Strain Fitness in Rahnella sp. WP5 around EX31_RS04930

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04920 and EX31_RS04925 are separated by 97 nucleotidesEX31_RS04925 and EX31_RS04930 are separated by 53 nucleotidesEX31_RS04930 and EX31_RS04935 are separated by 8 nucleotides EX31_RS04920: EX31_RS04920 - DNA utilization protein GntX, at 109,699 to 110,388 _RS04920 EX31_RS04925: EX31_RS04925 - Fe-S biogenesis protein NfuA, at 110,486 to 111,061 _RS04925 EX31_RS04930: EX31_RS04930 - 4-alpha-glucanotransferase, at 111,115 to 113,190 _RS04930 EX31_RS04935: EX31_RS04935 - maltodextrin phosphorylase, at 113,199 to 115,613 _RS04935 Position (kb) 111 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 110.143 kb on + strand, within EX31_RS04920at 110.143 kb on + strand, within EX31_RS04920at 110.144 kb on - strand, within EX31_RS04920at 110.302 kb on - strand, within EX31_RS04920at 110.331 kb on + strandat 110.364 kb on + strandat 110.365 kb on - strandat 110.365 kb on - strandat 110.365 kb on - strandat 110.365 kb on - strandat 110.378 kb on + strandat 110.379 kb on - strandat 110.386 kb on + strandat 110.386 kb on + strandat 110.387 kb on - strandat 110.400 kb on + strandat 110.400 kb on + strandat 110.400 kb on + strandat 110.401 kb on - strandat 110.445 kb on + strandat 110.445 kb on + strandat 110.445 kb on + strandat 110.446 kb on - strandat 110.446 kb on - strandat 110.446 kb on - strandat 110.458 kb on + strandat 110.458 kb on + strandat 110.459 kb on - strandat 110.459 kb on - strandat 110.459 kb on - strandat 110.463 kb on + strandat 110.471 kb on + strandat 110.485 kb on + strandat 110.486 kb on - strandat 110.494 kb on + strandat 110.495 kb on - strandat 110.612 kb on + strand, within EX31_RS04925at 110.631 kb on + strand, within EX31_RS04925at 110.632 kb on - strand, within EX31_RS04925at 110.689 kb on - strand, within EX31_RS04925at 110.700 kb on - strand, within EX31_RS04925at 110.700 kb on - strand, within EX31_RS04925at 110.700 kb on - strand, within EX31_RS04925at 110.783 kb on - strand, within EX31_RS04925at 110.853 kb on + strand, within EX31_RS04925at 111.057 kb on - strandat 111.057 kb on - strandat 111.057 kb on - strandat 111.057 kb on - strandat 111.116 kb on + strandat 111.136 kb on + strandat 111.136 kb on + strandat 111.136 kb on + strandat 111.160 kb on - strandat 111.219 kb on - strandat 111.315 kb on - strandat 111.315 kb on - strandat 111.411 kb on + strand, within EX31_RS04930at 111.411 kb on + strand, within EX31_RS04930at 111.411 kb on + strand, within EX31_RS04930at 111.429 kb on + strand, within EX31_RS04930at 111.429 kb on + strand, within EX31_RS04930at 111.430 kb on - strand, within EX31_RS04930at 111.430 kb on - strand, within EX31_RS04930at 111.502 kb on + strand, within EX31_RS04930at 111.503 kb on - strand, within EX31_RS04930at 111.521 kb on + strand, within EX31_RS04930at 111.521 kb on + strand, within EX31_RS04930at 111.522 kb on - strand, within EX31_RS04930at 111.538 kb on + strand, within EX31_RS04930at 111.539 kb on - strand, within EX31_RS04930at 111.578 kb on + strand, within EX31_RS04930at 111.578 kb on + strand, within EX31_RS04930at 111.579 kb on - strand, within EX31_RS04930at 111.624 kb on - strand, within EX31_RS04930at 111.624 kb on - strand, within EX31_RS04930at 111.635 kb on + strand, within EX31_RS04930at 111.636 kb on - strand, within EX31_RS04930at 111.636 kb on - strand, within EX31_RS04930at 111.641 kb on + strand, within EX31_RS04930at 111.641 kb on + strand, within EX31_RS04930at 111.641 kb on + strand, within EX31_RS04930at 111.641 kb on + strand, within EX31_RS04930at 111.641 kb on + strand, within EX31_RS04930at 111.642 kb on - strand, within EX31_RS04930at 111.642 kb on - strand, within EX31_RS04930at 111.776 kb on + strand, within EX31_RS04930at 111.777 kb on - strand, within EX31_RS04930at 111.777 kb on - strand, within EX31_RS04930at 111.777 kb on - strand, within EX31_RS04930at 111.777 kb on - strand, within EX31_RS04930at 111.777 kb on - strand, within EX31_RS04930at 111.777 kb on - strand, within EX31_RS04930at 111.777 kb on - strand, within EX31_RS04930at 111.777 kb on - strand, within EX31_RS04930at 111.889 kb on + strand, within EX31_RS04930at 111.890 kb on - strand, within EX31_RS04930at 112.007 kb on + strand, within EX31_RS04930at 112.007 kb on + strand, within EX31_RS04930at 112.008 kb on - strand, within EX31_RS04930at 112.110 kb on - strand, within EX31_RS04930at 112.110 kb on - strand, within EX31_RS04930at 112.155 kb on - strand, within EX31_RS04930at 112.175 kb on + strand, within EX31_RS04930at 112.220 kb on + strand, within EX31_RS04930at 112.220 kb on + strand, within EX31_RS04930at 112.220 kb on + strand, within EX31_RS04930at 112.221 kb on - strand, within EX31_RS04930at 112.255 kb on + strand, within EX31_RS04930at 112.278 kb on + strand, within EX31_RS04930at 112.278 kb on + strand, within EX31_RS04930at 112.278 kb on + strand, within EX31_RS04930at 112.279 kb on - strand, within EX31_RS04930at 112.279 kb on - strand, within EX31_RS04930at 112.279 kb on - strand, within EX31_RS04930at 112.279 kb on - strand, within EX31_RS04930at 112.279 kb on - strand, within EX31_RS04930at 112.279 kb on - strand, within EX31_RS04930at 112.279 kb on - strand, within EX31_RS04930at 112.353 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.553 kb on + strand, within EX31_RS04930at 112.554 kb on - strand, within EX31_RS04930at 112.554 kb on - strand, within EX31_RS04930at 112.554 kb on - strand, within EX31_RS04930at 112.590 kb on - strand, within EX31_RS04930at 112.590 kb on - strand, within EX31_RS04930at 112.620 kb on - strand, within EX31_RS04930at 112.620 kb on - strand, within EX31_RS04930at 112.631 kb on - strand, within EX31_RS04930at 112.720 kb on - strand, within EX31_RS04930at 112.737 kb on + strand, within EX31_RS04930at 112.737 kb on + strand, within EX31_RS04930at 112.738 kb on - strand, within EX31_RS04930at 112.739 kb on + strand, within EX31_RS04930at 112.739 kb on + strand, within EX31_RS04930at 112.740 kb on - strand, within EX31_RS04930at 112.740 kb on - strand, within EX31_RS04930at 112.796 kb on + strand, within EX31_RS04930at 112.796 kb on + strand, within EX31_RS04930at 112.797 kb on - strand, within EX31_RS04930at 112.840 kb on - strand, within EX31_RS04930at 113.010 kb on + strandat 113.010 kb on + strandat 113.011 kb on - strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.128 kb on - strandat 113.128 kb on - strandat 113.128 kb on - strandat 113.128 kb on - strandat 113.143 kb on + strandat 113.143 kb on + strandat 113.144 kb on - strandat 113.144 kb on - strandat 113.144 kb on - strandat 113.201 kb on - strandat 113.201 kb on - strandat 113.201 kb on - strandat 113.231 kb on - strandat 113.265 kb on + strandat 113.266 kb on - strandat 113.266 kb on - strandat 113.288 kb on + strandat 113.350 kb on + strandat 113.350 kb on + strandat 113.350 kb on + strandat 113.351 kb on - strandat 113.351 kb on - strandat 113.351 kb on - strandat 113.377 kb on + strandat 113.378 kb on - strandat 113.444 kb on - strand, within EX31_RS04935at 113.515 kb on + strand, within EX31_RS04935at 113.516 kb on - strand, within EX31_RS04935at 113.564 kb on + strand, within EX31_RS04935at 113.564 kb on + strand, within EX31_RS04935at 113.564 kb on + strand, within EX31_RS04935at 113.564 kb on + strand, within EX31_RS04935at 113.565 kb on - strand, within EX31_RS04935at 113.565 kb on - strand, within EX31_RS04935at 113.658 kb on - strand, within EX31_RS04935at 113.749 kb on + strand, within EX31_RS04935at 113.749 kb on + strand, within EX31_RS04935at 113.830 kb on + strand, within EX31_RS04935at 113.831 kb on - strand, within EX31_RS04935at 113.831 kb on - strand, within EX31_RS04935at 113.831 kb on - strand, within EX31_RS04935at 113.834 kb on + strand, within EX31_RS04935at 113.835 kb on - strand, within EX31_RS04935at 113.851 kb on + strand, within EX31_RS04935at 113.851 kb on + strand, within EX31_RS04935at 113.851 kb on + strand, within EX31_RS04935at 113.851 kb on + strand, within EX31_RS04935at 113.851 kb on + strand, within EX31_RS04935at 113.852 kb on - strand, within EX31_RS04935at 113.854 kb on + strand, within EX31_RS04935at 113.945 kb on + strand, within EX31_RS04935at 113.945 kb on + strand, within EX31_RS04935at 113.945 kb on + strand, within EX31_RS04935at 113.945 kb on + strand, within EX31_RS04935at 113.945 kb on + strand, within EX31_RS04935at 113.946 kb on - strand, within EX31_RS04935at 113.974 kb on + strand, within EX31_RS04935at 113.974 kb on + strand, within EX31_RS04935at 113.974 kb on + strand, within EX31_RS04935at 113.975 kb on - strand, within EX31_RS04935at 113.975 kb on - strand, within EX31_RS04935at 113.975 kb on - strand, within EX31_RS04935at 113.975 kb on - strand, within EX31_RS04935at 113.975 kb on - strand, within EX31_RS04935at 113.975 kb on - strand, within EX31_RS04935at 113.990 kb on + strand, within EX31_RS04935at 113.991 kb on - strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.997 kb on + strand, within EX31_RS04935at 113.998 kb on - strand, within EX31_RS04935at 113.998 kb on - strand, within EX31_RS04935at 113.998 kb on - strand, within EX31_RS04935at 113.998 kb on - strand, within EX31_RS04935at 114.021 kb on - strand, within EX31_RS04935at 114.021 kb on - strand, within EX31_RS04935at 114.049 kb on + strand, within EX31_RS04935at 114.049 kb on + strand, within EX31_RS04935at 114.049 kb on + strand, within EX31_RS04935at 114.050 kb on - strand, within EX31_RS04935at 114.050 kb on - strand, within EX31_RS04935at 114.050 kb on - strand, within EX31_RS04935at 114.152 kb on + strand, within EX31_RS04935at 114.152 kb on + strand, within EX31_RS04935at 114.153 kb on - strand, within EX31_RS04935at 114.153 kb on - strand, within EX31_RS04935

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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110,143 + EX31_RS04920 0.64 +0.5
110,143 + EX31_RS04920 0.64 +0.9
110,144 - EX31_RS04920 0.64 -0.5
110,302 - EX31_RS04920 0.87 +1.6
110,331 + +0.2
110,364 + -0.0
110,365 - -0.2
110,365 - -0.2
110,365 - +0.4
110,365 - -0.2
110,378 + -0.1
110,379 - +0.1
110,386 + +1.2
110,386 + -0.7
110,387 - -0.7
110,400 + +1.1
110,400 + -0.9
110,400 + -1.3
110,401 - +0.3
110,445 + +0.0
110,445 + -1.1
110,445 + -0.5
110,446 - -0.3
110,446 - +0.8
110,446 - -0.1
110,458 + +0.9
110,458 + -0.1
110,459 - -1.7
110,459 - +0.1
110,459 - -0.4
110,463 + +1.5
110,471 + +2.3
110,485 + -0.8
110,486 - -2.4
110,494 + +1.2
110,495 - -1.5
110,612 + EX31_RS04925 0.22 -0.6
110,631 + EX31_RS04925 0.25 -1.2
110,632 - EX31_RS04925 0.25 +1.3
110,689 - EX31_RS04925 0.35 -1.8
110,700 - EX31_RS04925 0.37 -1.6
110,700 - EX31_RS04925 0.37 -0.2
110,700 - EX31_RS04925 0.37 +1.3
110,783 - EX31_RS04925 0.52 +0.0
110,853 + EX31_RS04925 0.64 +0.5
111,057 - -1.2
111,057 - -1.6
111,057 - +0.6
111,057 - +0.3
111,116 + +0.3
111,136 + -0.3
111,136 + +0.2
111,136 + +0.0
111,160 - +0.3
111,219 - -0.8
111,315 - +2.1
111,315 - +0.3
111,411 + EX31_RS04930 0.14 +0.4
111,411 + EX31_RS04930 0.14 -0.3
111,411 + EX31_RS04930 0.14 +0.5
111,429 + EX31_RS04930 0.15 +0.3
111,429 + EX31_RS04930 0.15 +0.3
111,430 - EX31_RS04930 0.15 -0.4
111,430 - EX31_RS04930 0.15 +0.0
111,502 + EX31_RS04930 0.19 -1.8
111,503 - EX31_RS04930 0.19 -2.9
111,521 + EX31_RS04930 0.20 +0.3
111,521 + EX31_RS04930 0.20 -0.1
111,522 - EX31_RS04930 0.20 -0.7
111,538 + EX31_RS04930 0.20 -1.7
111,539 - EX31_RS04930 0.20 +1.1
111,578 + EX31_RS04930 0.22 -0.5
111,578 + EX31_RS04930 0.22 -0.4
111,579 - EX31_RS04930 0.22 +0.5
111,624 - EX31_RS04930 0.25 -0.1
111,624 - EX31_RS04930 0.25 +0.2
111,635 + EX31_RS04930 0.25 +0.8
111,636 - EX31_RS04930 0.25 -0.3
111,636 - EX31_RS04930 0.25 +0.3
111,641 + EX31_RS04930 0.25 +0.1
111,641 + EX31_RS04930 0.25 +0.9
111,641 + EX31_RS04930 0.25 +0.4
111,641 + EX31_RS04930 0.25 +1.2
111,641 + EX31_RS04930 0.25 +0.4
111,642 - EX31_RS04930 0.25 -1.1
111,642 - EX31_RS04930 0.25 +0.7
111,776 + EX31_RS04930 0.32 -0.4
111,777 - EX31_RS04930 0.32 -2.4
111,777 - EX31_RS04930 0.32 +0.2
111,777 - EX31_RS04930 0.32 -1.2
111,777 - EX31_RS04930 0.32 -0.2
111,777 - EX31_RS04930 0.32 +0.2
111,777 - EX31_RS04930 0.32 -0.0
111,777 - EX31_RS04930 0.32 -0.2
111,777 - EX31_RS04930 0.32 -0.5
111,889 + EX31_RS04930 0.37 +1.4
111,890 - EX31_RS04930 0.37 +0.6
112,007 + EX31_RS04930 0.43 -0.2
112,007 + EX31_RS04930 0.43 -1.2
112,008 - EX31_RS04930 0.43 +0.0
112,110 - EX31_RS04930 0.48 -1.4
112,110 - EX31_RS04930 0.48 +0.3
112,155 - EX31_RS04930 0.50 -0.2
112,175 + EX31_RS04930 0.51 +0.8
112,220 + EX31_RS04930 0.53 +0.6
112,220 + EX31_RS04930 0.53 -2.1
112,220 + EX31_RS04930 0.53 +0.5
112,221 - EX31_RS04930 0.53 +0.8
112,255 + EX31_RS04930 0.55 -0.2
112,278 + EX31_RS04930 0.56 -0.5
112,278 + EX31_RS04930 0.56 +0.4
112,278 + EX31_RS04930 0.56 +0.8
112,279 - EX31_RS04930 0.56 -0.3
112,279 - EX31_RS04930 0.56 -0.6
112,279 - EX31_RS04930 0.56 +0.0
112,279 - EX31_RS04930 0.56 +0.8
112,279 - EX31_RS04930 0.56 -1.0
112,279 - EX31_RS04930 0.56 -1.1
112,279 - EX31_RS04930 0.56 +1.0
112,353 + EX31_RS04930 0.60 +0.0
112,553 + EX31_RS04930 0.69 -0.3
112,553 + EX31_RS04930 0.69 +0.0
112,553 + EX31_RS04930 0.69 +0.9
112,553 + EX31_RS04930 0.69 +0.2
112,553 + EX31_RS04930 0.69 +1.7
112,553 + EX31_RS04930 0.69 -0.2
112,553 + EX31_RS04930 0.69 -1.0
112,553 + EX31_RS04930 0.69 +0.5
112,553 + EX31_RS04930 0.69 -0.7
112,553 + EX31_RS04930 0.69 -0.5
112,554 - EX31_RS04930 0.69 +0.4
112,554 - EX31_RS04930 0.69 -0.5
112,554 - EX31_RS04930 0.69 +1.3
112,590 - EX31_RS04930 0.71 +0.6
112,590 - EX31_RS04930 0.71 -0.3
112,620 - EX31_RS04930 0.72 +0.1
112,620 - EX31_RS04930 0.72 +0.7
112,631 - EX31_RS04930 0.73 -0.9
112,720 - EX31_RS04930 0.77 -0.8
112,737 + EX31_RS04930 0.78 +0.7
112,737 + EX31_RS04930 0.78 +2.8
112,738 - EX31_RS04930 0.78 +1.3
112,739 + EX31_RS04930 0.78 -2.6
112,739 + EX31_RS04930 0.78 -0.4
112,740 - EX31_RS04930 0.78 +0.5
112,740 - EX31_RS04930 0.78 -0.1
112,796 + EX31_RS04930 0.81 +1.4
112,796 + EX31_RS04930 0.81 +0.0
112,797 - EX31_RS04930 0.81 +0.0
112,840 - EX31_RS04930 0.83 -0.8
113,010 + +1.7
113,010 + +0.3
113,011 - -0.9
113,127 + -0.4
113,127 + -1.0
113,127 + -0.9
113,128 - +0.1
113,128 - -0.6
113,128 - +0.3
113,128 - +0.1
113,143 + -2.1
113,143 + +1.6
113,144 - +2.1
113,144 - -2.2
113,144 - -0.2
113,201 - +0.0
113,201 - +0.2
113,201 - +0.1
113,231 - +0.0
113,265 + -0.4
113,266 - +0.2
113,266 - +0.5
113,288 + -0.4
113,350 + +1.0
113,350 + +0.2
113,350 + -0.5
113,351 - +2.9
113,351 - +1.5
113,351 - +0.1
113,377 + -0.4
113,378 - +0.6
113,444 - EX31_RS04935 0.10 +0.4
113,515 + EX31_RS04935 0.13 -0.2
113,516 - EX31_RS04935 0.13 +0.1
113,564 + EX31_RS04935 0.15 -0.7
113,564 + EX31_RS04935 0.15 +0.6
113,564 + EX31_RS04935 0.15 -0.2
113,564 + EX31_RS04935 0.15 +0.4
113,565 - EX31_RS04935 0.15 +0.1
113,565 - EX31_RS04935 0.15 -0.5
113,658 - EX31_RS04935 0.19 -0.3
113,749 + EX31_RS04935 0.23 +0.4
113,749 + EX31_RS04935 0.23 +0.7
113,830 + EX31_RS04935 0.26 +0.5
113,831 - EX31_RS04935 0.26 +0.6
113,831 - EX31_RS04935 0.26 +1.0
113,831 - EX31_RS04935 0.26 -0.2
113,834 + EX31_RS04935 0.26 +0.7
113,835 - EX31_RS04935 0.26 -1.1
113,851 + EX31_RS04935 0.27 +0.3
113,851 + EX31_RS04935 0.27 +0.6
113,851 + EX31_RS04935 0.27 -1.5
113,851 + EX31_RS04935 0.27 -0.2
113,851 + EX31_RS04935 0.27 -0.8
113,852 - EX31_RS04935 0.27 -1.5
113,854 + EX31_RS04935 0.27 +0.6
113,945 + EX31_RS04935 0.31 +1.2
113,945 + EX31_RS04935 0.31 -1.2
113,945 + EX31_RS04935 0.31 +0.3
113,945 + EX31_RS04935 0.31 +1.1
113,945 + EX31_RS04935 0.31 -0.3
113,946 - EX31_RS04935 0.31 -0.0
113,974 + EX31_RS04935 0.32 +1.4
113,974 + EX31_RS04935 0.32 -0.7
113,974 + EX31_RS04935 0.32 +0.5
113,975 - EX31_RS04935 0.32 -0.2
113,975 - EX31_RS04935 0.32 -0.9
113,975 - EX31_RS04935 0.32 +2.3
113,975 - EX31_RS04935 0.32 +0.3
113,975 - EX31_RS04935 0.32 -1.1
113,975 - EX31_RS04935 0.32 -0.2
113,990 + EX31_RS04935 0.33 +0.6
113,991 - EX31_RS04935 0.33 +0.7
113,997 + EX31_RS04935 0.33 +0.1
113,997 + EX31_RS04935 0.33 +0.6
113,997 + EX31_RS04935 0.33 -0.1
113,997 + EX31_RS04935 0.33 -0.4
113,997 + EX31_RS04935 0.33 -1.8
113,997 + EX31_RS04935 0.33 -1.0
113,997 + EX31_RS04935 0.33 +1.3
113,997 + EX31_RS04935 0.33 +1.3
113,997 + EX31_RS04935 0.33 +0.7
113,998 - EX31_RS04935 0.33 +0.9
113,998 - EX31_RS04935 0.33 -0.1
113,998 - EX31_RS04935 0.33 -0.2
113,998 - EX31_RS04935 0.33 -0.2
114,021 - EX31_RS04935 0.34 +0.6
114,021 - EX31_RS04935 0.34 -0.8
114,049 + EX31_RS04935 0.35 +0.1
114,049 + EX31_RS04935 0.35 -0.1
114,049 + EX31_RS04935 0.35 +0.3
114,050 - EX31_RS04935 0.35 +0.4
114,050 - EX31_RS04935 0.35 +0.6
114,050 - EX31_RS04935 0.35 +0.8
114,152 + EX31_RS04935 0.39 +1.9
114,152 + EX31_RS04935 0.39 -1.2
114,153 - EX31_RS04935 0.40 +0.8
114,153 - EX31_RS04935 0.40 -0.2

Or see this region's nucleotide sequence