Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20270 and CA265_RS20275 are separated by 40 nucleotides CA265_RS20275 and CA265_RS20280 are separated by 1 nucleotides CA265_RS20280 and CA265_RS20285 are separated by 64 nucleotides CA265_RS20285 and CA265_RS20290 are separated by 9 nucleotides
CA265_RS20270: CA265_RS20270 - methionine--tRNA ligase, at 5,005,669 to 5,007,777
_RS20270
CA265_RS20275: CA265_RS20275 - LD-carboxypeptidase, at 5,007,818 to 5,008,717
_RS20275
CA265_RS20280: CA265_RS20280 - DoxX family protein, at 5,008,719 to 5,009,126
_RS20280
CA265_RS20285: CA265_RS20285 - hypothetical protein, at 5,009,191 to 5,009,640
_RS20285
CA265_RS20290: CA265_RS20290 - hypothetical protein, at 5,009,650 to 5,011,125
_RS20290
Position (kb) 5007
5008
5009 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5007.823 kb on + strand at 5007.853 kb on + strand at 5007.909 kb on + strand, within CA265_RS20275 at 5007.958 kb on - strand, within CA265_RS20275 at 5007.960 kb on - strand, within CA265_RS20275 at 5008.037 kb on - strand, within CA265_RS20275 at 5008.049 kb on - strand, within CA265_RS20275 at 5008.084 kb on + strand, within CA265_RS20275 at 5008.085 kb on - strand, within CA265_RS20275 at 5008.171 kb on - strand, within CA265_RS20275 at 5008.171 kb on - strand, within CA265_RS20275 at 5008.198 kb on - strand, within CA265_RS20275 at 5008.287 kb on - strand, within CA265_RS20275 at 5008.287 kb on - strand, within CA265_RS20275 at 5008.287 kb on - strand, within CA265_RS20275 at 5008.349 kb on - strand, within CA265_RS20275 at 5008.443 kb on - strand, within CA265_RS20275 at 5008.449 kb on + strand, within CA265_RS20275 at 5008.449 kb on + strand, within CA265_RS20275 at 5008.652 kb on - strand at 5008.684 kb on - strand at 5008.713 kb on + strand at 5008.754 kb on + strand at 5008.771 kb on + strand, within CA265_RS20280 at 5008.797 kb on - strand, within CA265_RS20280 at 5009.036 kb on - strand, within CA265_RS20280 at 5009.062 kb on + strand, within CA265_RS20280 at 5009.067 kb on - strand, within CA265_RS20280 at 5009.106 kb on + strand at 5009.106 kb on + strand at 5009.107 kb on - strand at 5009.109 kb on - strand at 5009.118 kb on - strand at 5009.130 kb on - strand at 5009.202 kb on + strand at 5009.203 kb on - strand at 5009.203 kb on - strand at 5009.203 kb on - strand at 5009.205 kb on + strand at 5009.337 kb on + strand, within CA265_RS20285 at 5009.349 kb on + strand, within CA265_RS20285 at 5009.359 kb on + strand, within CA265_RS20285 at 5009.364 kb on + strand, within CA265_RS20285 at 5009.383 kb on + strand, within CA265_RS20285 at 5009.399 kb on - strand, within CA265_RS20285 at 5009.404 kb on - strand, within CA265_RS20285 at 5009.406 kb on + strand, within CA265_RS20285 at 5009.407 kb on - strand, within CA265_RS20285 at 5009.435 kb on + strand, within CA265_RS20285 at 5009.439 kb on + strand, within CA265_RS20285 at 5009.439 kb on + strand, within CA265_RS20285 at 5009.439 kb on + strand, within CA265_RS20285 at 5009.452 kb on + strand, within CA265_RS20285 at 5009.481 kb on + strand, within CA265_RS20285 at 5009.482 kb on - strand, within CA265_RS20285 at 5009.554 kb on - strand, within CA265_RS20285 at 5009.640 kb on + strand at 5009.666 kb on - strand at 5009.704 kb on - strand at 5009.709 kb on + strand at 5009.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 5,007,823 + +0.8 5,007,853 + +2.2 5,007,909 + CA265_RS20275 0.10 +0.5 5,007,958 - CA265_RS20275 0.16 +0.3 5,007,960 - CA265_RS20275 0.16 +0.7 5,008,037 - CA265_RS20275 0.24 +0.5 5,008,049 - CA265_RS20275 0.26 -0.1 5,008,084 + CA265_RS20275 0.30 +0.4 5,008,085 - CA265_RS20275 0.30 +1.0 5,008,171 - CA265_RS20275 0.39 -0.1 5,008,171 - CA265_RS20275 0.39 +0.2 5,008,198 - CA265_RS20275 0.42 +0.6 5,008,287 - CA265_RS20275 0.52 +0.7 5,008,287 - CA265_RS20275 0.52 +0.6 5,008,287 - CA265_RS20275 0.52 +1.4 5,008,349 - CA265_RS20275 0.59 +0.3 5,008,443 - CA265_RS20275 0.69 +0.4 5,008,449 + CA265_RS20275 0.70 +1.6 5,008,449 + CA265_RS20275 0.70 +0.4 5,008,652 - +0.9 5,008,684 - +1.1 5,008,713 + -0.2 5,008,754 + -0.2 5,008,771 + CA265_RS20280 0.13 -0.5 5,008,797 - CA265_RS20280 0.19 -0.0 5,009,036 - CA265_RS20280 0.78 +0.0 5,009,062 + CA265_RS20280 0.84 -1.0 5,009,067 - CA265_RS20280 0.85 +0.5 5,009,106 + -0.2 5,009,106 + -1.8 5,009,107 - +0.5 5,009,109 - -0.2 5,009,118 - -0.3 5,009,130 - -0.0 5,009,202 + -1.3 5,009,203 - +0.3 5,009,203 - +0.0 5,009,203 - -0.6 5,009,205 + +0.5 5,009,337 + CA265_RS20285 0.32 +0.6 5,009,349 + CA265_RS20285 0.35 +0.3 5,009,359 + CA265_RS20285 0.37 +0.6 5,009,364 + CA265_RS20285 0.38 +0.4 5,009,383 + CA265_RS20285 0.43 +0.7 5,009,399 - CA265_RS20285 0.46 -1.1 5,009,404 - CA265_RS20285 0.47 -1.3 5,009,406 + CA265_RS20285 0.48 +0.3 5,009,407 - CA265_RS20285 0.48 -1.2 5,009,435 + CA265_RS20285 0.54 -0.4 5,009,439 + CA265_RS20285 0.55 -0.9 5,009,439 + CA265_RS20285 0.55 +0.9 5,009,439 + CA265_RS20285 0.55 +1.8 5,009,452 + CA265_RS20285 0.58 +0.2 5,009,481 + CA265_RS20285 0.64 +0.6 5,009,482 - CA265_RS20285 0.65 -1.0 5,009,554 - CA265_RS20285 0.81 +0.5 5,009,640 + -0.6 5,009,666 - +0.5 5,009,704 - -1.0 5,009,709 + -0.1 5,009,710 - -0.3
Or see this region's nucleotide sequence