Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25165

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS25160 and CA265_RS25165 are separated by 1 nucleotidesCA265_RS25165 and CA265_RS25170 are separated by 83 nucleotidesCA265_RS25170 and CA265_RS25175 are separated by 125 nucleotides CA265_RS25160: CA265_RS25160 - glycosyl transferase family 2, at 6,125,941 to 6,126,321 _RS25160 CA265_RS25165: CA265_RS25165 - glycosyl transferase, at 6,126,323 to 6,127,957 _RS25165 CA265_RS25170: CA265_RS25170 - pyridoxine 5'-phosphate synthase, at 6,128,041 to 6,128,757 _RS25170 CA265_RS25175: CA265_RS25175 - EamA family transporter, at 6,128,883 to 6,129,788 _RS25175 Position (kb) 6126 6127 6128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6125.537 kb on + strandat 6125.538 kb on - strandat 6125.538 kb on - strandat 6125.586 kb on + strandat 6125.587 kb on - strandat 6125.673 kb on - strandat 6125.689 kb on + strandat 6125.727 kb on + strandat 6125.759 kb on - strandat 6125.759 kb on - strandat 6125.763 kb on - strandat 6125.818 kb on + strandat 6125.890 kb on + strandat 6125.891 kb on - strandat 6125.907 kb on - strandat 6125.952 kb on + strandat 6125.953 kb on - strandat 6125.993 kb on - strand, within CA265_RS25160at 6126.054 kb on - strand, within CA265_RS25160at 6126.129 kb on + strand, within CA265_RS25160at 6126.129 kb on + strand, within CA265_RS25160at 6126.171 kb on + strand, within CA265_RS25160at 6126.212 kb on + strand, within CA265_RS25160at 6126.212 kb on + strand, within CA265_RS25160at 6126.213 kb on - strand, within CA265_RS25160at 6126.213 kb on - strand, within CA265_RS25160at 6126.330 kb on - strandat 6126.445 kb on - strandat 6126.483 kb on + strandat 6126.589 kb on - strand, within CA265_RS25165at 6126.596 kb on + strand, within CA265_RS25165at 6126.722 kb on + strand, within CA265_RS25165at 6126.723 kb on - strand, within CA265_RS25165at 6126.734 kb on + strand, within CA265_RS25165at 6126.734 kb on + strand, within CA265_RS25165at 6126.735 kb on - strand, within CA265_RS25165at 6126.737 kb on - strand, within CA265_RS25165at 6126.737 kb on - strand, within CA265_RS25165at 6126.746 kb on + strand, within CA265_RS25165at 6126.752 kb on + strand, within CA265_RS25165at 6126.752 kb on + strand, within CA265_RS25165at 6126.752 kb on + strand, within CA265_RS25165at 6126.752 kb on + strand, within CA265_RS25165at 6126.753 kb on - strand, within CA265_RS25165at 6126.802 kb on + strand, within CA265_RS25165at 6126.803 kb on - strand, within CA265_RS25165at 6126.804 kb on + strand, within CA265_RS25165at 6126.805 kb on - strand, within CA265_RS25165at 6126.805 kb on - strand, within CA265_RS25165at 6126.857 kb on + strand, within CA265_RS25165at 6126.858 kb on - strand, within CA265_RS25165at 6126.869 kb on + strand, within CA265_RS25165at 6126.884 kb on - strand, within CA265_RS25165at 6126.927 kb on + strand, within CA265_RS25165at 6126.970 kb on + strand, within CA265_RS25165at 6126.971 kb on - strand, within CA265_RS25165at 6126.972 kb on + strand, within CA265_RS25165at 6127.138 kb on + strand, within CA265_RS25165at 6127.139 kb on - strand, within CA265_RS25165at 6127.139 kb on - strand, within CA265_RS25165at 6127.139 kb on - strand, within CA265_RS25165at 6127.141 kb on + strand, within CA265_RS25165at 6127.168 kb on + strand, within CA265_RS25165at 6127.169 kb on - strand, within CA265_RS25165at 6127.176 kb on - strand, within CA265_RS25165at 6127.257 kb on - strand, within CA265_RS25165at 6127.257 kb on - strand, within CA265_RS25165at 6127.286 kb on + strand, within CA265_RS25165at 6127.287 kb on - strand, within CA265_RS25165at 6127.287 kb on - strand, within CA265_RS25165at 6127.292 kb on + strand, within CA265_RS25165at 6127.292 kb on + strand, within CA265_RS25165at 6127.293 kb on - strand, within CA265_RS25165at 6127.331 kb on + strand, within CA265_RS25165at 6127.334 kb on - strand, within CA265_RS25165at 6127.385 kb on + strand, within CA265_RS25165at 6127.399 kb on + strand, within CA265_RS25165at 6127.400 kb on - strand, within CA265_RS25165at 6127.400 kb on - strand, within CA265_RS25165at 6127.430 kb on + strand, within CA265_RS25165at 6127.430 kb on + strand, within CA265_RS25165at 6127.430 kb on + strand, within CA265_RS25165at 6127.431 kb on - strand, within CA265_RS25165at 6127.444 kb on + strand, within CA265_RS25165at 6127.510 kb on - strand, within CA265_RS25165at 6127.518 kb on + strand, within CA265_RS25165at 6127.519 kb on - strand, within CA265_RS25165at 6127.519 kb on - strand, within CA265_RS25165at 6127.523 kb on - strand, within CA265_RS25165at 6127.548 kb on + strand, within CA265_RS25165at 6127.549 kb on - strand, within CA265_RS25165at 6127.549 kb on - strand, within CA265_RS25165at 6127.636 kb on + strand, within CA265_RS25165at 6127.637 kb on - strand, within CA265_RS25165at 6127.638 kb on + strand, within CA265_RS25165at 6127.638 kb on + strand, within CA265_RS25165at 6127.639 kb on - strand, within CA265_RS25165at 6127.639 kb on - strand, within CA265_RS25165at 6127.639 kb on - strand, within CA265_RS25165at 6127.659 kb on + strand, within CA265_RS25165at 6127.659 kb on + strand, within CA265_RS25165at 6127.800 kb on + strandat 6127.801 kb on - strandat 6127.804 kb on + strandat 6127.804 kb on + strandat 6127.875 kb on - strandat 6127.934 kb on + strandat 6127.972 kb on + strandat 6127.972 kb on + strandat 6128.030 kb on - strandat 6128.755 kb on + strandat 6128.816 kb on - strandat 6128.821 kb on - strandat 6128.880 kb on + strandat 6128.881 kb on - strandat 6128.882 kb on + strandat 6128.887 kb on + strandat 6128.939 kb on + strandat 6128.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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6,125,537 + +0.3
6,125,538 - -0.1
6,125,538 - -1.5
6,125,586 + +0.1
6,125,587 - +0.3
6,125,673 - +0.3
6,125,689 + -1.0
6,125,727 + +0.4
6,125,759 - -0.9
6,125,759 - -2.2
6,125,763 - +0.2
6,125,818 + +0.2
6,125,890 + -0.3
6,125,891 - -0.7
6,125,907 - -0.0
6,125,952 + +0.5
6,125,953 - -1.0
6,125,993 - CA265_RS25160 0.14 -0.8
6,126,054 - CA265_RS25160 0.30 +0.6
6,126,129 + CA265_RS25160 0.49 +1.7
6,126,129 + CA265_RS25160 0.49 -0.3
6,126,171 + CA265_RS25160 0.60 +0.5
6,126,212 + CA265_RS25160 0.71 +0.5
6,126,212 + CA265_RS25160 0.71 +0.9
6,126,213 - CA265_RS25160 0.71 +0.3
6,126,213 - CA265_RS25160 0.71 -0.5
6,126,330 - -0.4
6,126,445 - +0.4
6,126,483 + +0.2
6,126,589 - CA265_RS25165 0.16 -0.4
6,126,596 + CA265_RS25165 0.17 +0.0
6,126,722 + CA265_RS25165 0.24 +0.1
6,126,723 - CA265_RS25165 0.24 +0.6
6,126,734 + CA265_RS25165 0.25 +0.2
6,126,734 + CA265_RS25165 0.25 +0.6
6,126,735 - CA265_RS25165 0.25 -0.7
6,126,737 - CA265_RS25165 0.25 -0.5
6,126,737 - CA265_RS25165 0.25 +0.5
6,126,746 + CA265_RS25165 0.26 +0.6
6,126,752 + CA265_RS25165 0.26 +0.8
6,126,752 + CA265_RS25165 0.26 +0.3
6,126,752 + CA265_RS25165 0.26 +0.7
6,126,752 + CA265_RS25165 0.26 -0.2
6,126,753 - CA265_RS25165 0.26 -0.4
6,126,802 + CA265_RS25165 0.29 +1.1
6,126,803 - CA265_RS25165 0.29 -0.4
6,126,804 + CA265_RS25165 0.29 +0.9
6,126,805 - CA265_RS25165 0.29 +0.1
6,126,805 - CA265_RS25165 0.29 -0.4
6,126,857 + CA265_RS25165 0.33 +3.0
6,126,858 - CA265_RS25165 0.33 -0.2
6,126,869 + CA265_RS25165 0.33 +0.3
6,126,884 - CA265_RS25165 0.34 +0.8
6,126,927 + CA265_RS25165 0.37 -0.0
6,126,970 + CA265_RS25165 0.40 +0.6
6,126,971 - CA265_RS25165 0.40 -0.6
6,126,972 + CA265_RS25165 0.40 +0.5
6,127,138 + CA265_RS25165 0.50 -0.1
6,127,139 - CA265_RS25165 0.50 -0.0
6,127,139 - CA265_RS25165 0.50 +0.3
6,127,139 - CA265_RS25165 0.50 +1.2
6,127,141 + CA265_RS25165 0.50 +0.5
6,127,168 + CA265_RS25165 0.52 +0.3
6,127,169 - CA265_RS25165 0.52 +0.9
6,127,176 - CA265_RS25165 0.52 +0.7
6,127,257 - CA265_RS25165 0.57 -0.2
6,127,257 - CA265_RS25165 0.57 +0.6
6,127,286 + CA265_RS25165 0.59 +1.1
6,127,287 - CA265_RS25165 0.59 +0.5
6,127,287 - CA265_RS25165 0.59 -0.0
6,127,292 + CA265_RS25165 0.59 +0.2
6,127,292 + CA265_RS25165 0.59 +1.1
6,127,293 - CA265_RS25165 0.59 +0.4
6,127,331 + CA265_RS25165 0.62 +1.5
6,127,334 - CA265_RS25165 0.62 +0.2
6,127,385 + CA265_RS25165 0.65 +1.3
6,127,399 + CA265_RS25165 0.66 +0.1
6,127,400 - CA265_RS25165 0.66 +0.8
6,127,400 - CA265_RS25165 0.66 +0.8
6,127,430 + CA265_RS25165 0.68 +1.5
6,127,430 + CA265_RS25165 0.68 -0.5
6,127,430 + CA265_RS25165 0.68 +0.3
6,127,431 - CA265_RS25165 0.68 +0.2
6,127,444 + CA265_RS25165 0.69 +0.7
6,127,510 - CA265_RS25165 0.73 +0.8
6,127,518 + CA265_RS25165 0.73 -0.5
6,127,519 - CA265_RS25165 0.73 +0.1
6,127,519 - CA265_RS25165 0.73 -1.2
6,127,523 - CA265_RS25165 0.73 +0.2
6,127,548 + CA265_RS25165 0.75 +0.9
6,127,549 - CA265_RS25165 0.75 -0.4
6,127,549 - CA265_RS25165 0.75 -0.1
6,127,636 + CA265_RS25165 0.80 +1.2
6,127,637 - CA265_RS25165 0.80 +0.9
6,127,638 + CA265_RS25165 0.80 +0.1
6,127,638 + CA265_RS25165 0.80 +1.1
6,127,639 - CA265_RS25165 0.80 +0.0
6,127,639 - CA265_RS25165 0.80 -2.1
6,127,639 - CA265_RS25165 0.80 -0.1
6,127,659 + CA265_RS25165 0.82 +0.8
6,127,659 + CA265_RS25165 0.82 +1.0
6,127,800 + +1.0
6,127,801 - -0.5
6,127,804 + +0.9
6,127,804 + -0.4
6,127,875 - +0.2
6,127,934 + +1.4
6,127,972 + +0.3
6,127,972 + +0.3
6,128,030 - -2.9
6,128,755 + +0.4
6,128,816 - -0.4
6,128,821 - -0.0
6,128,880 + +0.2
6,128,881 - -0.3
6,128,882 + -0.4
6,128,887 + -0.6
6,128,939 + +0.9
6,128,949 - -2.9

Or see this region's nucleotide sequence