Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24725

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24720 and AO356_24725 are separated by 195 nucleotidesAO356_24725 and AO356_24730 are separated by 155 nucleotidesAO356_24730 and AO356_24735 are separated by 205 nucleotides AO356_24720: AO356_24720 - DNA-binding protein, at 5,593,410 to 5,594,843 _24720 AO356_24725: AO356_24725 - alkylhydroperoxidase, at 5,595,039 to 5,595,479 _24725 AO356_24730: AO356_24730 - hypothetical protein, at 5,595,635 to 5,595,961 _24730 AO356_24735: AO356_24735 - TonB-dependent outer membrane receptor, at 5,596,167 to 5,596,799 _24735 Position (kb) 5595 5596Strain fitness (log2 ratio) -1 0 1at 5594.089 kb on + strand, within AO356_24720at 5594.089 kb on + strand, within AO356_24720at 5594.090 kb on - strand, within AO356_24720at 5594.383 kb on + strand, within AO356_24720at 5594.385 kb on + strand, within AO356_24720at 5594.385 kb on + strand, within AO356_24720at 5594.386 kb on - strand, within AO356_24720at 5594.488 kb on + strand, within AO356_24720at 5594.621 kb on - strand, within AO356_24720at 5594.621 kb on - strand, within AO356_24720at 5594.621 kb on - strand, within AO356_24720at 5594.660 kb on - strand, within AO356_24720at 5594.674 kb on + strand, within AO356_24720at 5594.675 kb on - strand, within AO356_24720at 5594.675 kb on - strand, within AO356_24720at 5594.791 kb on + strandat 5594.917 kb on + strandat 5594.918 kb on - strandat 5594.918 kb on - strandat 5595.060 kb on + strandat 5595.060 kb on + strandat 5595.061 kb on - strandat 5595.061 kb on - strandat 5595.061 kb on - strandat 5595.246 kb on + strand, within AO356_24725at 5595.360 kb on + strand, within AO356_24725at 5595.360 kb on + strand, within AO356_24725at 5595.361 kb on - strand, within AO356_24725at 5595.688 kb on + strand, within AO356_24730at 5595.689 kb on - strand, within AO356_24730at 5595.841 kb on - strand, within AO356_24730at 5595.856 kb on - strand, within AO356_24730at 5596.014 kb on + strandat 5596.015 kb on - strandat 5596.036 kb on - strandat 5596.401 kb on + strand, within AO356_24735at 5596.402 kb on - strand, within AO356_24735

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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5,594,089 + AO356_24720 0.47 -0.4
5,594,089 + AO356_24720 0.47 +0.1
5,594,090 - AO356_24720 0.47 -1.1
5,594,383 + AO356_24720 0.68 +0.6
5,594,385 + AO356_24720 0.68 +1.7
5,594,385 + AO356_24720 0.68 -0.1
5,594,386 - AO356_24720 0.68 -0.3
5,594,488 + AO356_24720 0.75 +0.5
5,594,621 - AO356_24720 0.84 +0.7
5,594,621 - AO356_24720 0.84 -0.1
5,594,621 - AO356_24720 0.84 +1.1
5,594,660 - AO356_24720 0.87 -0.3
5,594,674 + AO356_24720 0.88 -0.3
5,594,675 - AO356_24720 0.88 +0.1
5,594,675 - AO356_24720 0.88 -0.8
5,594,791 + +0.3
5,594,917 + -0.5
5,594,918 - +0.0
5,594,918 - +0.7
5,595,060 + -0.4
5,595,060 + +1.4
5,595,061 - -0.2
5,595,061 - -0.4
5,595,061 - -0.7
5,595,246 + AO356_24725 0.47 -0.2
5,595,360 + AO356_24725 0.73 +0.8
5,595,360 + AO356_24725 0.73 +1.0
5,595,361 - AO356_24725 0.73 +0.2
5,595,688 + AO356_24730 0.16 -1.7
5,595,689 - AO356_24730 0.17 +0.3
5,595,841 - AO356_24730 0.63 -0.2
5,595,856 - AO356_24730 0.68 -0.7
5,596,014 + +0.8
5,596,015 - +0.4
5,596,036 - -0.4
5,596,401 + AO356_24735 0.37 +0.5
5,596,402 - AO356_24735 0.37 +0.0

Or see this region's nucleotide sequence