Strain Fitness in Rahnella sp. WP5 around EX31_RS06280

Experiment: D-Mannitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS06275 and EX31_RS06280 are separated by 166 nucleotidesEX31_RS06280 and EX31_RS06285 are separated by 340 nucleotidesEX31_RS06285 and EX31_RS06290 are separated by 95 nucleotides EX31_RS06275: EX31_RS06275 - D-hexose-6-phosphate mutarotase, at 17,714 to 18,583 _RS06275 EX31_RS06280: EX31_RS06280 - glyceraldehyde-3-phosphate dehydrogenase, at 18,750 to 19,757 _RS06280 EX31_RS06285: EX31_RS06285 - peptide-methionine (R)-S-oxide reductase MsrB, at 20,098 to 20,511 _RS06285 EX31_RS06290: EX31_RS06290 - DUF1315 family protein, at 20,607 to 20,879 _RS06290 Position (kb) 18 19 20Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 17.765 kb on - strandat 17.776 kb on + strandat 17.815 kb on + strand, within EX31_RS06275at 17.914 kb on + strand, within EX31_RS06275at 17.914 kb on + strand, within EX31_RS06275at 17.914 kb on + strand, within EX31_RS06275at 17.915 kb on - strand, within EX31_RS06275at 17.915 kb on - strand, within EX31_RS06275at 17.965 kb on - strand, within EX31_RS06275at 18.064 kb on + strand, within EX31_RS06275at 18.065 kb on - strand, within EX31_RS06275at 18.096 kb on + strand, within EX31_RS06275at 18.097 kb on - strand, within EX31_RS06275at 18.295 kb on + strand, within EX31_RS06275at 18.296 kb on - strand, within EX31_RS06275at 18.584 kb on + strandat 18.614 kb on - strandat 18.632 kb on + strandat 18.632 kb on + strandat 18.632 kb on + strandat 18.632 kb on + strandat 18.633 kb on - strandat 18.744 kb on - strandat 19.837 kb on + strandat 19.837 kb on + strandat 19.837 kb on + strandat 19.838 kb on - strandat 19.838 kb on - strandat 19.838 kb on - strandat 19.846 kb on - strandat 19.864 kb on - strandat 19.933 kb on + strandat 19.933 kb on + strandat 19.934 kb on - strandat 19.934 kb on - strandat 19.934 kb on - strandat 19.934 kb on - strandat 19.934 kb on - strandat 19.935 kb on + strandat 19.935 kb on + strandat 19.935 kb on + strandat 19.935 kb on + strandat 19.935 kb on + strandat 19.936 kb on - strandat 19.936 kb on - strandat 19.936 kb on - strandat 20.002 kb on - strandat 20.008 kb on + strandat 20.008 kb on + strandat 20.049 kb on - strandat 20.058 kb on + strandat 20.058 kb on + strandat 20.227 kb on + strand, within EX31_RS06285at 20.227 kb on + strand, within EX31_RS06285at 20.227 kb on + strand, within EX31_RS06285at 20.228 kb on - strand, within EX31_RS06285at 20.260 kb on + strand, within EX31_RS06285at 20.335 kb on + strand, within EX31_RS06285at 20.446 kb on + strand, within EX31_RS06285at 20.453 kb on + strand, within EX31_RS06285at 20.476 kb on - strandat 20.532 kb on + strandat 20.532 kb on + strandat 20.583 kb on + strandat 20.615 kb on + strandat 20.615 kb on + strandat 20.615 kb on + strandat 20.624 kb on + strandat 20.624 kb on + strandat 20.624 kb on + strandat 20.624 kb on + strandat 20.624 kb on + strandat 20.624 kb on + strandat 20.624 kb on + strandat 20.624 kb on + strandat 20.632 kb on + strandat 20.632 kb on + strandat 20.632 kb on + strandat 20.632 kb on + strandat 20.632 kb on + strandat 20.632 kb on + strandat 20.749 kb on - strand, within EX31_RS06290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
remove
17,765 - -0.7
17,776 + +3.0
17,815 + EX31_RS06275 0.12 -0.9
17,914 + EX31_RS06275 0.23 +1.5
17,914 + EX31_RS06275 0.23 -0.3
17,914 + EX31_RS06275 0.23 +0.7
17,915 - EX31_RS06275 0.23 +0.5
17,915 - EX31_RS06275 0.23 +1.1
17,965 - EX31_RS06275 0.29 +0.5
18,064 + EX31_RS06275 0.40 +1.9
18,065 - EX31_RS06275 0.40 -0.3
18,096 + EX31_RS06275 0.44 -0.3
18,097 - EX31_RS06275 0.44 -0.6
18,295 + EX31_RS06275 0.67 +1.9
18,296 - EX31_RS06275 0.67 +1.7
18,584 + -0.6
18,614 - -0.9
18,632 + -0.3
18,632 + -2.3
18,632 + -1.3
18,632 + +0.4
18,633 - -0.2
18,744 - -0.3
19,837 + +1.7
19,837 + +2.7
19,837 + -0.6
19,838 - +0.0
19,838 - -0.9
19,838 - -0.0
19,846 - +1.1
19,864 - +1.1
19,933 + +1.0
19,933 + -1.4
19,934 - -0.3
19,934 - -0.0
19,934 - -0.3
19,934 - +2.3
19,934 - +0.1
19,935 + +0.8
19,935 + -1.3
19,935 + +0.7
19,935 + +0.5
19,935 + +0.5
19,936 - -0.3
19,936 - -0.9
19,936 - +0.0
20,002 - +0.1
20,008 + -0.3
20,008 + +0.1
20,049 - -0.9
20,058 + +1.3
20,058 + -0.9
20,227 + EX31_RS06285 0.31 +0.6
20,227 + EX31_RS06285 0.31 +0.2
20,227 + EX31_RS06285 0.31 +1.7
20,228 - EX31_RS06285 0.31 +1.3
20,260 + EX31_RS06285 0.39 -0.3
20,335 + EX31_RS06285 0.57 -1.3
20,446 + EX31_RS06285 0.84 -2.3
20,453 + EX31_RS06285 0.86 +1.0
20,476 - +3.0
20,532 + +1.1
20,532 + +0.0
20,583 + -0.7
20,615 + -0.3
20,615 + -0.3
20,615 + +1.1
20,624 + -0.8
20,624 + +1.1
20,624 + -1.4
20,624 + +0.1
20,624 + -1.1
20,624 + +3.0
20,624 + -0.0
20,624 + -0.6
20,632 + +0.0
20,632 + -2.6
20,632 + -0.3
20,632 + -0.5
20,632 + -0.1
20,632 + +4.0
20,749 - EX31_RS06290 0.52 +3.0

Or see this region's nucleotide sequence