Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11605

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11600 and AO356_11605 are separated by 3 nucleotidesAO356_11605 and AO356_11610 are separated by 80 nucleotides AO356_11600: AO356_11600 - glycine--tRNA ligase subunit beta, at 2,625,271 to 2,627,325 _11600 AO356_11605: AO356_11605 - histidinol phosphatase, at 2,627,329 to 2,627,862 _11605 AO356_11610: AO356_11610 - glycerol acyltransferase, at 2,627,943 to 2,628,722 _11610 Position (kb) 2627 2628Strain fitness (log2 ratio) -1 0 1at 2627.860 kb on + strandat 2627.860 kb on + strandat 2627.860 kb on + strandat 2627.942 kb on + strandat 2627.943 kb on - strandat 2628.223 kb on - strand, within AO356_11610at 2628.631 kb on + strand, within AO356_11610at 2628.631 kb on + strand, within AO356_11610at 2628.833 kb on + strandat 2628.841 kb on + strandat 2628.842 kb on - strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.855 kb on - strandat 2628.855 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,627,860 + -0.9
2,627,860 + +0.6
2,627,860 + +0.2
2,627,942 + +1.5
2,627,943 - -0.3
2,628,223 - AO356_11610 0.36 -0.3
2,628,631 + AO356_11610 0.88 -1.0
2,628,631 + AO356_11610 0.88 -1.2
2,628,833 + -0.1
2,628,841 + -0.5
2,628,842 - +0.6
2,628,854 + -0.1
2,628,854 + +0.5
2,628,854 + +1.1
2,628,854 + -0.2
2,628,854 + -0.4
2,628,854 + +0.7
2,628,854 + +0.3
2,628,855 - +0.1
2,628,855 - -0.7

Or see this region's nucleotide sequence