Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13025

Experiment: CDM1 without Biotin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13020 and BBR_RS13025 are separated by 351 nucleotidesBBR_RS13025 and BBR_RS13030 are separated by 2 nucleotides BBR_RS13020: BBR_RS13020 - DNA polymerase III subunit epsilon, at 693,711 to 695,165 _RS13020 BBR_RS13025: BBR_RS13025 - peptide chain release factor 2, at 695,517 to 696,641 _RS13025 BBR_RS13030: BBR_RS13030 - cell division ATP-binding protein FtsE, at 696,644 to 697,840 _RS13030 Position (kb) 695 696 697Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 694.577 kb on - strand, within BBR_RS13020at 694.600 kb on + strand, within BBR_RS13020at 694.603 kb on - strand, within BBR_RS13020at 694.618 kb on + strand, within BBR_RS13020at 694.626 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020at 694.760 kb on + strand, within BBR_RS13020at 694.765 kb on + strand, within BBR_RS13020at 694.794 kb on - strand, within BBR_RS13020at 694.796 kb on + strand, within BBR_RS13020at 694.804 kb on - strand, within BBR_RS13020at 694.819 kb on + strand, within BBR_RS13020at 694.819 kb on - strand, within BBR_RS13020at 694.827 kb on - strand, within BBR_RS13020at 694.834 kb on + strand, within BBR_RS13020at 694.892 kb on + strand, within BBR_RS13020at 694.902 kb on - strand, within BBR_RS13020at 694.904 kb on + strand, within BBR_RS13020at 694.943 kb on - strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.960 kb on - strand, within BBR_RS13020at 694.969 kb on + strand, within BBR_RS13020at 694.971 kb on + strand, within BBR_RS13020at 694.977 kb on + strand, within BBR_RS13020at 694.977 kb on - strand, within BBR_RS13020at 694.978 kb on - strand, within BBR_RS13020at 694.988 kb on + strand, within BBR_RS13020at 694.988 kb on + strand, within BBR_RS13020at 694.996 kb on - strand, within BBR_RS13020at 694.996 kb on - strand, within BBR_RS13020at 694.996 kb on - strand, within BBR_RS13020at 695.026 kb on + strandat 695.094 kb on - strandat 695.113 kb on - strandat 695.156 kb on + strandat 695.156 kb on + strandat 695.166 kb on + strandat 695.171 kb on + strandat 695.191 kb on + strandat 695.201 kb on + strandat 695.201 kb on + strandat 695.201 kb on + strandat 695.201 kb on + strandat 695.266 kb on + strandat 695.279 kb on - strandat 695.393 kb on + strandat 695.404 kb on + strandat 695.428 kb on + strandat 695.458 kb on + strandat 696.612 kb on - strandat 696.792 kb on - strand, within BBR_RS13030at 696.853 kb on - strand, within BBR_RS13030at 696.885 kb on + strand, within BBR_RS13030at 697.152 kb on + strand, within BBR_RS13030at 697.165 kb on - strand, within BBR_RS13030at 697.436 kb on + strand, within BBR_RS13030at 697.539 kb on - strand, within BBR_RS13030at 697.610 kb on + strand, within BBR_RS13030at 697.618 kb on + strand, within BBR_RS13030

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Biotin
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694,577 - BBR_RS13020 0.60 -2.6
694,600 + BBR_RS13020 0.61 +0.9
694,603 - BBR_RS13020 0.61 -0.2
694,618 + BBR_RS13020 0.62 -0.4
694,626 - BBR_RS13020 0.63 -0.4
694,653 - BBR_RS13020 0.65 -0.6
694,653 - BBR_RS13020 0.65 +0.1
694,653 - BBR_RS13020 0.65 -1.6
694,760 + BBR_RS13020 0.72 +0.0
694,765 + BBR_RS13020 0.72 -0.6
694,794 - BBR_RS13020 0.74 -1.0
694,796 + BBR_RS13020 0.75 -0.4
694,804 - BBR_RS13020 0.75 +0.3
694,819 + BBR_RS13020 0.76 -0.0
694,819 - BBR_RS13020 0.76 -0.0
694,827 - BBR_RS13020 0.77 -1.8
694,834 + BBR_RS13020 0.77 -0.0
694,892 + BBR_RS13020 0.81 +1.7
694,902 - BBR_RS13020 0.82 +0.3
694,904 + BBR_RS13020 0.82 +0.0
694,943 - BBR_RS13020 0.85 -0.7
694,952 + BBR_RS13020 0.85 +0.5
694,952 + BBR_RS13020 0.85 -2.2
694,952 + BBR_RS13020 0.85 +0.3
694,952 + BBR_RS13020 0.85 -0.4
694,952 + BBR_RS13020 0.85 -0.8
694,952 + BBR_RS13020 0.85 +0.1
694,952 + BBR_RS13020 0.85 -0.1
694,960 - BBR_RS13020 0.86 -1.0
694,969 + BBR_RS13020 0.86 +0.7
694,971 + BBR_RS13020 0.87 +0.9
694,977 + BBR_RS13020 0.87 +1.3
694,977 - BBR_RS13020 0.87 -0.8
694,978 - BBR_RS13020 0.87 -0.5
694,988 + BBR_RS13020 0.88 -0.7
694,988 + BBR_RS13020 0.88 -0.9
694,996 - BBR_RS13020 0.88 -0.1
694,996 - BBR_RS13020 0.88 +0.4
694,996 - BBR_RS13020 0.88 +0.7
695,026 + +1.2
695,094 - +0.5
695,113 - -1.2
695,156 + +0.2
695,156 + +0.9
695,166 + -0.5
695,171 + -1.5
695,191 + -1.4
695,201 + -0.7
695,201 + +0.1
695,201 + +0.2
695,201 + -0.5
695,266 + +0.5
695,279 - -0.3
695,393 + +0.2
695,404 + +0.6
695,428 + -1.9
695,458 + -0.4
696,612 - -1.9
696,792 - BBR_RS13030 0.12 -3.8
696,853 - BBR_RS13030 0.17 -3.9
696,885 + BBR_RS13030 0.20 -3.1
697,152 + BBR_RS13030 0.42 -2.2
697,165 - BBR_RS13030 0.44 -4.0
697,436 + BBR_RS13030 0.66 -1.9
697,539 - BBR_RS13030 0.75 -4.2
697,610 + BBR_RS13030 0.81 -3.5
697,618 + BBR_RS13030 0.81 -2.9

Or see this region's nucleotide sequence