Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03880

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03870 and AO356_03875 are separated by 82 nucleotidesAO356_03875 and AO356_03880 are separated by 72 nucleotidesAO356_03880 and AO356_03885 are separated by 274 nucleotides AO356_03870: AO356_03870 - flagellar hook protein FliD, at 855,887 to 857,317 _03870 AO356_03875: AO356_03875 - flagellar biosynthesis protein FlaG, at 857,400 to 857,765 _03875 AO356_03880: AO356_03880 - flagellin, at 857,838 to 858,686 _03880 AO356_03885: AO356_03885 - beta-ketoacyl-ACP synthase, at 858,961 to 859,887 _03885 Position (kb) 857 858 859Strain fitness (log2 ratio) -2 -1 0 1 2at 856.883 kb on + strand, within AO356_03870at 856.884 kb on - strand, within AO356_03870at 856.884 kb on - strand, within AO356_03870at 856.884 kb on - strand, within AO356_03870at 856.897 kb on - strand, within AO356_03870at 856.897 kb on - strand, within AO356_03870at 856.927 kb on + strand, within AO356_03870at 856.927 kb on + strand, within AO356_03870at 856.948 kb on + strand, within AO356_03870at 856.949 kb on - strand, within AO356_03870at 856.949 kb on - strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.020 kb on + strand, within AO356_03870at 857.021 kb on - strand, within AO356_03870at 857.039 kb on - strand, within AO356_03870at 857.179 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.180 kb on - strandat 857.180 kb on - strandat 857.180 kb on - strandat 857.180 kb on - strandat 857.180 kb on - strandat 857.285 kb on + strandat 857.300 kb on + strandat 857.300 kb on + strandat 857.357 kb on + strandat 857.357 kb on + strandat 857.357 kb on + strandat 857.357 kb on + strandat 857.358 kb on - strandat 857.376 kb on + strandat 857.376 kb on + strandat 857.377 kb on - strandat 857.377 kb on - strandat 857.377 kb on - strandat 857.377 kb on - strandat 857.523 kb on + strand, within AO356_03875at 857.523 kb on + strand, within AO356_03875at 857.523 kb on + strand, within AO356_03875at 857.524 kb on - strand, within AO356_03875at 857.546 kb on + strand, within AO356_03875at 857.640 kb on - strand, within AO356_03875at 857.711 kb on + strand, within AO356_03875at 857.711 kb on + strand, within AO356_03875at 857.711 kb on + strand, within AO356_03875at 857.711 kb on + strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.759 kb on + strandat 857.836 kb on + strandat 857.836 kb on + strandat 857.837 kb on - strandat 857.837 kb on - strandat 857.837 kb on - strandat 857.837 kb on - strandat 857.839 kb on + strandat 857.840 kb on - strandat 857.856 kb on + strandat 857.857 kb on - strandat 857.897 kb on + strandat 857.897 kb on + strandat 857.958 kb on - strand, within AO356_03880at 857.964 kb on + strand, within AO356_03880at 857.965 kb on - strand, within AO356_03880at 858.128 kb on + strand, within AO356_03880at 858.128 kb on + strand, within AO356_03880at 858.129 kb on - strand, within AO356_03880at 858.359 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.474 kb on - strand, within AO356_03880at 858.665 kb on + strandat 858.665 kb on + strandat 858.665 kb on + strandat 858.665 kb on + strandat 858.672 kb on + strandat 858.672 kb on + strandat 858.678 kb on + strandat 858.749 kb on - strandat 858.761 kb on + strandat 858.761 kb on + strandat 858.762 kb on - strandat 858.762 kb on - strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.769 kb on - strandat 859.086 kb on + strand, within AO356_03885at 859.087 kb on - strand, within AO356_03885at 859.250 kb on - strand, within AO356_03885at 859.523 kb on + strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.538 kb on + strand, within AO356_03885at 859.538 kb on + strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.558 kb on + strand, within AO356_03885at 859.558 kb on + strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.560 kb on + strand, within AO356_03885at 859.560 kb on + strand, within AO356_03885

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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856,883 + AO356_03870 0.70 +0.3
856,884 - AO356_03870 0.70 +0.6
856,884 - AO356_03870 0.70 -0.1
856,884 - AO356_03870 0.70 +0.8
856,897 - AO356_03870 0.71 +0.2
856,897 - AO356_03870 0.71 +1.0
856,927 + AO356_03870 0.73 +0.5
856,927 + AO356_03870 0.73 +1.7
856,948 + AO356_03870 0.74 +0.9
856,949 - AO356_03870 0.74 +0.8
856,949 - AO356_03870 0.74 +0.1
857,016 + AO356_03870 0.79 +0.5
857,016 + AO356_03870 0.79 +1.2
857,016 + AO356_03870 0.79 -0.4
857,016 + AO356_03870 0.79 +0.9
857,016 + AO356_03870 0.79 +1.1
857,016 + AO356_03870 0.79 +1.3
857,016 + AO356_03870 0.79 +0.7
857,016 + AO356_03870 0.79 +0.7
857,016 + AO356_03870 0.79 +2.4
857,017 - AO356_03870 0.79 +1.4
857,017 - AO356_03870 0.79 -0.0
857,017 - AO356_03870 0.79 +0.1
857,017 - AO356_03870 0.79 +1.0
857,017 - AO356_03870 0.79 +0.9
857,017 - AO356_03870 0.79 +0.9
857,017 - AO356_03870 0.79 +1.1
857,017 - AO356_03870 0.79 +0.2
857,017 - AO356_03870 0.79 -0.0
857,020 + AO356_03870 0.79 +0.4
857,021 - AO356_03870 0.79 +0.6
857,039 - AO356_03870 0.81 -0.1
857,179 + +1.0
857,179 + +1.0
857,179 + -0.2
857,179 + -0.6
857,179 + +1.4
857,179 + +0.6
857,180 - +0.1
857,180 - +0.9
857,180 - +1.3
857,180 - +0.5
857,180 - +0.7
857,285 + +0.7
857,300 + +0.3
857,300 + +0.1
857,357 + +0.6
857,357 + +0.2
857,357 + +0.6
857,357 + +0.1
857,358 - +0.4
857,376 + +0.9
857,376 + +0.9
857,377 - -0.5
857,377 - +1.1
857,377 - -0.2
857,377 - -0.3
857,523 + AO356_03875 0.34 +0.2
857,523 + AO356_03875 0.34 +0.9
857,523 + AO356_03875 0.34 -0.1
857,524 - AO356_03875 0.34 +0.3
857,546 + AO356_03875 0.40 -0.8
857,640 - AO356_03875 0.66 +0.3
857,711 + AO356_03875 0.85 +0.3
857,711 + AO356_03875 0.85 +0.3
857,711 + AO356_03875 0.85 -0.8
857,711 + AO356_03875 0.85 -0.4
857,712 - AO356_03875 0.85 -0.4
857,712 - AO356_03875 0.85 -0.5
857,712 - AO356_03875 0.85 +0.6
857,712 - AO356_03875 0.85 -2.0
857,712 - AO356_03875 0.85 -0.2
857,759 + -0.5
857,836 + +0.6
857,836 + +1.1
857,837 - -0.2
857,837 - +1.4
857,837 - +0.3
857,837 - +0.9
857,839 + +0.2
857,840 - +0.5
857,856 + +1.0
857,857 - +0.2
857,897 + +0.1
857,897 + -0.3
857,958 - AO356_03880 0.14 +0.6
857,964 + AO356_03880 0.15 +1.1
857,965 - AO356_03880 0.15 +1.1
858,128 + AO356_03880 0.34 +1.6
858,128 + AO356_03880 0.34 +0.7
858,129 - AO356_03880 0.34 +1.1
858,359 + AO356_03880 0.61 +0.9
858,413 + AO356_03880 0.68 +0.7
858,413 + AO356_03880 0.68 +0.5
858,413 + AO356_03880 0.68 -0.2
858,413 + AO356_03880 0.68 +0.7
858,413 + AO356_03880 0.68 +1.3
858,414 - AO356_03880 0.68 +0.7
858,414 - AO356_03880 0.68 +0.6
858,414 - AO356_03880 0.68 +1.4
858,414 - AO356_03880 0.68 -0.9
858,414 - AO356_03880 0.68 +0.8
858,474 - AO356_03880 0.75 +1.2
858,665 + +0.8
858,665 + +0.4
858,665 + +1.1
858,665 + +1.4
858,672 + +0.2
858,672 + +0.3
858,678 + +0.8
858,749 - +0.5
858,761 + +0.7
858,761 + +1.5
858,762 - +0.5
858,762 - +0.8
858,764 + +1.2
858,764 + +1.2
858,764 + +0.4
858,764 + -0.1
858,764 + +0.6
858,764 + +0.8
858,764 + +0.9
858,765 - +0.3
858,765 - +0.6
858,765 - +1.0
858,765 - +1.1
858,765 - +0.9
858,768 + +1.1
858,768 + +1.5
858,768 + +0.5
858,768 + +0.9
858,768 + -0.1
858,769 - +0.9
859,086 + AO356_03885 0.13 -2.5
859,087 - AO356_03885 0.14 +1.1
859,250 - AO356_03885 0.31 -1.3
859,523 + AO356_03885 0.61 +1.5
859,524 - AO356_03885 0.61 -0.2
859,524 - AO356_03885 0.61 -1.5
859,524 - AO356_03885 0.61 -0.5
859,524 - AO356_03885 0.61 -0.0
859,524 - AO356_03885 0.61 -0.7
859,534 + AO356_03885 0.62 -0.4
859,534 + AO356_03885 0.62 -0.1
859,534 + AO356_03885 0.62 -0.4
859,534 + AO356_03885 0.62 -1.3
859,534 + AO356_03885 0.62 -0.8
859,534 + AO356_03885 0.62 -0.5
859,534 + AO356_03885 0.62 -0.5
859,534 + AO356_03885 0.62 -0.2
859,534 + AO356_03885 0.62 -0.0
859,534 + AO356_03885 0.62 +0.3
859,534 + AO356_03885 0.62 -1.1
859,535 - AO356_03885 0.62 -0.4
859,535 - AO356_03885 0.62 -0.5
859,535 - AO356_03885 0.62 -0.9
859,535 - AO356_03885 0.62 -0.1
859,535 - AO356_03885 0.62 -0.5
859,535 - AO356_03885 0.62 -0.8
859,538 + AO356_03885 0.62 -0.2
859,538 + AO356_03885 0.62 -0.7
859,539 - AO356_03885 0.62 +0.9
859,539 - AO356_03885 0.62 -0.5
859,539 - AO356_03885 0.62 -0.6
859,558 + AO356_03885 0.64 -1.1
859,558 + AO356_03885 0.64 -0.7
859,559 - AO356_03885 0.65 -1.2
859,559 - AO356_03885 0.65 +0.3
859,559 - AO356_03885 0.65 -1.0
859,559 - AO356_03885 0.65 -0.7
859,560 + AO356_03885 0.65 -0.7
859,560 + AO356_03885 0.65 +1.9

Or see this region's nucleotide sequence