RS07170 0.39 -1.6
230,548 - EX31_RS07170 0.39 -1.9
230,679 + EX31_RS07170 0.45 +1.5
230,680 - EX31_RS07170 0.45 -0.3
230,701 + EX31_RS07170 0.46 -0.6
230,701 + EX31_RS07170 0.46 +2.3
230,701 + EX31_RS07170 0.46 +1.0
230,702 - EX31_RS07170 0.46 +1.7
230,725 - EX31_RS07170 0.47 -0.5
230,734 + EX31_RS07170 0.47 -0.0
230,734 + EX31_RS07170 0.47 -0.3
230,734 + EX31_RS07170 0.47 -0.5
230,735 - EX31_RS07170 0.47 -0.3
230,735 - EX31_RS07170 0.47 -0.3
230,761 - EX31_RS07170 0.48 +2.3
230,789 + EX31_RS07170 0.50 +0.7
230,789 + EX31_RS07170 0.50 +2.1
230,816 - EX31_RS07170 0.51 +1.1
230,884 + EX31_RS07170 0.54 +1.0
230,884 + EX31_RS07170 0.54 -0.9
230,885 - EX31_RS07170 0.54 -0.9
230,885 - EX31_RS07170 0.54 -0.1
231,148 + EX31_RS07170 0.65 -0.9
231,208 + EX31_RS07170 0.68 -1.3
231,208 + EX31_RS07170 0.68 +3.5
231,280 + EX31_RS07170 0.71 -1.1
231,280 + EX31_RS07170 0.71 +0.7
231,281 - EX31_RS07170 0.71 -0.3
231,342 + EX31_RS07170 0.74 -0.3
231,345 + EX31_RS07170 0.74 +0.3
231,345 + EX31_RS07170 0.74 +1.3
231,427 - EX31_RS07170 0.78 -0.3
231,437 - EX31_RS07170 0.78 +0.7
231,819 + -0.3
232,005 + -1.3
232,006 - +2.3
232,029 + +0.4
232,030 - +0.1
232,066 - -0.5
232,223 - EX31_RS07175 0.23 +0.2
232,223 - EX31_RS07175 0.23 -1.6
232,223 - EX31_RS07175 0.23 +1.1
232,255 - EX31_RS07175 0.26 +3.3
232,255 - EX31_RS07175 0.26 +0.1
232,255 - EX31_RS07175 0.26 +1.9
232,262 - EX31_RS07175 0.27 -0.0
232,266 + EX31_RS07175 0.27 -1.6
232,420 - EX31_RS07175 0.42 -0.9
232,420 - EX31_RS07175 0.42 +0.3
232,443 - EX31_RS07175 0.44 -0.5
232,443 - EX31_RS07175 0.44 -0.9
232,471 - EX31_RS07175 0.47 -0.3
232,491 - EX31_RS07175 0.49 +1.0
232,500 + EX31_RS07175 0.49 +0.7
232,501 - EX31_RS07175 0.49 +0.1
232,501 - EX31_RS07175 0.49 +1.5
232,501 - EX31_RS07175 0.49 +1.7
232,501 - EX31_RS07175 0.49 +1.7
232,501 - EX31_RS07175 0.49 -2.1
232,501 - EX31_RS07175 0.49 -1.3
232,501 - EX31_RS07175 0.49 +1.7
232,501 - EX31_RS07175 0.49 -0.9
232,501 - EX31_RS07175 0.49 -2.6
232,501 - EX31_RS07175 0.49 -0.1
232,501 - EX31_RS07175 0.49 -0.4
232,501 - EX31_RS07175 0.49 -2.0
232,501 - EX31_RS07175 0.49 +0.1
232,501 - EX31_RS07175 0.49 -1.3
232,501 - EX31_RS07175 0.49 -3.1
232,501 - EX31_RS07175 0.49 +0.1
232,501 - EX31_RS07175 0.49 +0.3
232,556 - EX31_RS07175 0.55 -0.9
232,566 - EX31_RS07175 0.56 -0.3
232,669 + EX31_RS07175 0.66 +0.7
232,669 + EX31_RS07175 0.66 +0.7
232,670 - EX31_RS07175 0.66 +0.7
232,768 - EX31_RS07175 0.75 -0.9
232,768 - EX31_RS07175 0.75 -0.3
232,803 + EX31_RS07175 0.78 +1.7
232,804 - EX31_RS07175 0.79 -1.6
232,804 - EX31_RS07175 0.79 +0.3
232,832 - EX31_RS07175 0.81 +0.1
232,903 - EX31_RS07175 0.88 +0.7

Or see this region's nucleotide sequence