Strain Fitness in Rahnella sp. WP5 around EX31_RS05825

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05815 and EX31_RS05820 are separated by 93 nucleotidesEX31_RS05820 and EX31_RS05825 are separated by 136 nucleotidesEX31_RS05825 and EX31_RS05830 are separated by 134 nucleotides EX31_RS05815: EX31_RS05815 - LysE family translocator, at 316,643 to 317,251 _RS05815 EX31_RS05820: EX31_RS05820 - MltR family transcriptional regulator, at 317,345 to 317,893 _RS05820 EX31_RS05825: EX31_RS05825 - mannitol-1-phosphate 5-dehydrogenase, at 318,030 to 319,178 _RS05825 EX31_RS05830: EX31_RS05830 - PTS mannitol transporter subunit IICBA, at 319,313 to 321,226 _RS05830 Position (kb) 318 319 320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 317.071 kb on + strand, within EX31_RS05815at 317.133 kb on + strand, within EX31_RS05815at 317.134 kb on - strand, within EX31_RS05815at 317.134 kb on - strand, within EX31_RS05815at 317.134 kb on - strand, within EX31_RS05815at 317.145 kb on + strand, within EX31_RS05815at 317.145 kb on + strand, within EX31_RS05815at 317.145 kb on + strand, within EX31_RS05815at 317.145 kb on + strand, within EX31_RS05815at 317.146 kb on - strand, within EX31_RS05815at 317.250 kb on - strandat 317.250 kb on - strandat 317.258 kb on + strandat 317.259 kb on - strandat 317.286 kb on - strandat 317.286 kb on - strandat 317.286 kb on - strandat 317.286 kb on - strandat 317.286 kb on - strandat 317.333 kb on + strandat 317.346 kb on + strandat 317.347 kb on - strandat 317.347 kb on - strandat 317.383 kb on + strandat 317.383 kb on + strandat 317.384 kb on - strandat 317.446 kb on - strand, within EX31_RS05820at 317.577 kb on + strand, within EX31_RS05820at 317.578 kb on - strand, within EX31_RS05820at 317.592 kb on + strand, within EX31_RS05820at 317.592 kb on + strand, within EX31_RS05820at 317.593 kb on - strand, within EX31_RS05820at 317.621 kb on + strand, within EX31_RS05820at 317.621 kb on + strand, within EX31_RS05820at 317.621 kb on + strand, within EX31_RS05820at 317.668 kb on - strand, within EX31_RS05820at 317.684 kb on + strand, within EX31_RS05820at 317.684 kb on + strand, within EX31_RS05820at 317.685 kb on - strand, within EX31_RS05820at 317.685 kb on - strand, within EX31_RS05820at 317.685 kb on - strand, within EX31_RS05820at 317.685 kb on - strand, within EX31_RS05820at 317.685 kb on - strand, within EX31_RS05820at 317.685 kb on - strand, within EX31_RS05820at 317.685 kb on - strand, within EX31_RS05820at 317.736 kb on + strand, within EX31_RS05820at 317.736 kb on + strand, within EX31_RS05820at 317.736 kb on + strand, within EX31_RS05820at 317.736 kb on + strand, within EX31_RS05820at 317.737 kb on - strand, within EX31_RS05820at 317.737 kb on - strand, within EX31_RS05820at 317.737 kb on - strand, within EX31_RS05820at 317.737 kb on - strand, within EX31_RS05820at 317.737 kb on - strand, within EX31_RS05820at 317.737 kb on - strand, within EX31_RS05820at 317.748 kb on + strand, within EX31_RS05820at 317.749 kb on - strand, within EX31_RS05820at 317.848 kb on + strandat 317.849 kb on - strandat 317.849 kb on - strandat 317.862 kb on - strandat 317.862 kb on - strandat 317.900 kb on + strandat 317.900 kb on + strandat 317.900 kb on + strandat 317.900 kb on + strandat 317.901 kb on - strandat 317.901 kb on - strandat 317.901 kb on - strandat 317.901 kb on - strandat 317.901 kb on - strandat 318.028 kb on + strandat 318.029 kb on - strandat 318.029 kb on - strandat 318.029 kb on - strandat 318.029 kb on - strandat 318.047 kb on - strandat 318.047 kb on - strandat 318.047 kb on - strandat 318.153 kb on - strand, within EX31_RS05825at 318.178 kb on + strand, within EX31_RS05825at 318.506 kb on - strand, within EX31_RS05825at 318.545 kb on + strand, within EX31_RS05825at 318.777 kb on + strand, within EX31_RS05825at 318.777 kb on + strand, within EX31_RS05825at 318.996 kb on - strand, within EX31_RS05825at 318.996 kb on - strand, within EX31_RS05825at 319.122 kb on + strandat 319.122 kb on + strandat 319.123 kb on - strandat 319.128 kb on - strandat 319.168 kb on - strandat 319.179 kb on - strandat 319.181 kb on + strandat 319.181 kb on + strandat 319.182 kb on - strandat 319.182 kb on - strandat 319.182 kb on - strandat 319.182 kb on - strandat 319.204 kb on + strandat 319.204 kb on + strandat 319.204 kb on + strandat 319.204 kb on + strandat 319.204 kb on + strandat 319.205 kb on - strandat 319.205 kb on - strandat 319.209 kb on + strandat 319.210 kb on - strandat 319.214 kb on + strandat 319.214 kb on + strandat 319.228 kb on + strandat 319.272 kb on + strandat 319.272 kb on + strandat 319.273 kb on - strandat 319.286 kb on + strandat 319.287 kb on - strandat 319.289 kb on + strandat 319.290 kb on - strandat 319.290 kb on - strandat 319.290 kb on - strandat 319.297 kb on + strandat 319.298 kb on - strandat 319.298 kb on - strandat 319.304 kb on + strandat 319.304 kb on + strandat 319.305 kb on - strandat 319.314 kb on + strandat 319.327 kb on + strandat 319.327 kb on + strandat 319.328 kb on - strandat 319.373 kb on - strandat 319.429 kb on + strandat 319.429 kb on + strandat 319.430 kb on - strandat 319.587 kb on + strand, within EX31_RS05830at 319.587 kb on + strand, within EX31_RS05830at 319.587 kb on + strand, within EX31_RS05830at 319.588 kb on - strand, within EX31_RS05830at 319.588 kb on - strand, within EX31_RS05830at 319.588 kb on - strand, within EX31_RS05830at 319.629 kb on + strand, within EX31_RS05830at 319.629 kb on + strand, within EX31_RS05830at 319.629 kb on + strand, within EX31_RS05830at 319.629 kb on + strand, within EX31_RS05830at 319.629 kb on + strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.630 kb on - strand, within EX31_RS05830at 319.644 kb on + strand, within EX31_RS05830at 319.645 kb on - strand, within EX31_RS05830at 319.723 kb on + strand, within EX31_RS05830at 319.723 kb on + strand, within EX31_RS05830at 319.724 kb on - strand, within EX31_RS05830at 319.806 kb on + strand, within EX31_RS05830at 319.807 kb on - strand, within EX31_RS05830at 319.807 kb on - strand, within EX31_RS05830at 319.854 kb on + strand, within EX31_RS05830at 319.854 kb on + strand, within EX31_RS05830at 319.855 kb on - strand, within EX31_RS05830at 319.855 kb on - strand, within EX31_RS05830at 319.855 kb on - strand, within EX31_RS05830at 319.942 kb on + strand, within EX31_RS05830at 319.942 kb on + strand, within EX31_RS05830at 319.942 kb on + strand, within EX31_RS05830at 319.942 kb on + strand, within EX31_RS05830at 320.092 kb on + strand, within EX31_RS05830at 320.092 kb on + strand, within EX31_RS05830at 320.092 kb on + strand, within EX31_RS05830at 320.092 kb on + strand, within EX31_RS05830at 320.096 kb on + strand, within EX31_RS05830at 320.096 kb on + strand, within EX31_RS05830at 320.096 kb on + strand, within EX31_RS05830at 320.096 kb on + strand, within EX31_RS05830at 320.096 kb on + strand, within EX31_RS05830at 320.097 kb on - strand, within EX31_RS05830at 320.097 kb on - strand, within EX31_RS05830at 320.097 kb on - strand, within EX31_RS05830at 320.146 kb on + strand, within EX31_RS05830at 320.147 kb on - strand, within EX31_RS05830at 320.147 kb on - strand, within EX31_RS05830at 320.162 kb on - strand, within EX31_RS05830at 320.171 kb on - strand, within EX31_RS05830at 320.171 kb on - strand, within EX31_RS05830

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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317,071 + EX31_RS05815 0.70 -0.3
317,133 + EX31_RS05815 0.80 +0.2
317,134 - EX31_RS05815 0.81 +0.8
317,134 - EX31_RS05815 0.81 +0.0
317,134 - EX31_RS05815 0.81 +0.2
317,145 + EX31_RS05815 0.82 +0.9
317,145 + EX31_RS05815 0.82 +0.6
317,145 + EX31_RS05815 0.82 -0.2
317,145 + EX31_RS05815 0.82 +0.7
317,146 - EX31_RS05815 0.83 -0.4
317,250 - +0.4
317,250 - -0.0
317,258 + +1.0
317,259 - -0.3
317,286 - +0.4
317,286 - -1.4
317,286 - -0.1
317,286 - -0.6
317,286 - -0.5
317,333 + -0.3
317,346 + +1.4
317,347 - -0.0
317,347 - -0.1
317,383 + -0.3
317,383 + +0.8
317,384 - -0.8
317,446 - EX31_RS05820 0.18 +0.6
317,577 + EX31_RS05820 0.42 -0.2
317,578 - EX31_RS05820 0.42 -0.4
317,592 + EX31_RS05820 0.45 -0.6
317,592 + EX31_RS05820 0.45 +0.2
317,593 - EX31_RS05820 0.45 -0.3
317,621 + EX31_RS05820 0.50 +2.4
317,621 + EX31_RS05820 0.50 +0.5
317,621 + EX31_RS05820 0.50 -0.9
317,668 - EX31_RS05820 0.59 +0.7
317,684 + EX31_RS05820 0.62 +1.1
317,684 + EX31_RS05820 0.62 +0.1
317,685 - EX31_RS05820 0.62 +2.4
317,685 - EX31_RS05820 0.62 -2.0
317,685 - EX31_RS05820 0.62 +0.7
317,685 - EX31_RS05820 0.62 -0.6
317,685 - EX31_RS05820 0.62 +0.5
317,685 - EX31_RS05820 0.62 +1.4
317,685 - EX31_RS05820 0.62 +1.1
317,736 + EX31_RS05820 0.71 -0.7
317,736 + EX31_RS05820 0.71 +0.3
317,736 + EX31_RS05820 0.71 +0.4
317,736 + EX31_RS05820 0.71 +0.2
317,737 - EX31_RS05820 0.71 -1.3
317,737 - EX31_RS05820 0.71 +0.9
317,737 - EX31_RS05820 0.71 +0.5
317,737 - EX31_RS05820 0.71 +0.1
317,737 - EX31_RS05820 0.71 +0.6
317,737 - EX31_RS05820 0.71 -0.0
317,748 + EX31_RS05820 0.73 +0.5
317,749 - EX31_RS05820 0.74 +1.2
317,848 + -0.0
317,849 - +0.7
317,849 - +0.2
317,862 - -1.2
317,862 - -0.7
317,900 + +0.8
317,900 + +1.1
317,900 + +2.0
317,900 + +2.2
317,901 - -0.8
317,901 - +0.9
317,901 - +0.1
317,901 - +0.2
317,901 - +0.6
318,028 + +1.3
318,029 - +0.1
318,029 - -0.8
318,029 - -1.9
318,029 - -0.8
318,047 - -0.7
318,047 - +0.3
318,047 - +0.2
318,153 - EX31_RS05825 0.11 -2.2
318,178 + EX31_RS05825 0.13 -1.4
318,506 - EX31_RS05825 0.41 -1.9
318,545 + EX31_RS05825 0.45 -0.9
318,777 + EX31_RS05825 0.65 -1.6
318,777 + EX31_RS05825 0.65 -0.2
318,996 - EX31_RS05825 0.84 -1.8
318,996 - EX31_RS05825 0.84 -0.9
319,122 + -3.0
319,122 + -2.1
319,123 - -2.9
319,128 - -0.1
319,168 - -2.9
319,179 - -2.4
319,181 + -0.9
319,181 + -1.8
319,182 - -3.1
319,182 - -2.2
319,182 - -2.6
319,182 - -0.5
319,204 + -2.1
319,204 + -0.7
319,204 + -2.7
319,204 + -4.2
319,204 + +0.1
319,205 - -0.0
319,205 - -0.1
319,209 + -3.3
319,210 - +0.5
319,214 + -2.0
319,214 + -2.3
319,228 + -3.1
319,272 + -4.1
319,272 + -2.8
319,273 - -0.0
319,286 + -2.3
319,287 - -0.2
319,289 + -2.5
319,290 - +0.4
319,290 - -0.2
319,290 - -0.8
319,297 + -3.4
319,298 - -1.5
319,298 - -0.3
319,304 + -2.9
319,304 + -0.1
319,305 - +0.2
319,314 + -3.8
319,327 + -3.0
319,327 + -2.2
319,328 - -0.6
319,373 - -3.0
319,429 + -1.4
319,429 + -2.3
319,430 - -1.6
319,587 + EX31_RS05830 0.14 -1.9
319,587 + EX31_RS05830 0.14 -3.6
319,587 + EX31_RS05830 0.14 -1.3
319,588 - EX31_RS05830 0.14 -2.8
319,588 - EX31_RS05830 0.14 -2.9
319,588 - EX31_RS05830 0.14 -2.2
319,629 + EX31_RS05830 0.17 -2.3
319,629 + EX31_RS05830 0.17 -2.4
319,629 + EX31_RS05830 0.17 -0.6
319,629 + EX31_RS05830 0.17 -3.3
319,629 + EX31_RS05830 0.17 -2.6
319,630 - EX31_RS05830 0.17 +0.4
319,630 - EX31_RS05830 0.17 -2.9
319,630 - EX31_RS05830 0.17 -1.4
319,630 - EX31_RS05830 0.17 -1.7
319,630 - EX31_RS05830 0.17 +0.4
319,630 - EX31_RS05830 0.17 -3.4
319,630 - EX31_RS05830 0.17 -1.4
319,630 - EX31_RS05830 0.17 -0.2
319,630 - EX31_RS05830 0.17 -0.2
319,644 + EX31_RS05830 0.17 -1.9
319,645 - EX31_RS05830 0.17 -2.5
319,723 + EX31_RS05830 0.21 -2.1
319,723 + EX31_RS05830 0.21 +1.4
319,724 - EX31_RS05830 0.21 -3.0
319,806 + EX31_RS05830 0.26 -2.3
319,807 - EX31_RS05830 0.26 -3.7
319,807 - EX31_RS05830 0.26 -2.0
319,854 + EX31_RS05830 0.28 -1.4
319,854 + EX31_RS05830 0.28 -3.1
319,855 - EX31_RS05830 0.28 -0.2
319,855 - EX31_RS05830 0.28 -3.5
319,855 - EX31_RS05830 0.28 -0.3
319,942 + EX31_RS05830 0.33 -0.9
319,942 + EX31_RS05830 0.33 -2.3
319,942 + EX31_RS05830 0.33 -3.9
319,942 + EX31_RS05830 0.33 -1.9
320,092 + EX31_RS05830 0.41 -1.3
320,092 + EX31_RS05830 0.41 -3.8
320,092 + EX31_RS05830 0.41 -2.5
320,092 + EX31_RS05830 0.41 -2.4
320,096 + EX31_RS05830 0.41 -2.0
320,096 + EX31_RS05830 0.41 -2.9
320,096 + EX31_RS05830 0.41 -2.5
320,096 + EX31_RS05830 0.41 -2.9
320,096 + EX31_RS05830 0.41 -2.7
320,097 - EX31_RS05830 0.41 +0.1
320,097 - EX31_RS05830 0.41 -0.9
320,097 - EX31_RS05830 0.41 -1.9
320,146 + EX31_RS05830 0.44 -0.8
320,147 - EX31_RS05830 0.44 -1.8
320,147 - EX31_RS05830 0.44 -2.4
320,162 - EX31_RS05830 0.44 -0.6
320,171 - EX31_RS05830 0.45 -4.4
320,171 - EX31_RS05830 0.45 -0.7

Or see this region's nucleotide sequence