Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03575

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03570 and AO356_03575 are separated by 283 nucleotidesAO356_03575 and AO356_03580 are separated by 3 nucleotides AO356_03570: AO356_03570 - FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 797,389 to 799,371 _03570 AO356_03575: AO356_03575 - asparagine synthase, at 799,655 to 801,427 _03575 AO356_03580: AO356_03580 - GNAT family acetyltransferase, at 801,431 to 803,176 _03580 Position (kb) 799 800 801 802Strain fitness (log2 ratio) -2 -1 0 1 2at 798.877 kb on + strand, within AO356_03570at 798.877 kb on + strand, within AO356_03570at 798.877 kb on + strand, within AO356_03570at 798.878 kb on - strand, within AO356_03570at 798.878 kb on - strand, within AO356_03570at 798.878 kb on - strand, within AO356_03570at 798.878 kb on - strand, within AO356_03570at 798.878 kb on - strand, within AO356_03570at 799.030 kb on - strand, within AO356_03570at 799.087 kb on + strand, within AO356_03570at 799.087 kb on + strand, within AO356_03570at 799.087 kb on + strand, within AO356_03570at 799.088 kb on - strand, within AO356_03570at 799.088 kb on - strand, within AO356_03570at 799.139 kb on - strand, within AO356_03570at 799.139 kb on - strand, within AO356_03570at 799.170 kb on - strand, within AO356_03570at 799.170 kb on - strand, within AO356_03570at 799.204 kb on + strandat 799.204 kb on + strandat 799.439 kb on + strandat 799.439 kb on + strandat 799.439 kb on + strandat 799.440 kb on - strandat 799.440 kb on - strandat 799.442 kb on + strandat 799.442 kb on + strandat 799.442 kb on + strandat 799.442 kb on + strandat 799.442 kb on + strandat 799.442 kb on + strandat 799.442 kb on + strandat 799.443 kb on - strandat 799.443 kb on - strandat 799.443 kb on - strandat 799.443 kb on - strandat 799.443 kb on - strandat 799.443 kb on - strandat 799.500 kb on - strandat 799.500 kb on - strandat 799.505 kb on + strandat 799.505 kb on + strandat 799.506 kb on - strandat 799.506 kb on - strandat 799.506 kb on - strandat 799.506 kb on - strandat 799.506 kb on - strandat 799.506 kb on - strandat 799.544 kb on - strandat 799.546 kb on - strandat 799.654 kb on + strandat 799.654 kb on + strandat 799.654 kb on + strandat 799.654 kb on + strandat 799.655 kb on - strandat 799.655 kb on - strandat 799.655 kb on - strandat 799.655 kb on - strandat 799.655 kb on - strandat 799.677 kb on + strandat 799.677 kb on + strandat 799.677 kb on + strandat 799.678 kb on - strandat 799.678 kb on - strandat 799.768 kb on + strandat 799.889 kb on + strand, within AO356_03575at 799.890 kb on - strand, within AO356_03575at 799.896 kb on - strand, within AO356_03575at 799.896 kb on - strand, within AO356_03575at 799.896 kb on - strand, within AO356_03575at 799.931 kb on + strand, within AO356_03575at 799.931 kb on + strand, within AO356_03575at 799.932 kb on - strand, within AO356_03575at 799.932 kb on - strand, within AO356_03575at 799.940 kb on + strand, within AO356_03575at 799.941 kb on - strand, within AO356_03575at 800.032 kb on + strand, within AO356_03575at 800.032 kb on + strand, within AO356_03575at 800.033 kb on - strand, within AO356_03575at 800.096 kb on + strand, within AO356_03575at 800.096 kb on + strand, within AO356_03575at 800.096 kb on + strand, within AO356_03575at 800.097 kb on - strand, within AO356_03575at 800.097 kb on - strand, within AO356_03575at 800.097 kb on - strand, within AO356_03575at 800.201 kb on + strand, within AO356_03575at 800.202 kb on - strand, within AO356_03575at 800.202 kb on - strand, within AO356_03575at 800.202 kb on - strand, within AO356_03575at 800.202 kb on - strand, within AO356_03575at 800.236 kb on + strand, within AO356_03575at 800.236 kb on + strand, within AO356_03575at 800.600 kb on + strand, within AO356_03575at 800.714 kb on + strand, within AO356_03575at 800.715 kb on - strand, within AO356_03575at 800.715 kb on - strand, within AO356_03575at 800.715 kb on - strand, within AO356_03575at 800.715 kb on - strand, within AO356_03575at 800.715 kb on - strand, within AO356_03575at 800.755 kb on - strand, within AO356_03575at 800.867 kb on + strand, within AO356_03575at 800.868 kb on - strand, within AO356_03575at 800.868 kb on - strand, within AO356_03575at 800.868 kb on - strand, within AO356_03575at 800.868 kb on - strand, within AO356_03575at 800.876 kb on + strand, within AO356_03575at 800.876 kb on + strand, within AO356_03575at 800.876 kb on + strand, within AO356_03575at 800.876 kb on + strand, within AO356_03575at 801.212 kb on + strand, within AO356_03575at 801.212 kb on + strand, within AO356_03575at 801.212 kb on + strand, within AO356_03575at 801.212 kb on + strand, within AO356_03575at 801.213 kb on - strand, within AO356_03575at 801.213 kb on - strand, within AO356_03575at 801.251 kb on - strandat 801.488 kb on + strandat 801.488 kb on + strandat 801.488 kb on + strandat 801.488 kb on + strandat 801.489 kb on - strandat 801.489 kb on - strandat 801.659 kb on + strand, within AO356_03580at 801.659 kb on + strand, within AO356_03580at 801.659 kb on + strand, within AO356_03580at 801.659 kb on + strand, within AO356_03580at 801.660 kb on - strand, within AO356_03580at 801.833 kb on + strand, within AO356_03580at 801.833 kb on + strand, within AO356_03580at 801.834 kb on - strand, within AO356_03580at 801.902 kb on + strand, within AO356_03580at 802.100 kb on + strand, within AO356_03580at 802.257 kb on - strand, within AO356_03580

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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798,877 + AO356_03570 0.75 +0.4
798,877 + AO356_03570 0.75 +0.3
798,877 + AO356_03570 0.75 -0.2
798,878 - AO356_03570 0.75 -0.3
798,878 - AO356_03570 0.75 -2.6
798,878 - AO356_03570 0.75 -0.3
798,878 - AO356_03570 0.75 -0.5
798,878 - AO356_03570 0.75 -0.2
799,030 - AO356_03570 0.83 +0.0
799,087 + AO356_03570 0.86 -0.4
799,087 + AO356_03570 0.86 -0.1
799,087 + AO356_03570 0.86 +0.0
799,088 - AO356_03570 0.86 +0.6
799,088 - AO356_03570 0.86 +0.3
799,139 - AO356_03570 0.88 -0.8
799,139 - AO356_03570 0.88 +0.4
799,170 - AO356_03570 0.90 -0.6
799,170 - AO356_03570 0.90 +0.1
799,204 + -0.6
799,204 + +0.2
799,439 + -0.5
799,439 + +0.1
799,439 + +0.3
799,440 - +0.5
799,440 - -0.2
799,442 + +0.4
799,442 + -0.1
799,442 + +0.7
799,442 + -0.5
799,442 + +1.9
799,442 + +0.6
799,442 + +0.1
799,443 - +0.7
799,443 - +0.1
799,443 - -0.1
799,443 - +0.2
799,443 - +0.4
799,443 - -0.6
799,500 - -0.9
799,500 - -0.3
799,505 + +0.9
799,505 + +0.1
799,506 - -1.4
799,506 - -1.1
799,506 - +0.2
799,506 - +0.9
799,506 - +0.1
799,506 - +0.3
799,544 - -0.9
799,546 - -0.3
799,654 + +0.3
799,654 + +0.4
799,654 + +1.0
799,654 + +0.0
799,655 - +0.8
799,655 - +0.3
799,655 - -0.3
799,655 - +0.1
799,655 - -0.5
799,677 + -0.1
799,677 + +0.4
799,677 + +0.2
799,678 - +0.7
799,678 - -0.1
799,768 + +0.3
799,889 + AO356_03575 0.13 +0.5
799,890 - AO356_03575 0.13 +0.4
799,896 - AO356_03575 0.14 +1.3
799,896 - AO356_03575 0.14 -0.4
799,896 - AO356_03575 0.14 +0.5
799,931 + AO356_03575 0.16 +0.6
799,931 + AO356_03575 0.16 -0.7
799,932 - AO356_03575 0.16 +1.0
799,932 - AO356_03575 0.16 +0.8
799,940 + AO356_03575 0.16 -0.4
799,941 - AO356_03575 0.16 +0.2
800,032 + AO356_03575 0.21 -1.7
800,032 + AO356_03575 0.21 +0.0
800,033 - AO356_03575 0.21 +0.2
800,096 + AO356_03575 0.25 -0.4
800,096 + AO356_03575 0.25 +0.0
800,096 + AO356_03575 0.25 +0.1
800,097 - AO356_03575 0.25 +0.1
800,097 - AO356_03575 0.25 +0.1
800,097 - AO356_03575 0.25 -0.0
800,201 + AO356_03575 0.31 +0.8
800,202 - AO356_03575 0.31 -1.2
800,202 - AO356_03575 0.31 -0.2
800,202 - AO356_03575 0.31 +0.0
800,202 - AO356_03575 0.31 +0.6
800,236 + AO356_03575 0.33 -0.1
800,236 + AO356_03575 0.33 +0.1
800,600 + AO356_03575 0.53 +0.1
800,714 + AO356_03575 0.60 -0.0
800,715 - AO356_03575 0.60 +0.2
800,715 - AO356_03575 0.60 +0.4
800,715 - AO356_03575 0.60 +0.6
800,715 - AO356_03575 0.60 +0.0
800,715 - AO356_03575 0.60 +0.8
800,755 - AO356_03575 0.62 -0.5
800,867 + AO356_03575 0.68 +0.8
800,868 - AO356_03575 0.68 +0.9
800,868 - AO356_03575 0.68 +0.5
800,868 - AO356_03575 0.68 -0.1
800,868 - AO356_03575 0.68 -0.2
800,876 + AO356_03575 0.69 +0.0
800,876 + AO356_03575 0.69 -0.6
800,876 + AO356_03575 0.69 -0.7
800,876 + AO356_03575 0.69 +0.1
801,212 + AO356_03575 0.88 +0.4
801,212 + AO356_03575 0.88 -0.5
801,212 + AO356_03575 0.88 -0.5
801,212 + AO356_03575 0.88 -0.0
801,213 - AO356_03575 0.88 -0.3
801,213 - AO356_03575 0.88 +0.4
801,251 - -0.7
801,488 + -0.2
801,488 + -0.3
801,488 + +0.6
801,488 + +0.4
801,489 - -0.3
801,489 - +1.1
801,659 + AO356_03580 0.13 +0.1
801,659 + AO356_03580 0.13 -0.1
801,659 + AO356_03580 0.13 -0.1
801,659 + AO356_03580 0.13 +0.6
801,660 - AO356_03580 0.13 -0.2
801,833 + AO356_03580 0.23 -0.1
801,833 + AO356_03580 0.23 +0.7
801,834 - AO356_03580 0.23 +0.4
801,902 + AO356_03580 0.27 -0.3
802,100 + AO356_03580 0.38 +0.6
802,257 - AO356_03580 0.47 +0.3

Or see this region's nucleotide sequence