Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03895

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03890 and AO356_03895 are separated by 64 nucleotidesAO356_03895 and AO356_03900 are separated by 110 nucleotides AO356_03890: AO356_03890 - glycosyl transferase family 2, at 860,218 to 863,112 _03890 AO356_03895: AO356_03895 - glycosyl transferase family 2, at 863,177 to 866,758 _03895 AO356_03900: AO356_03900 - flagellar biosynthesis protein FlgL, at 866,869 to 868,434 _03900 Position (kb) 863 864 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 862.184 kb on + strand, within AO356_03890at 862.184 kb on + strand, within AO356_03890at 862.184 kb on + strand, within AO356_03890at 862.184 kb on + strand, within AO356_03890at 862.185 kb on - strand, within AO356_03890at 862.185 kb on - strand, within AO356_03890at 862.185 kb on - strand, within AO356_03890at 862.202 kb on + strand, within AO356_03890at 862.202 kb on + strand, within AO356_03890at 862.202 kb on + strand, within AO356_03890at 862.203 kb on - strand, within AO356_03890at 862.203 kb on - strand, within AO356_03890at 862.322 kb on + strand, within AO356_03890at 862.322 kb on + strand, within AO356_03890at 862.322 kb on + strand, within AO356_03890at 862.322 kb on + strand, within AO356_03890at 862.322 kb on + strand, within AO356_03890at 862.323 kb on - strand, within AO356_03890at 862.323 kb on - strand, within AO356_03890at 862.339 kb on - strand, within AO356_03890at 862.455 kb on + strand, within AO356_03890at 862.472 kb on + strand, within AO356_03890at 862.517 kb on + strand, within AO356_03890at 862.518 kb on - strand, within AO356_03890at 862.518 kb on - strand, within AO356_03890at 862.571 kb on + strand, within AO356_03890at 862.572 kb on - strand, within AO356_03890at 862.670 kb on + strand, within AO356_03890at 862.700 kb on + strand, within AO356_03890at 862.701 kb on - strand, within AO356_03890at 862.701 kb on - strand, within AO356_03890at 862.701 kb on - strand, within AO356_03890at 862.704 kb on - strand, within AO356_03890at 862.704 kb on - strand, within AO356_03890at 862.704 kb on - strand, within AO356_03890at 862.704 kb on - strand, within AO356_03890at 862.845 kb on - strandat 862.916 kb on + strandat 862.916 kb on + strandat 862.917 kb on - strandat 862.917 kb on - strandat 862.944 kb on + strandat 862.944 kb on + strandat 863.062 kb on - strandat 863.112 kb on + strandat 863.112 kb on + strandat 863.113 kb on - strandat 863.113 kb on - strandat 863.123 kb on + strandat 863.206 kb on - strandat 863.230 kb on + strandat 863.231 kb on - strandat 863.255 kb on + strandat 863.256 kb on - strandat 863.256 kb on - strandat 863.303 kb on - strandat 863.351 kb on - strandat 863.415 kb on + strandat 863.415 kb on + strandat 863.416 kb on - strandat 863.455 kb on + strandat 863.456 kb on - strandat 863.456 kb on - strandat 863.456 kb on - strandat 863.456 kb on - strandat 863.456 kb on - strandat 863.551 kb on + strand, within AO356_03895at 863.551 kb on + strand, within AO356_03895at 863.551 kb on + strand, within AO356_03895at 863.551 kb on + strand, within AO356_03895at 863.552 kb on - strand, within AO356_03895at 863.553 kb on + strand, within AO356_03895at 863.553 kb on + strand, within AO356_03895at 863.553 kb on + strand, within AO356_03895at 863.553 kb on + strand, within AO356_03895at 863.554 kb on - strand, within AO356_03895at 863.554 kb on - strand, within AO356_03895at 863.554 kb on - strand, within AO356_03895at 863.554 kb on - strand, within AO356_03895at 863.807 kb on + strand, within AO356_03895at 863.807 kb on + strand, within AO356_03895at 863.807 kb on + strand, within AO356_03895at 863.840 kb on + strand, within AO356_03895at 863.840 kb on + strand, within AO356_03895at 863.841 kb on - strand, within AO356_03895at 863.866 kb on + strand, within AO356_03895at 863.867 kb on - strand, within AO356_03895at 863.867 kb on - strand, within AO356_03895at 863.867 kb on - strand, within AO356_03895at 863.907 kb on + strand, within AO356_03895at 863.907 kb on + strand, within AO356_03895at 863.907 kb on + strand, within AO356_03895at 863.907 kb on + strand, within AO356_03895at 863.907 kb on + strand, within AO356_03895at 863.907 kb on + strand, within AO356_03895at 863.908 kb on - strand, within AO356_03895at 863.908 kb on - strand, within AO356_03895at 863.908 kb on - strand, within AO356_03895at 863.908 kb on - strand, within AO356_03895at 863.908 kb on - strand, within AO356_03895at 863.908 kb on - strand, within AO356_03895at 863.908 kb on - strand, within AO356_03895at 863.943 kb on + strand, within AO356_03895at 863.943 kb on + strand, within AO356_03895at 863.944 kb on - strand, within AO356_03895at 863.974 kb on + strand, within AO356_03895at 863.975 kb on - strand, within AO356_03895at 863.986 kb on - strand, within AO356_03895at 863.986 kb on - strand, within AO356_03895at 863.986 kb on - strand, within AO356_03895at 864.047 kb on - strand, within AO356_03895at 864.047 kb on - strand, within AO356_03895at 864.051 kb on + strand, within AO356_03895at 864.051 kb on + strand, within AO356_03895at 864.052 kb on - strand, within AO356_03895at 864.052 kb on - strand, within AO356_03895at 864.096 kb on - strand, within AO356_03895at 864.133 kb on + strand, within AO356_03895at 864.249 kb on + strand, within AO356_03895at 864.250 kb on - strand, within AO356_03895at 864.289 kb on - strand, within AO356_03895at 864.375 kb on + strand, within AO356_03895at 864.375 kb on + strand, within AO356_03895at 864.376 kb on - strand, within AO356_03895at 864.376 kb on - strand, within AO356_03895at 864.396 kb on + strand, within AO356_03895at 864.397 kb on - strand, within AO356_03895at 864.423 kb on - strand, within AO356_03895at 864.423 kb on - strand, within AO356_03895at 864.556 kb on + strand, within AO356_03895at 864.556 kb on + strand, within AO356_03895at 864.556 kb on + strand, within AO356_03895at 864.556 kb on + strand, within AO356_03895at 864.557 kb on - strand, within AO356_03895at 864.557 kb on - strand, within AO356_03895at 864.558 kb on + strand, within AO356_03895at 864.559 kb on - strand, within AO356_03895at 864.559 kb on - strand, within AO356_03895at 864.765 kb on + strand, within AO356_03895at 864.765 kb on + strand, within AO356_03895at 864.765 kb on + strand, within AO356_03895at 864.766 kb on - strand, within AO356_03895at 864.766 kb on - strand, within AO356_03895at 864.766 kb on - strand, within AO356_03895at 864.766 kb on - strand, within AO356_03895at 864.766 kb on - strand, within AO356_03895at 864.836 kb on + strand, within AO356_03895at 864.836 kb on + strand, within AO356_03895at 864.837 kb on - strand, within AO356_03895at 864.930 kb on + strand, within AO356_03895at 864.930 kb on + strand, within AO356_03895at 865.041 kb on + strand, within AO356_03895at 865.042 kb on - strand, within AO356_03895at 865.109 kb on + strand, within AO356_03895at 865.109 kb on + strand, within AO356_03895at 865.109 kb on + strand, within AO356_03895at 865.110 kb on - strand, within AO356_03895at 865.344 kb on + strand, within AO356_03895at 865.344 kb on + strand, within AO356_03895at 865.344 kb on + strand, within AO356_03895at 865.344 kb on + strand, within AO356_03895at 865.344 kb on + strand, within AO356_03895at 865.344 kb on + strand, within AO356_03895at 865.345 kb on - strand, within AO356_03895at 865.345 kb on - strand, within AO356_03895at 865.345 kb on - strand, within AO356_03895at 865.434 kb on + strand, within AO356_03895at 865.524 kb on + strand, within AO356_03895at 865.524 kb on + strand, within AO356_03895at 865.662 kb on + strand, within AO356_03895at 865.662 kb on + strand, within AO356_03895at 865.663 kb on - strand, within AO356_03895at 865.663 kb on - strand, within AO356_03895at 865.663 kb on - strand, within AO356_03895at 865.663 kb on - strand, within AO356_03895at 865.663 kb on - strand, within AO356_03895at 865.693 kb on + strand, within AO356_03895at 865.704 kb on + strand, within AO356_03895at 865.705 kb on - strand, within AO356_03895at 865.705 kb on - strand, within AO356_03895at 865.830 kb on + strand, within AO356_03895at 865.830 kb on + strand, within AO356_03895at 865.831 kb on - strand, within AO356_03895at 865.831 kb on - strand, within AO356_03895at 865.831 kb on - strand, within AO356_03895at 865.842 kb on + strand, within AO356_03895at 865.843 kb on - strand, within AO356_03895at 865.905 kb on + strand, within AO356_03895at 865.906 kb on - strand, within AO356_03895at 866.266 kb on + strand, within AO356_03895at 866.266 kb on + strand, within AO356_03895at 866.266 kb on + strand, within AO356_03895at 866.267 kb on - strand, within AO356_03895at 866.267 kb on - strand, within AO356_03895at 866.341 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.385 kb on - strand, within AO356_03895at 866.411 kb on + strandat 866.412 kb on - strandat 866.412 kb on - strandat 866.412 kb on - strandat 866.412 kb on - strandat 866.412 kb on - strandat 866.569 kb on - strandat 866.578 kb on + strandat 866.579 kb on - strandat 866.667 kb on + strandat 866.667 kb on + strandat 866.668 kb on - strandat 866.817 kb on + strandat 866.818 kb on - strandat 866.818 kb on - strandat 866.818 kb on - strandat 866.819 kb on + strandat 866.819 kb on + strandat 866.820 kb on - strandat 866.843 kb on + strandat 866.843 kb on + strandat 866.843 kb on + strandat 866.844 kb on - strandat 866.844 kb on - strandat 866.845 kb on + strandat 866.845 kb on + strandat 866.846 kb on - strandat 866.846 kb on - strandat 867.240 kb on + strand, within AO356_03900at 867.241 kb on - strand, within AO356_03900at 867.378 kb on - strand, within AO356_03900at 867.443 kb on + strand, within AO356_03900at 867.444 kb on - strand, within AO356_03900at 867.549 kb on + strand, within AO356_03900at 867.549 kb on + strand, within AO356_03900at 867.550 kb on - strand, within AO356_03900at 867.649 kb on - strand, within AO356_03900at 867.651 kb on + strand, within AO356_03900at 867.651 kb on + strand, within AO356_03900at 867.651 kb on + strand, within AO356_03900at 867.652 kb on - strand, within AO356_03900at 867.652 kb on - strand, within AO356_03900

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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862,184 + AO356_03890 0.68 -0.1
862,184 + AO356_03890 0.68 +0.4
862,184 + AO356_03890 0.68 +0.8
862,184 + AO356_03890 0.68 +0.9
862,185 - AO356_03890 0.68 -0.5
862,185 - AO356_03890 0.68 +0.6
862,185 - AO356_03890 0.68 -0.0
862,202 + AO356_03890 0.69 +1.1
862,202 + AO356_03890 0.69 +0.4
862,202 + AO356_03890 0.69 +0.1
862,203 - AO356_03890 0.69 +0.0
862,203 - AO356_03890 0.69 +0.9
862,322 + AO356_03890 0.73 -0.0
862,322 + AO356_03890 0.73 +0.3
862,322 + AO356_03890 0.73 +0.1
862,322 + AO356_03890 0.73 +0.7
862,322 + AO356_03890 0.73 +0.1
862,323 - AO356_03890 0.73 +0.3
862,323 - AO356_03890 0.73 +0.5
862,339 - AO356_03890 0.73 -0.3
862,455 + AO356_03890 0.77 +0.0
862,472 + AO356_03890 0.78 -1.2
862,517 + AO356_03890 0.79 -0.3
862,518 - AO356_03890 0.79 +0.6
862,518 - AO356_03890 0.79 -0.2
862,571 + AO356_03890 0.81 -0.6
862,572 - AO356_03890 0.81 -0.4
862,670 + AO356_03890 0.85 +0.4
862,700 + AO356_03890 0.86 +0.8
862,701 - AO356_03890 0.86 -0.4
862,701 - AO356_03890 0.86 +0.2
862,701 - AO356_03890 0.86 +1.1
862,704 - AO356_03890 0.86 +0.5
862,704 - AO356_03890 0.86 +0.9
862,704 - AO356_03890 0.86 -0.9
862,704 - AO356_03890 0.86 +0.1
862,845 - -0.6
862,916 + -0.3
862,916 + -0.1
862,917 - +0.3
862,917 - +0.5
862,944 + +0.3
862,944 + -0.2
863,062 - +0.1
863,112 + +1.0
863,112 + +0.2
863,113 - -0.9
863,113 - -0.0
863,123 + -0.0
863,206 - +1.4
863,230 + -0.5
863,231 - -0.2
863,255 + +0.5
863,256 - +0.8
863,256 - -0.9
863,303 - +0.3
863,351 - +1.4
863,415 + -0.1
863,415 + -0.7
863,416 - +0.1
863,455 + +0.3
863,456 - +0.0
863,456 - -0.2
863,456 - +1.0
863,456 - +0.1
863,456 - -0.2
863,551 + AO356_03895 0.10 -0.5
863,551 + AO356_03895 0.10 -1.0
863,551 + AO356_03895 0.10 +0.4
863,551 + AO356_03895 0.10 +0.9
863,552 - AO356_03895 0.10 +0.6
863,553 + AO356_03895 0.10 +1.3
863,553 + AO356_03895 0.10 +0.5
863,553 + AO356_03895 0.10 +0.5
863,553 + AO356_03895 0.10 +0.6
863,554 - AO356_03895 0.11 -1.0
863,554 - AO356_03895 0.11 -0.5
863,554 - AO356_03895 0.11 +0.4
863,554 - AO356_03895 0.11 +0.9
863,807 + AO356_03895 0.18 +0.3
863,807 + AO356_03895 0.18 -0.5
863,807 + AO356_03895 0.18 +0.9
863,840 + AO356_03895 0.19 -0.1
863,840 + AO356_03895 0.19 -0.1
863,841 - AO356_03895 0.19 -0.1
863,866 + AO356_03895 0.19 -0.6
863,867 - AO356_03895 0.19 +0.8
863,867 - AO356_03895 0.19 -1.1
863,867 - AO356_03895 0.19 +0.1
863,907 + AO356_03895 0.20 -0.7
863,907 + AO356_03895 0.20 +0.8
863,907 + AO356_03895 0.20 +0.1
863,907 + AO356_03895 0.20 -0.1
863,907 + AO356_03895 0.20 +0.2
863,907 + AO356_03895 0.20 +0.1
863,908 - AO356_03895 0.20 +0.3
863,908 - AO356_03895 0.20 +0.4
863,908 - AO356_03895 0.20 +0.7
863,908 - AO356_03895 0.20 +0.4
863,908 - AO356_03895 0.20 +0.7
863,908 - AO356_03895 0.20 +0.7
863,908 - AO356_03895 0.20 -0.1
863,943 + AO356_03895 0.21 -0.5
863,943 + AO356_03895 0.21 +0.5
863,944 - AO356_03895 0.21 +0.8
863,974 + AO356_03895 0.22 -0.7
863,975 - AO356_03895 0.22 +0.1
863,986 - AO356_03895 0.23 +0.8
863,986 - AO356_03895 0.23 +0.4
863,986 - AO356_03895 0.23 -0.9
864,047 - AO356_03895 0.24 +1.5
864,047 - AO356_03895 0.24 -0.2
864,051 + AO356_03895 0.24 +0.4
864,051 + AO356_03895 0.24 -0.5
864,052 - AO356_03895 0.24 -0.3
864,052 - AO356_03895 0.24 +0.2
864,096 - AO356_03895 0.26 +0.2
864,133 + AO356_03895 0.27 -0.1
864,249 + AO356_03895 0.30 +0.5
864,250 - AO356_03895 0.30 +0.1
864,289 - AO356_03895 0.31 -0.6
864,375 + AO356_03895 0.33 +0.4
864,375 + AO356_03895 0.33 -0.5
864,376 - AO356_03895 0.33 +0.1
864,376 - AO356_03895 0.33 -0.6
864,396 + AO356_03895 0.34 +0.2
864,397 - AO356_03895 0.34 +0.9
864,423 - AO356_03895 0.35 +0.3
864,423 - AO356_03895 0.35 -1.1
864,556 + AO356_03895 0.38 +0.6
864,556 + AO356_03895 0.38 -0.6
864,556 + AO356_03895 0.38 +0.4
864,556 + AO356_03895 0.38 -0.3
864,557 - AO356_03895 0.39 -0.1
864,557 - AO356_03895 0.39 -1.1
864,558 + AO356_03895 0.39 +0.3
864,559 - AO356_03895 0.39 -0.3
864,559 - AO356_03895 0.39 -0.5
864,765 + AO356_03895 0.44 -0.1
864,765 + AO356_03895 0.44 +0.4
864,765 + AO356_03895 0.44 -0.5
864,766 - AO356_03895 0.44 +1.0
864,766 - AO356_03895 0.44 -0.1
864,766 - AO356_03895 0.44 +0.6
864,766 - AO356_03895 0.44 +0.1
864,766 - AO356_03895 0.44 -0.3
864,836 + AO356_03895 0.46 +0.6
864,836 + AO356_03895 0.46 +0.2
864,837 - AO356_03895 0.46 +0.1
864,930 + AO356_03895 0.49 +0.1
864,930 + AO356_03895 0.49 +0.0
865,041 + AO356_03895 0.52 +0.4
865,042 - AO356_03895 0.52 -0.1
865,109 + AO356_03895 0.54 +1.1
865,109 + AO356_03895 0.54 +0.0
865,109 + AO356_03895 0.54 +0.9
865,110 - AO356_03895 0.54 +0.4
865,344 + AO356_03895 0.60 +1.0
865,344 + AO356_03895 0.60 +0.2
865,344 + AO356_03895 0.60 -0.0
865,344 + AO356_03895 0.60 +0.4
865,344 + AO356_03895 0.60 +0.4
865,344 + AO356_03895 0.60 -0.2
865,345 - AO356_03895 0.61 +0.0
865,345 - AO356_03895 0.61 -0.1
865,345 - AO356_03895 0.61 +0.1
865,434 + AO356_03895 0.63 +0.0
865,524 + AO356_03895 0.66 +0.2
865,524 + AO356_03895 0.66 +0.2
865,662 + AO356_03895 0.69 +0.1
865,662 + AO356_03895 0.69 +0.6
865,663 - AO356_03895 0.69 +0.1
865,663 - AO356_03895 0.69 -0.2
865,663 - AO356_03895 0.69 +0.2
865,663 - AO356_03895 0.69 -0.4
865,663 - AO356_03895 0.69 -0.1
865,693 + AO356_03895 0.70 +0.2
865,704 + AO356_03895 0.71 +0.3
865,705 - AO356_03895 0.71 +0.5
865,705 - AO356_03895 0.71 +0.4
865,830 + AO356_03895 0.74 -1.0
865,830 + AO356_03895 0.74 +0.1
865,831 - AO356_03895 0.74 -0.8
865,831 - AO356_03895 0.74 -0.2
865,831 - AO356_03895 0.74 +1.6
865,842 + AO356_03895 0.74 -0.1
865,843 - AO356_03895 0.74 -1.2
865,905 + AO356_03895 0.76 -0.2
865,906 - AO356_03895 0.76 -0.5
866,266 + AO356_03895 0.86 -1.8
866,266 + AO356_03895 0.86 +0.1
866,266 + AO356_03895 0.86 -0.8
866,267 - AO356_03895 0.86 +0.1
866,267 - AO356_03895 0.86 -0.6
866,341 + AO356_03895 0.88 +2.1
866,367 + AO356_03895 0.89 +0.1
866,367 + AO356_03895 0.89 +0.1
866,367 + AO356_03895 0.89 +1.1
866,367 + AO356_03895 0.89 -0.4
866,367 + AO356_03895 0.89 +0.2
866,367 + AO356_03895 0.89 +0.8
866,367 + AO356_03895 0.89 -0.8
866,367 + AO356_03895 0.89 -0.1
866,367 + AO356_03895 0.89 +0.4
866,368 - AO356_03895 0.89 +1.1
866,368 - AO356_03895 0.89 +0.3
866,368 - AO356_03895 0.89 -1.5
866,368 - AO356_03895 0.89 +0.6
866,368 - AO356_03895 0.89 +0.3
866,368 - AO356_03895 0.89 -0.9
866,368 - AO356_03895 0.89 +0.7
866,368 - AO356_03895 0.89 +0.4
866,368 - AO356_03895 0.89 -0.0
866,368 - AO356_03895 0.89 +1.9
866,385 - AO356_03895 0.90 +0.8
866,411 + +0.5
866,412 - +0.9
866,412 - +1.1
866,412 - +0.1
866,412 - -0.2
866,412 - +0.4
866,569 - -0.2
866,578 + -0.2
866,579 - -0.8
866,667 + -0.2
866,667 + -0.2
866,668 - +0.5
866,817 + +0.2
866,818 - +0.2
866,818 - -1.2
866,818 - +0.0
866,819 + +0.3
866,819 + +0.7
866,820 - -1.0
866,843 + +0.3
866,843 + +0.3
866,843 + -0.0
866,844 - -0.1
866,844 - +0.1
866,845 + -0.4
866,845 + +0.0
866,846 - +0.7
866,846 - +0.2
867,240 + AO356_03900 0.24 -0.7
867,241 - AO356_03900 0.24 +1.3
867,378 - AO356_03900 0.33 +1.9
867,443 + AO356_03900 0.37 +0.6
867,444 - AO356_03900 0.37 +0.7
867,549 + AO356_03900 0.43 +0.9
867,549 + AO356_03900 0.43 +1.3
867,550 - AO356_03900 0.43 +1.3
867,649 - AO356_03900 0.50 +0.5
867,651 + AO356_03900 0.50 +1.6
867,651 + AO356_03900 0.50 +0.7
867,651 + AO356_03900 0.50 +0.3
867,652 - AO356_03900 0.50 +0.7
867,652 - AO356_03900 0.50 +1.3

Or see this region's nucleotide sequence