Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17810

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17810 and AO356_17815 are separated by 452 nucleotides AO356_17810: AO356_17810 - fumarate hydratase, at 4,018,060 to 4,019,583 _17810 AO356_17815: AO356_17815 - hypothetical protein, at 4,020,036 to 4,021,142 _17815 Position (kb) 4018 4019 4020Strain fitness (log2 ratio) -2 -1 0 1at 4017.109 kb on - strandat 4017.109 kb on - strandat 4017.109 kb on - strandat 4017.967 kb on + strandat 4017.968 kb on - strandat 4017.968 kb on - strandat 4017.968 kb on - strandat 4017.970 kb on + strandat 4017.970 kb on + strandat 4017.970 kb on + strandat 4017.970 kb on + strandat 4017.970 kb on + strandat 4017.971 kb on - strandat 4017.971 kb on - strandat 4017.971 kb on - strandat 4017.971 kb on - strandat 4017.971 kb on - strandat 4017.971 kb on - strandat 4017.976 kb on + strandat 4017.976 kb on + strandat 4017.976 kb on + strandat 4017.976 kb on + strandat 4017.976 kb on + strandat 4017.976 kb on + strandat 4017.976 kb on + strandat 4017.976 kb on + strandat 4017.976 kb on + strandat 4017.977 kb on - strandat 4017.977 kb on - strandat 4017.977 kb on - strandat 4017.977 kb on - strandat 4017.977 kb on - strandat 4017.977 kb on - strandat 4017.977 kb on - strandat 4017.983 kb on - strandat 4018.062 kb on - strandat 4018.062 kb on - strandat 4019.519 kb on + strandat 4019.620 kb on - strandat 4019.620 kb on - strandat 4019.664 kb on + strandat 4019.665 kb on - strandat 4019.665 kb on - strandat 4019.665 kb on - strandat 4019.697 kb on - strandat 4019.713 kb on - strandat 4019.713 kb on - strandat 4019.714 kb on + strandat 4019.715 kb on - strandat 4019.746 kb on + strandat 4019.747 kb on - strandat 4019.747 kb on - strandat 4019.828 kb on - strandat 4019.861 kb on + strandat 4019.862 kb on - strandat 4019.862 kb on - strandat 4019.862 kb on - strandat 4019.888 kb on - strandat 4019.959 kb on - strandat 4019.959 kb on - strandat 4019.968 kb on + strandat 4019.993 kb on - strandat 4019.993 kb on - strandat 4019.993 kb on - strandat 4020.096 kb on + strandat 4020.144 kb on + strandat 4020.144 kb on + strandat 4020.144 kb on + strandat 4020.144 kb on + strandat 4020.144 kb on + strandat 4020.145 kb on - strandat 4020.145 kb on - strandat 4020.145 kb on - strandat 4020.145 kb on - strandat 4020.145 kb on - strandat 4020.221 kb on + strand, within AO356_17815at 4020.221 kb on + strand, within AO356_17815at 4020.221 kb on + strand, within AO356_17815at 4020.222 kb on - strand, within AO356_17815at 4020.222 kb on - strand, within AO356_17815at 4020.222 kb on - strand, within AO356_17815at 4020.348 kb on + strand, within AO356_17815at 4020.348 kb on + strand, within AO356_17815at 4020.348 kb on + strand, within AO356_17815at 4020.349 kb on - strand, within AO356_17815at 4020.349 kb on - strand, within AO356_17815at 4020.349 kb on - strand, within AO356_17815at 4020.456 kb on + strand, within AO356_17815at 4020.456 kb on + strand, within AO356_17815at 4020.457 kb on - strand, within AO356_17815at 4020.457 kb on - strand, within AO356_17815at 4020.480 kb on - strand, within AO356_17815at 4020.480 kb on - strand, within AO356_17815at 4020.538 kb on - strand, within AO356_17815at 4020.547 kb on - strand, within AO356_17815at 4020.547 kb on - strand, within AO356_17815

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,017,109 - -0.1
4,017,109 - +0.8
4,017,109 - -0.2
4,017,967 + +0.8
4,017,968 - -0.3
4,017,968 - +0.4
4,017,968 - +0.1
4,017,970 + +1.1
4,017,970 + +1.2
4,017,970 + -1.0
4,017,970 + -0.2
4,017,970 + -0.3
4,017,971 - -1.3
4,017,971 - -0.5
4,017,971 - -1.9
4,017,971 - +0.0
4,017,971 - -0.1
4,017,971 - +0.1
4,017,976 + -0.7
4,017,976 + +0.7
4,017,976 + -0.1
4,017,976 + -0.1
4,017,976 + +0.9
4,017,976 + +0.3
4,017,976 + +0.4
4,017,976 + -0.2
4,017,976 + +0.6
4,017,977 - -0.5
4,017,977 - -0.6
4,017,977 - +0.2
4,017,977 - +1.0
4,017,977 - -0.2
4,017,977 - +1.0
4,017,977 - +0.4
4,017,983 - -0.0
4,018,062 - +0.2
4,018,062 - -0.7
4,019,519 + +0.6
4,019,620 - +1.3
4,019,620 - -0.2
4,019,664 + +0.3
4,019,665 - -0.2
4,019,665 - +0.7
4,019,665 - +0.5
4,019,697 - -0.1
4,019,713 - +0.1
4,019,713 - -0.4
4,019,714 + -0.3
4,019,715 - -0.3
4,019,746 + -0.9
4,019,747 - -0.3
4,019,747 - +0.9
4,019,828 - -0.7
4,019,861 + +0.8
4,019,862 - -0.4
4,019,862 - +0.4
4,019,862 - +0.3
4,019,888 - -0.7
4,019,959 - -0.3
4,019,959 - -1.0
4,019,968 + +1.2
4,019,993 - +0.4
4,019,993 - +0.4
4,019,993 - +0.8
4,020,096 + -0.5
4,020,144 + -0.4
4,020,144 + -0.0
4,020,144 + +0.6
4,020,144 + -0.5
4,020,144 + -0.0
4,020,145 - -0.0
4,020,145 - +0.1
4,020,145 - -1.4
4,020,145 - -0.9
4,020,145 - +0.5
4,020,221 + AO356_17815 0.17 -0.1
4,020,221 + AO356_17815 0.17 +1.1
4,020,221 + AO356_17815 0.17 +0.8
4,020,222 - AO356_17815 0.17 -0.6
4,020,222 - AO356_17815 0.17 -0.2
4,020,222 - AO356_17815 0.17 -0.5
4,020,348 + AO356_17815 0.28 -0.6
4,020,348 + AO356_17815 0.28 +0.1
4,020,348 + AO356_17815 0.28 +0.5
4,020,349 - AO356_17815 0.28 -0.4
4,020,349 - AO356_17815 0.28 +0.6
4,020,349 - AO356_17815 0.28 -0.1
4,020,456 + AO356_17815 0.38 -0.5
4,020,456 + AO356_17815 0.38 -0.3
4,020,457 - AO356_17815 0.38 +0.4
4,020,457 - AO356_17815 0.38 +0.6
4,020,480 - AO356_17815 0.40 +0.8
4,020,480 - AO356_17815 0.40 -0.4
4,020,538 - AO356_17815 0.45 +1.3
4,020,547 - AO356_17815 0.46 +0.5
4,020,547 - AO356_17815 0.46 +1.2

Or see this region's nucleotide sequence