Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04920 and EX31_RS04925 are separated by 97 nucleotides EX31_RS04925 and EX31_RS04930 are separated by 53 nucleotides EX31_RS04930 and EX31_RS04935 are separated by 8 nucleotides
EX31_RS04920: EX31_RS04920 - DNA utilization protein GntX, at 109,699 to 110,388
_RS04920
EX31_RS04925: EX31_RS04925 - Fe-S biogenesis protein NfuA, at 110,486 to 111,061
_RS04925
EX31_RS04930: EX31_RS04930 - 4-alpha-glucanotransferase, at 111,115 to 113,190
_RS04930
EX31_RS04935: EX31_RS04935 - maltodextrin phosphorylase, at 113,199 to 115,613
_RS04935
Position (kb)
111
112
113
114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 110.143 kb on + strand, within EX31_RS04920 at 110.143 kb on + strand, within EX31_RS04920 at 110.144 kb on - strand, within EX31_RS04920 at 110.302 kb on - strand, within EX31_RS04920 at 110.331 kb on + strand at 110.364 kb on + strand at 110.365 kb on - strand at 110.365 kb on - strand at 110.365 kb on - strand at 110.365 kb on - strand at 110.378 kb on + strand at 110.379 kb on - strand at 110.386 kb on + strand at 110.386 kb on + strand at 110.387 kb on - strand at 110.400 kb on + strand at 110.400 kb on + strand at 110.400 kb on + strand at 110.401 kb on - strand at 110.445 kb on + strand at 110.445 kb on + strand at 110.445 kb on + strand at 110.446 kb on - strand at 110.446 kb on - strand at 110.446 kb on - strand at 110.458 kb on + strand at 110.458 kb on + strand at 110.459 kb on - strand at 110.459 kb on - strand at 110.459 kb on - strand at 110.463 kb on + strand at 110.471 kb on + strand at 110.485 kb on + strand at 110.486 kb on - strand at 110.494 kb on + strand at 110.495 kb on - strand at 110.612 kb on + strand, within EX31_RS04925 at 110.631 kb on + strand, within EX31_RS04925 at 110.632 kb on - strand, within EX31_RS04925 at 110.689 kb on - strand, within EX31_RS04925 at 110.700 kb on - strand, within EX31_RS04925 at 110.700 kb on - strand, within EX31_RS04925 at 110.700 kb on - strand, within EX31_RS04925 at 110.783 kb on - strand, within EX31_RS04925 at 110.853 kb on + strand, within EX31_RS04925 at 111.057 kb on - strand at 111.057 kb on - strand at 111.057 kb on - strand at 111.057 kb on - strand at 111.116 kb on + strand at 111.136 kb on + strand at 111.136 kb on + strand at 111.136 kb on + strand at 111.160 kb on - strand at 111.219 kb on - strand at 111.315 kb on - strand at 111.315 kb on - strand at 111.411 kb on + strand, within EX31_RS04930 at 111.411 kb on + strand, within EX31_RS04930 at 111.411 kb on + strand, within EX31_RS04930 at 111.429 kb on + strand, within EX31_RS04930 at 111.429 kb on + strand, within EX31_RS04930 at 111.430 kb on - strand, within EX31_RS04930 at 111.430 kb on - strand, within EX31_RS04930 at 111.502 kb on + strand, within EX31_RS04930 at 111.503 kb on - strand, within EX31_RS04930 at 111.521 kb on + strand, within EX31_RS04930 at 111.521 kb on + strand, within EX31_RS04930 at 111.522 kb on - strand, within EX31_RS04930 at 111.538 kb on + strand, within EX31_RS04930 at 111.539 kb on - strand, within EX31_RS04930 at 111.578 kb on + strand, within EX31_RS04930 at 111.578 kb on + strand, within EX31_RS04930 at 111.579 kb on - strand, within EX31_RS04930 at 111.624 kb on - strand, within EX31_RS04930 at 111.624 kb on - strand, within EX31_RS04930 at 111.635 kb on + strand, within EX31_RS04930 at 111.636 kb on - strand, within EX31_RS04930 at 111.636 kb on - strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.642 kb on - strand, within EX31_RS04930 at 111.642 kb on - strand, within EX31_RS04930 at 111.776 kb on + strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.889 kb on + strand, within EX31_RS04930 at 111.890 kb on - strand, within EX31_RS04930 at 112.007 kb on + strand, within EX31_RS04930 at 112.007 kb on + strand, within EX31_RS04930 at 112.008 kb on - strand, within EX31_RS04930 at 112.110 kb on - strand, within EX31_RS04930 at 112.110 kb on - strand, within EX31_RS04930 at 112.155 kb on - strand, within EX31_RS04930 at 112.175 kb on + strand, within EX31_RS04930 at 112.220 kb on + strand, within EX31_RS04930 at 112.220 kb on + strand, within EX31_RS04930 at 112.220 kb on + strand, within EX31_RS04930 at 112.221 kb on - strand, within EX31_RS04930 at 112.255 kb on + strand, within EX31_RS04930 at 112.278 kb on + strand, within EX31_RS04930 at 112.278 kb on + strand, within EX31_RS04930 at 112.278 kb on + strand, within EX31_RS04930 at 112.279 kb on - strand, within EX31_RS04930 at 112.279 kb on - strand, within EX31_RS04930 at 112.279 kb on - strand, within EX31_RS04930 at 112.279 kb on - strand, within EX31_RS04930 at 112.279 kb on - strand, within EX31_RS04930 at 112.279 kb on - strand, within EX31_RS04930 at 112.279 kb on - strand, within EX31_RS04930 at 112.353 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.553 kb on + strand, within EX31_RS04930 at 112.554 kb on - strand, within EX31_RS04930 at 112.554 kb on - strand, within EX31_RS04930 at 112.554 kb on - strand, within EX31_RS04930 at 112.590 kb on - strand, within EX31_RS04930 at 112.590 kb on - strand, within EX31_RS04930 at 112.620 kb on - strand, within EX31_RS04930 at 112.620 kb on - strand, within EX31_RS04930 at 112.631 kb on - strand, within EX31_RS04930 at 112.720 kb on - strand, within EX31_RS04930 at 112.737 kb on + strand, within EX31_RS04930 at 112.737 kb on + strand, within EX31_RS04930 at 112.738 kb on - strand, within EX31_RS04930 at 112.739 kb on + strand, within EX31_RS04930 at 112.739 kb on + strand, within EX31_RS04930 at 112.740 kb on - strand, within EX31_RS04930 at 112.740 kb on - strand, within EX31_RS04930 at 112.796 kb on + strand, within EX31_RS04930 at 112.796 kb on + strand, within EX31_RS04930 at 112.797 kb on - strand, within EX31_RS04930 at 112.840 kb on - strand, within EX31_RS04930 at 113.010 kb on + strand at 113.010 kb on + strand at 113.011 kb on - strand at 113.127 kb on + strand at 113.127 kb on + strand at 113.127 kb on + strand at 113.128 kb on - strand at 113.128 kb on - strand at 113.128 kb on - strand at 113.128 kb on - strand at 113.143 kb on + strand at 113.143 kb on + strand at 113.144 kb on - strand at 113.144 kb on - strand at 113.144 kb on - strand at 113.201 kb on - strand at 113.201 kb on - strand at 113.201 kb on - strand at 113.231 kb on - strand at 113.265 kb on + strand at 113.266 kb on - strand at 113.266 kb on - strand at 113.288 kb on + strand at 113.350 kb on + strand at 113.350 kb on + strand at 113.350 kb on + strand at 113.351 kb on - strand at 113.351 kb on - strand at 113.351 kb on - strand at 113.377 kb on + strand at 113.378 kb on - strand at 113.444 kb on - strand, within EX31_RS04935 at 113.515 kb on + strand, within EX31_RS04935 at 113.516 kb on - strand, within EX31_RS04935 at 113.564 kb on + strand, within EX31_RS04935 at 113.564 kb on + strand, within EX31_RS04935 at 113.564 kb on + strand, within EX31_RS04935 at 113.564 kb on + strand, within EX31_RS04935 at 113.565 kb on - strand, within EX31_RS04935 at 113.565 kb on - strand, within EX31_RS04935 at 113.658 kb on - strand, within EX31_RS04935 at 113.749 kb on + strand, within EX31_RS04935 at 113.749 kb on + strand, within EX31_RS04935 at 113.830 kb on + strand, within EX31_RS04935 at 113.831 kb on - strand, within EX31_RS04935 at 113.831 kb on - strand, within EX31_RS04935 at 113.831 kb on - strand, within EX31_RS04935 at 113.834 kb on + strand, within EX31_RS04935 at 113.835 kb on - strand, within EX31_RS04935 at 113.851 kb on + strand, within EX31_RS04935 at 113.851 kb on + strand, within EX31_RS04935 at 113.851 kb on + strand, within EX31_RS04935 at 113.851 kb on + strand, within EX31_RS04935 at 113.851 kb on + strand, within EX31_RS04935 at 113.852 kb on - strand, within EX31_RS04935 at 113.854 kb on + strand, within EX31_RS04935 at 113.945 kb on + strand, within EX31_RS04935 at 113.945 kb on + strand, within EX31_RS04935 at 113.945 kb on + strand, within EX31_RS04935 at 113.945 kb on + strand, within EX31_RS04935 at 113.945 kb on + strand, within EX31_RS04935 at 113.946 kb on - strand, within EX31_RS04935 at 113.974 kb on + strand, within EX31_RS04935 at 113.974 kb on + strand, within EX31_RS04935 at 113.974 kb on + strand, within EX31_RS04935 at 113.975 kb on - strand, within EX31_RS04935 at 113.975 kb on - strand, within EX31_RS04935 at 113.975 kb on - strand, within EX31_RS04935 at 113.975 kb on - strand, within EX31_RS04935 at 113.975 kb on - strand, within EX31_RS04935 at 113.975 kb on - strand, within EX31_RS04935 at 113.990 kb on + strand, within EX31_RS04935 at 113.991 kb on - strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.997 kb on + strand, within EX31_RS04935 at 113.998 kb on - strand, within EX31_RS04935 at 113.998 kb on - strand, within EX31_RS04935 at 113.998 kb on - strand, within EX31_RS04935 at 113.998 kb on - strand, within EX31_RS04935 at 114.021 kb on - strand, within EX31_RS04935 at 114.021 kb on - strand, within EX31_RS04935 at 114.049 kb on + strand, within EX31_RS04935 at 114.049 kb on + strand, within EX31_RS04935 at 114.049 kb on + strand, within EX31_RS04935 at 114.050 kb on - strand, within EX31_RS04935 at 114.050 kb on - strand, within EX31_RS04935 at 114.050 kb on - strand, within EX31_RS04935 at 114.152 kb on + strand, within EX31_RS04935 at 114.152 kb on + strand, within EX31_RS04935 at 114.153 kb on - strand, within EX31_RS04935 at 114.153 kb on - strand, within EX31_RS04935
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 110,143 + EX31_RS04920 0.64 +0.5 110,143 + EX31_RS04920 0.64 +0.9 110,144 - EX31_RS04920 0.64 -0.5 110,302 - EX31_RS04920 0.87 +1.6 110,331 + +0.2 110,364 + -0.0 110,365 - -0.2 110,365 - -0.2 110,365 - +0.4 110,365 - -0.2 110,378 + -0.1 110,379 - +0.1 110,386 + +1.2 110,386 + -0.7 110,387 - -0.7 110,400 + +1.1 110,400 + -0.9 110,400 + -1.3 110,401 - +0.3 110,445 + +0.0 110,445 + -1.1 110,445 + -0.5 110,446 - -0.3 110,446 - +0.8 110,446 - -0.1 110,458 + +0.9 110,458 + -0.1 110,459 - -1.7 110,459 - +0.1 110,459 - -0.4 110,463 + +1.5 110,471 + +2.3 110,485 + -0.8 110,486 - -2.4 110,494 + +1.2 110,495 - -1.5 110,612 + EX31_RS04925 0.22 -0.6 110,631 + EX31_RS04925 0.25 -1.2 110,632 - EX31_RS04925 0.25 +1.3 110,689 - EX31_RS04925 0.35 -1.8 110,700 - EX31_RS04925 0.37 -1.6 110,700 - EX31_RS04925 0.37 -0.2 110,700 - EX31_RS04925 0.37 +1.3 110,783 - EX31_RS04925 0.52 +0.0 110,853 + EX31_RS04925 0.64 +0.5 111,057 - -1.2 111,057 - -1.6 111,057 - +0.6 111,057 - +0.3 111,116 + +0.3 111,136 + -0.3 111,136 + +0.2 111,136 + +0.0 111,160 - +0.3 111,219 - -0.8 111,315 - +2.1 111,315 - +0.3 111,411 + EX31_RS04930 0.14 +0.4 111,411 + EX31_RS04930 0.14 -0.3 111,411 + EX31_RS04930 0.14 +0.5 111,429 + EX31_RS04930 0.15 +0.3 111,429 + EX31_RS04930 0.15 +0.3 111,430 - EX31_RS04930 0.15 -0.4 111,430 - EX31_RS04930 0.15 +0.0 111,502 + EX31_RS04930 0.19 -1.8 111,503 - EX31_RS04930 0.19 -2.9 111,521 + EX31_RS04930 0.20 +0.3 111,521 + EX31_RS04930 0.20 -0.1 111,522 - EX31_RS04930 0.20 -0.7 111,538 + EX31_RS04930 0.20 -1.7 111,539 - EX31_RS04930 0.20 +1.1 111,578 + EX31_RS04930 0.22 -0.5 111,578 + EX31_RS04930 0.22 -0.4 111,579 - EX31_RS04930 0.22 +0.5 111,624 - EX31_RS04930 0.25 -0.1 111,624 - EX31_RS04930 0.25 +0.2 111,635 + EX31_RS04930 0.25 +0.8 111,636 - EX31_RS04930 0.25 -0.3 111,636 - EX31_RS04930 0.25 +0.3 111,641 + EX31_RS04930 0.25 +0.1 111,641 + EX31_RS04930 0.25 +0.9 111,641 + EX31_RS04930 0.25 +0.4 111,641 + EX31_RS04930 0.25 +1.2 111,641 + EX31_RS04930 0.25 +0.4 111,642 - EX31_RS04930 0.25 -1.1 111,642 - EX31_RS04930 0.25 +0.7 111,776 + EX31_RS04930 0.32 -0.4 111,777 - EX31_RS04930 0.32 -2.4 111,777 - EX31_RS04930 0.32 +0.2 111,777 - EX31_RS04930 0.32 -1.2 111,777 - EX31_RS04930 0.32 -0.2 111,777 - EX31_RS04930 0.32 +0.2 111,777 - EX31_RS04930 0.32 -0.0 111,777 - EX31_RS04930 0.32 -0.2 111,777 - EX31_RS04930 0.32 -0.5 111,889 + EX31_RS04930 0.37 +1.4 111,890 - EX31_RS04930 0.37 +0.6 112,007 + EX31_RS04930 0.43 -0.2 112,007 + EX31_RS04930 0.43 -1.2 112,008 - EX31_RS04930 0.43 +0.0 112,110 - EX31_RS04930 0.48 -1.4 112,110 - EX31_RS04930 0.48 +0.3 112,155 - EX31_RS04930 0.50 -0.2 112,175 + EX31_RS04930 0.51 +0.8 112,220 + EX31_RS04930 0.53 +0.6 112,220 + EX31_RS04930 0.53 -2.1 112,220 + EX31_RS04930 0.53 +0.5 112,221 - EX31_RS04930 0.53 +0.8 112,255 + EX31_RS04930 0.55 -0.2 112,278 + EX31_RS04930 0.56 -0.5 112,278 + EX31_RS04930 0.56 +0.4 112,278 + EX31_RS04930 0.56 +0.8 112,279 - EX31_RS04930 0.56 -0.3 112,279 - EX31_RS04930 0.56 -0.6 112,279 - EX31_RS04930 0.56 +0.0 112,279 - EX31_RS04930 0.56 +0.8 112,279 - EX31_RS04930 0.56 -1.0 112,279 - EX31_RS04930 0.56 -1.1 112,279 - EX31_RS04930 0.56 +1.0 112,353 + EX31_RS04930 0.60 +0.0 112,553 + EX31_RS04930 0.69 -0.3 112,553 + EX31_RS04930 0.69 +0.0 112,553 + EX31_RS04930 0.69 +0.9 112,553 + EX31_RS04930 0.69 +0.2 112,553 + EX31_RS04930 0.69 +1.7 112,553 + EX31_RS04930 0.69 -0.2 112,553 + EX31_RS04930 0.69 -1.0 112,553 + EX31_RS04930 0.69 +0.5 112,553 + EX31_RS04930 0.69 -0.7 112,553 + EX31_RS04930 0.69 -0.5 112,554 - EX31_RS04930 0.69 +0.4 112,554 - EX31_RS04930 0.69 -0.5 112,554 - EX31_RS04930 0.69 +1.3 112,590 - EX31_RS04930 0.71 +0.6 112,590 - EX31_RS04930 0.71 -0.3 112,620 - EX31_RS04930 0.72 +0.1 112,620 - EX31_RS04930 0.72 +0.7 112,631 - EX31_RS04930 0.73 -0.9 112,720 - EX31_RS04930 0.77 -0.8 112,737 + EX31_RS04930 0.78 +0.7 112,737 + EX31_RS04930 0.78 +2.8 112,738 - EX31_RS04930 0.78 +1.3 112,739 + EX31_RS04930 0.78 -2.6 112,739 + EX31_RS04930 0.78 -0.4 112,740 - EX31_RS04930 0.78 +0.5 112,740 - EX31_RS04930 0.78 -0.1 112,796 + EX31_RS04930 0.81 +1.4 112,796 + EX31_RS04930 0.81 +0.0 112,797 - EX31_RS04930 0.81 +0.0 112,840 - EX31_RS04930 0.83 -0.8 113,010 + +1.7 113,010 + +0.3 113,011 - -0.9 113,127 + -0.4 113,127 + -1.0 113,127 + -0.9 113,128 - +0.1 113,128 - -0.6 113,128 - +0.3 113,128 - +0.1 113,143 + -2.1 113,143 + +1.6 113,144 - +2.1 113,144 - -2.2 113,144 - -0.2 113,201 - +0.0 113,201 - +0.2 113,201 - +0.1 113,231 - +0.0 113,265 + -0.4 113,266 - +0.2 113,266 - +0.5 113,288 + -0.4 113,350 + +1.0 113,350 + +0.2 113,350 + -0.5 113,351 - +2.9 113,351 - +1.5 113,351 - +0.1 113,377 + -0.4 113,378 - +0.6 113,444 - EX31_RS04935 0.10 +0.4 113,515 + EX31_RS04935 0.13 -0.2 113,516 - EX31_RS04935 0.13 +0.1 113,564 + EX31_RS04935 0.15 -0.7 113,564 + EX31_RS04935 0.15 +0.6 113,564 + EX31_RS04935 0.15 -0.2 113,564 + EX31_RS04935 0.15 +0.4 113,565 - EX31_RS04935 0.15 +0.1 113,565 - EX31_RS04935 0.15 -0.5 113,658 - EX31_RS04935 0.19 -0.3 113,749 + EX31_RS04935 0.23 +0.4 113,749 + EX31_RS04935 0.23 +0.7 113,830 + EX31_RS04935 0.26 +0.5 113,831 - EX31_RS04935 0.26 +0.6 113,831 - EX31_RS04935 0.26 +1.0 113,831 - EX31_RS04935 0.26 -0.2 113,834 + EX31_RS04935 0.26 +0.7 113,835 - EX31_RS04935 0.26 -1.1 113,851 + EX31_RS04935 0.27 +0.3 113,851 + EX31_RS04935 0.27 +0.6 113,851 + EX31_RS04935 0.27 -1.5 113,851 + EX31_RS04935 0.27 -0.2 113,851 + EX31_RS04935 0.27 -0.8 113,852 - EX31_RS04935 0.27 -1.5 113,854 + EX31_RS04935 0.27 +0.6 113,945 + EX31_RS04935 0.31 +1.2 113,945 + EX31_RS04935 0.31 -1.2 113,945 + EX31_RS04935 0.31 +0.3 113,945 + EX31_RS04935 0.31 +1.1 113,945 + EX31_RS04935 0.31 -0.3 113,946 - EX31_RS04935 0.31 -0.0 113,974 + EX31_RS04935 0.32 +1.4 113,974 + EX31_RS04935 0.32 -0.7 113,974 + EX31_RS04935 0.32 +0.5 113,975 - EX31_RS04935 0.32 -0.2 113,975 - EX31_RS04935 0.32 -0.9 113,975 - EX31_RS04935 0.32 +2.3 113,975 - EX31_RS04935 0.32 +0.3 113,975 - EX31_RS04935 0.32 -1.1 113,975 - EX31_RS04935 0.32 -0.2 113,990 + EX31_RS04935 0.33 +0.6 113,991 - EX31_RS04935 0.33 +0.7 113,997 + EX31_RS04935 0.33 +0.1 113,997 + EX31_RS04935 0.33 +0.6 113,997 + EX31_RS04935 0.33 -0.1 113,997 + EX31_RS04935 0.33 -0.4 113,997 + EX31_RS04935 0.33 -1.8 113,997 + EX31_RS04935 0.33 -1.0 113,997 + EX31_RS04935 0.33 +1.3 113,997 + EX31_RS04935 0.33 +1.3 113,997 + EX31_RS04935 0.33 +0.7 113,998 - EX31_RS04935 0.33 +0.9 113,998 - EX31_RS04935 0.33 -0.1 113,998 - EX31_RS04935 0.33 -0.2 113,998 - EX31_RS04935 0.33 -0.2 114,021 - EX31_RS04935 0.34 +0.6 114,021 - EX31_RS04935 0.34 -0.8 114,049 + EX31_RS04935 0.35 +0.1 114,049 + EX31_RS04935 0.35 -0.1 114,049 + EX31_RS04935 0.35 +0.3 114,050 - EX31_RS04935 0.35 +0.4 114,050 - EX31_RS04935 0.35 +0.6 114,050 - EX31_RS04935 0.35 +0.8 114,152 + EX31_RS04935 0.39 +1.9 114,152 + EX31_RS04935 0.39 -1.2 114,153 - EX31_RS04935 0.40 +0.8 114,153 - EX31_RS04935 0.40 -0.2
Or see this region's nucleotide sequence