Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19715

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19710 and AO356_19715 overlap by 1 nucleotidesAO356_19715 and AO356_19720 are separated by 392 nucleotides AO356_19710: AO356_19710 - succinyl-CoA synthetase subunit beta, at 4,421,307 to 4,422,473 _19710 AO356_19715: AO356_19715 - succinyl-CoA synthetase subunit alpha, at 4,422,473 to 4,423,357 _19715 AO356_19720: AO356_19720 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,423,750 to 4,425,063 _19720 Position (kb) 4422 4423 4424Strain fitness (log2 ratio) -1 0 1at 4421.557 kb on - strand, within AO356_19710at 4421.632 kb on - strand, within AO356_19710at 4422.947 kb on + strand, within AO356_19715at 4423.355 kb on + strandat 4423.356 kb on - strandat 4423.356 kb on - strandat 4423.356 kb on - strandat 4423.425 kb on + strandat 4423.426 kb on - strandat 4423.529 kb on + strandat 4423.529 kb on + strandat 4423.529 kb on + strandat 4423.529 kb on + strandat 4423.530 kb on - strandat 4423.530 kb on - strandat 4423.530 kb on - strandat 4423.569 kb on - strandat 4423.581 kb on + strandat 4423.581 kb on + strandat 4423.581 kb on + strandat 4423.581 kb on + strandat 4423.581 kb on + strandat 4423.582 kb on - strandat 4423.582 kb on - strandat 4423.582 kb on - strandat 4423.613 kb on + strandat 4423.614 kb on - strandat 4423.719 kb on + strandat 4423.839 kb on + strandat 4424.014 kb on + strand, within AO356_19720at 4424.015 kb on - strand, within AO356_19720at 4424.015 kb on - strand, within AO356_19720at 4424.131 kb on + strand, within AO356_19720at 4424.131 kb on + strand, within AO356_19720at 4424.131 kb on + strand, within AO356_19720at 4424.209 kb on - strand, within AO356_19720at 4424.287 kb on + strand, within AO356_19720at 4424.288 kb on - strand, within AO356_19720at 4424.288 kb on - strand, within AO356_19720at 4424.327 kb on - strand, within AO356_19720at 4424.327 kb on - strand, within AO356_19720

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,421,557 - AO356_19710 0.21 +0.9
4,421,632 - AO356_19710 0.28 -0.1
4,422,947 + AO356_19715 0.54 +1.1
4,423,355 + +0.7
4,423,356 - +0.5
4,423,356 - +0.5
4,423,356 - +0.2
4,423,425 + -0.4
4,423,426 - -0.5
4,423,529 + +0.6
4,423,529 + +0.2
4,423,529 + -0.5
4,423,529 + -0.9
4,423,530 - -0.2
4,423,530 - +0.4
4,423,530 - +1.3
4,423,569 - +0.1
4,423,581 + +0.2
4,423,581 + +0.3
4,423,581 + -0.4
4,423,581 + -0.3
4,423,581 + -0.2
4,423,582 - +1.1
4,423,582 - +1.3
4,423,582 - +0.9
4,423,613 + -1.3
4,423,614 - +0.7
4,423,719 + -0.2
4,423,839 + +1.0
4,424,014 + AO356_19720 0.20 +0.1
4,424,015 - AO356_19720 0.20 +0.7
4,424,015 - AO356_19720 0.20 -0.0
4,424,131 + AO356_19720 0.29 +1.1
4,424,131 + AO356_19720 0.29 -0.1
4,424,131 + AO356_19720 0.29 +1.0
4,424,209 - AO356_19720 0.35 +0.4
4,424,287 + AO356_19720 0.41 -0.3
4,424,288 - AO356_19720 0.41 +0.8
4,424,288 - AO356_19720 0.41 -0.1
4,424,327 - AO356_19720 0.44 +1.4
4,424,327 - AO356_19720 0.44 -0.1

Or see this region's nucleotide sequence