Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02315 and EX31_RS02320 are separated by 114 nucleotides EX31_RS02320 and EX31_RS02325 are separated by 27 nucleotides EX31_RS02325 and EX31_RS02330 are separated by 171 nucleotides
EX31_RS02315: EX31_RS02315 - MFS transporter, at 500,171 to 501,559
_RS02315
EX31_RS02320: EX31_RS02320 - LysR family transcriptional regulator, at 501,674 to 502,588
_RS02320
EX31_RS02325: EX31_RS02325 - GNAT family N-acetyltransferase, at 502,616 to 503,158
_RS02325
EX31_RS02330: EX31_RS02330 - hypothetical protein, at 503,330 to 503,569
_RS02330
Position (kb) 501
502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 500.712 kb on + strand, within EX31_RS02315 at 500.755 kb on + strand, within EX31_RS02315 at 500.755 kb on + strand, within EX31_RS02315 at 500.755 kb on + strand, within EX31_RS02315 at 500.756 kb on - strand, within EX31_RS02315 at 500.756 kb on - strand, within EX31_RS02315 at 500.764 kb on - strand, within EX31_RS02315 at 500.764 kb on - strand, within EX31_RS02315 at 500.799 kb on - strand, within EX31_RS02315 at 500.799 kb on - strand, within EX31_RS02315 at 500.846 kb on + strand, within EX31_RS02315 at 501.193 kb on - strand, within EX31_RS02315 at 501.201 kb on + strand, within EX31_RS02315 at 501.201 kb on + strand, within EX31_RS02315 at 501.201 kb on + strand, within EX31_RS02315 at 501.201 kb on + strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.202 kb on - strand, within EX31_RS02315 at 501.316 kb on + strand, within EX31_RS02315 at 501.388 kb on + strand, within EX31_RS02315 at 501.409 kb on + strand, within EX31_RS02315 at 501.409 kb on + strand, within EX31_RS02315 at 501.409 kb on + strand, within EX31_RS02315 at 501.409 kb on + strand, within EX31_RS02315 at 501.409 kb on + strand, within EX31_RS02315 at 501.409 kb on + strand, within EX31_RS02315 at 501.410 kb on - strand, within EX31_RS02315 at 501.528 kb on + strand at 501.528 kb on + strand at 501.528 kb on + strand at 501.529 kb on - strand at 501.529 kb on - strand at 501.529 kb on - strand at 501.529 kb on - strand at 501.529 kb on - strand at 501.563 kb on + strand at 501.563 kb on + strand at 501.563 kb on + strand at 501.563 kb on + strand at 501.563 kb on + strand at 501.564 kb on - strand at 501.564 kb on - strand at 501.564 kb on - strand at 501.564 kb on - strand at 501.564 kb on - strand at 501.564 kb on - strand at 501.595 kb on + strand at 501.596 kb on - strand at 501.779 kb on - strand, within EX31_RS02320 at 502.126 kb on + strand, within EX31_RS02320 at 502.127 kb on - strand, within EX31_RS02320 at 502.210 kb on + strand, within EX31_RS02320 at 502.267 kb on + strand, within EX31_RS02320 at 502.267 kb on + strand, within EX31_RS02320 at 502.267 kb on + strand, within EX31_RS02320 at 502.267 kb on + strand, within EX31_RS02320 at 502.267 kb on + strand, within EX31_RS02320 at 502.267 kb on + strand, within EX31_RS02320 at 502.268 kb on - strand, within EX31_RS02320 at 502.268 kb on - strand, within EX31_RS02320 at 502.268 kb on - strand, within EX31_RS02320 at 502.493 kb on + strand, within EX31_RS02320 at 502.499 kb on - strand at 502.512 kb on + strand at 502.513 kb on - strand at 502.579 kb on + strand at 502.580 kb on - strand at 502.586 kb on + strand at 502.586 kb on + strand at 502.586 kb on + strand at 502.587 kb on - strand at 502.616 kb on - strand at 502.623 kb on + strand at 502.623 kb on + strand at 502.623 kb on + strand at 502.624 kb on - strand at 502.667 kb on - strand at 502.677 kb on + strand, within EX31_RS02325 at 502.688 kb on + strand, within EX31_RS02325 at 502.688 kb on + strand, within EX31_RS02325 at 503.105 kb on + strand at 503.105 kb on + strand at 503.105 kb on + strand at 503.161 kb on + strand at 503.162 kb on - strand at 503.251 kb on - strand at 503.270 kb on - strand at 503.271 kb on + strand at 503.277 kb on + strand at 503.298 kb on + strand at 503.298 kb on + strand at 503.298 kb on + strand at 503.310 kb on + strand at 503.310 kb on + strand at 503.310 kb on + strand at 503.310 kb on + strand at 503.310 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.319 kb on - strand at 503.319 kb on - strand at 503.326 kb on - strand at 503.330 kb on - strand at 503.379 kb on + strand, within EX31_RS02330 at 503.381 kb on + strand, within EX31_RS02330 at 503.381 kb on + strand, within EX31_RS02330 at 503.381 kb on + strand, within EX31_RS02330 at 503.382 kb on - strand, within EX31_RS02330 at 503.469 kb on + strand, within EX31_RS02330 at 503.469 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.531 kb on - strand, within EX31_RS02330 at 503.539 kb on + strand, within EX31_RS02330 at 503.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 500,712 + EX31_RS02315 0.39 -1.1 500,755 + EX31_RS02315 0.42 +0.4 500,755 + EX31_RS02315 0.42 +0.0 500,755 + EX31_RS02315 0.42 -0.1 500,756 - EX31_RS02315 0.42 -0.9 500,756 - EX31_RS02315 0.42 -1.0 500,764 - EX31_RS02315 0.43 +0.3 500,764 - EX31_RS02315 0.43 -0.7 500,799 - EX31_RS02315 0.45 -0.1 500,799 - EX31_RS02315 0.45 -2.6 500,846 + EX31_RS02315 0.49 -0.7 501,193 - EX31_RS02315 0.74 -1.0 501,201 + EX31_RS02315 0.74 -0.3 501,201 + EX31_RS02315 0.74 -0.9 501,201 + EX31_RS02315 0.74 +0.3 501,201 + EX31_RS02315 0.74 +1.7 501,202 - EX31_RS02315 0.74 +0.0 501,202 - EX31_RS02315 0.74 -1.6 501,202 - EX31_RS02315 0.74 +0.1 501,202 - EX31_RS02315 0.74 +0.7 501,202 - EX31_RS02315 0.74 -0.0 501,202 - EX31_RS02315 0.74 +0.9 501,202 - EX31_RS02315 0.74 -1.7 501,202 - EX31_RS02315 0.74 +0.2 501,202 - EX31_RS02315 0.74 +3.2 501,202 - EX31_RS02315 0.74 +1.3 501,202 - EX31_RS02315 0.74 -0.7 501,202 - EX31_RS02315 0.74 -0.3 501,202 - EX31_RS02315 0.74 -1.7 501,316 + EX31_RS02315 0.82 -0.7 501,388 + EX31_RS02315 0.88 +1.0 501,409 + EX31_RS02315 0.89 -0.1 501,409 + EX31_RS02315 0.89 -0.1 501,409 + EX31_RS02315 0.89 +0.9 501,409 + EX31_RS02315 0.89 -1.0 501,409 + EX31_RS02315 0.89 +0.9 501,409 + EX31_RS02315 0.89 +0.4 501,410 - EX31_RS02315 0.89 +0.3 501,528 + -0.1 501,528 + +0.1 501,528 + +1.5 501,529 - +0.0 501,529 - -0.1 501,529 - -0.4 501,529 - -3.5 501,529 - -1.3 501,563 + +0.6 501,563 + -0.7 501,563 + +0.7 501,563 + -0.9 501,563 + +1.9 501,564 - +0.9 501,564 - +0.2 501,564 - -2.1 501,564 - +0.2 501,564 - -0.4 501,564 - +0.9 501,595 + -1.7 501,596 - +0.0 501,779 - EX31_RS02320 0.11 -1.5 502,126 + EX31_RS02320 0.49 -2.0 502,127 - EX31_RS02320 0.50 -0.7 502,210 + EX31_RS02320 0.59 +0.5 502,267 + EX31_RS02320 0.65 -0.1 502,267 + EX31_RS02320 0.65 -0.7 502,267 + EX31_RS02320 0.65 -1.1 502,267 + EX31_RS02320 0.65 +2.4 502,267 + EX31_RS02320 0.65 +0.1 502,267 + EX31_RS02320 0.65 -0.5 502,268 - EX31_RS02320 0.65 +1.7 502,268 - EX31_RS02320 0.65 +0.3 502,268 - EX31_RS02320 0.65 +1.9 502,493 + EX31_RS02320 0.90 +0.4 502,499 - +0.6 502,512 + +0.4 502,513 - +1.2 502,579 + +2.2 502,580 - -2.5 502,586 + +0.4 502,586 + +1.9 502,586 + +0.1 502,587 - +0.1 502,616 - +0.9 502,623 + +0.5 502,623 + +0.9 502,623 + +0.9 502,624 - -0.7 502,667 - +0.3 502,677 + EX31_RS02325 0.11 -1.3 502,688 + EX31_RS02325 0.13 +0.4 502,688 + EX31_RS02325 0.13 -0.1 503,105 + -1.1 503,105 + +1.7 503,105 + +2.2 503,161 + -0.8 503,162 - -0.7 503,251 - +2.3 503,270 - +1.3 503,271 + +0.9 503,277 + +0.7 503,298 + +0.5 503,298 + +0.7 503,298 + -0.2 503,310 + -0.7 503,310 + -0.7 503,310 + +0.3 503,310 + -0.4 503,310 + -1.7 503,318 + +0.1 503,318 + -0.3 503,318 + -0.1 503,318 + -1.1 503,318 + -1.1 503,319 - -0.3 503,319 - +0.9 503,326 - -0.3 503,330 - +0.0 503,379 + EX31_RS02330 0.20 +0.3 503,381 + EX31_RS02330 0.21 +0.3 503,381 + EX31_RS02330 0.21 -0.7 503,381 + EX31_RS02330 0.21 -0.7 503,382 - EX31_RS02330 0.22 -0.6 503,469 + EX31_RS02330 0.58 +1.4 503,469 + EX31_RS02330 0.58 +0.5 503,528 + EX31_RS02330 0.82 -0.5 503,528 + EX31_RS02330 0.82 +0.9 503,528 + EX31_RS02330 0.82 -0.3 503,528 + EX31_RS02330 0.82 +0.5 503,528 + EX31_RS02330 0.82 -0.3 503,528 + EX31_RS02330 0.82 -1.0 503,530 + EX31_RS02330 0.83 +0.7 503,530 + EX31_RS02330 0.83 -0.1 503,530 + EX31_RS02330 0.83 -0.6 503,530 + EX31_RS02330 0.83 -0.1 503,530 + EX31_RS02330 0.83 +1.1 503,531 - EX31_RS02330 0.84 -0.1 503,539 + EX31_RS02330 0.87 -1.3 503,581 + -1.0
Or see this region's nucleotide sequence