Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4508

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,370,857	-		Psyr_4506	0.67	+0.3
5,370,918	+		Psyr_4506	0.75	+0.7
5,370,918	+		Psyr_4506	0.75	-1.2
5,370,918	+		Psyr_4506	0.75	+1.4
5,370,918	+		Psyr_4506	0.75	-2.9
5,370,919	-		Psyr_4506	0.75	-0.7
5,370,919	-		Psyr_4506	0.75	-1.6
5,370,919	-		Psyr_4506	0.75	-0.1
5,370,919	-		Psyr_4506	0.75	-0.8
5,370,927	+		Psyr_4506	0.76	-1.0
5,370,927	+		Psyr_4506	0.76	-1.2
5,370,927	+		Psyr_4506	0.76	+1.1
5,370,927	+		Psyr_4506	0.76	-0.6
5,370,927	+		Psyr_4506	0.76	-0.7
5,370,927	+		Psyr_4506	0.76	+2.2
5,370,927	+		Psyr_4506	0.76	-1.8
5,370,927	+		Psyr_4506	0.76	+2.2
5,370,927	+		Psyr_4506	0.76	-0.4
5,370,928	-		Psyr_4506	0.76	-1.6
5,370,928	-		Psyr_4506	0.76	-1.7
5,370,928	-		Psyr_4506	0.76	+0.0
5,370,928	-		Psyr_4506	0.76	-1.2
5,370,937	+		Psyr_4506	0.77	+0.2
5,370,938	-		Psyr_4506	0.78	-1.2
5,370,938	-		Psyr_4506	0.78	-1.9
5,371,032	+				-0.5
5,371,032	+				-0.9
5,371,033	-				-1.0
5,371,033	-				-0.3
5,371,139	+				-1.0
5,371,139	+				-0.1
5,371,290	+		Psyr_4507	0.25	+5.1
5,371,291	-		Psyr_4507	0.25	+0.0
5,371,365	+		Psyr_4507	0.35	-2.5
5,371,366	-		Psyr_4507	0.35	-0.6
5,371,369	+		Psyr_4507	0.35	+1.5
5,371,369	+		Psyr_4507	0.35	-0.3
5,371,369	+		Psyr_4507	0.35	-1.4
5,371,370	-		Psyr_4507	0.36	-2.0
5,371,370	-		Psyr_4507	0.36	+2.6
5,371,370	-		Psyr_4507	0.36	+0.8
5,371,370	-		Psyr_4507	0.36	+0.9
5,371,370	-		Psyr_4507	0.36	+0.2
5,371,370	-		Psyr_4507	0.36	+0.8
5,371,408	+		Psyr_4507	0.41	-0.4
5,371,408	+		Psyr_4507	0.41	+0.4
5,371,408	+		Psyr_4507	0.41	-1.1
5,371,408	+		Psyr_4507	0.41	+0.1
5,371,408	+		Psyr_4507	0.41	-1.2
5,371,408	+		Psyr_4507	0.41	-2.5
5,371,408	+		Psyr_4507	0.41	+0.2
5,371,408	+		Psyr_4507	0.41	-1.7
5,371,408	+		Psyr_4507	0.41	-0.7
5,371,408	+		Psyr_4507	0.41	-0.7
5,371,408	+		Psyr_4507	0.41	-0.3
5,371,409	-		Psyr_4507	0.41	+2.0
5,371,409	-		Psyr_4507	0.41	+1.1
5,371,409	-		Psyr_4507	0.41	-0.1
5,371,409	-		Psyr_4507	0.41	+0.2
5,371,409	-		Psyr_4507	0.41	+0.3
5,371,409	-		Psyr_4507	0.41	-0.4
5,371,409	-		Psyr_4507	0.41	+1.2
5,371,409	-		Psyr_4507	0.41	+0.4
5,371,409	-		Psyr_4507	0.41	-0.7
5,371,409	-		Psyr_4507	0.41	+1.1
5,371,409	-		Psyr_4507	0.41	+0.5
5,371,409	-		Psyr_4507	0.41	+0.8
5,371,409	-		Psyr_4507	0.41	-0.2
5,371,462	+		Psyr_4507	0.48	+1.3
5,371,463	-		Psyr_4507	0.48	+2.4
5,371,463	-		Psyr_4507	0.48	-1.0
5,371,693	+		Psyr_4507	0.79	-0.8
5,371,693	+		Psyr_4507	0.79	+0.3
5,371,693	+		Psyr_4507	0.79	+1.1
5,371,694	-		Psyr_4507	0.79	+0.3
5,371,812	-				-0.6
5,371,847	-				-1.6
5,371,847	-				+2.5
5,372,065	+		Psyr_4508	0.19	+0.3
5,372,118	+		Psyr_4508	0.24	-0.2
5,372,119	-		Psyr_4508	0.24	+0.4
5,372,175	-		Psyr_4508	0.29	+2.4
5,372,277	-		Psyr_4508	0.39	+1.7
5,372,293	-		Psyr_4508	0.40	+0.1
5,372,382	+		Psyr_4508	0.48	+0.2
5,372,403	+		Psyr_4508	0.50	+1.8
5,372,413	+		Psyr_4508	0.51	-0.2
5,372,413	+		Psyr_4508	0.51	-0.2
5,372,413	+		Psyr_4508	0.51	+1.6
5,372,413	+		Psyr_4508	0.51	+0.7
5,372,413	+		Psyr_4508	0.51	+1.3
5,372,413	+		Psyr_4508	0.51	+0.2
5,372,413	+		Psyr_4508	0.51	+2.1
5,372,413	+		Psyr_4508	0.51	-0.9
5,372,414	-		Psyr_4508	0.51	+0.5
5,372,414	-		Psyr_4508	0.51	+0.7
5,372,414	-		Psyr_4508	0.51	-2.1
5,372,414	-		Psyr_4508	0.51	+1.3
5,372,414	-		Psyr_4508	0.51	-1.7
5,372,414	-		Psyr_4508	0.51	+2.4
5,372,460	+		Psyr_4508	0.55	+0.5
5,372,460	+		Psyr_4508	0.55	-0.7
5,372,460	+		Psyr_4508	0.55	+0.1
5,372,460	+		Psyr_4508	0.55	+0.6
5,372,560	+		Psyr_4508	0.64	-0.8
5,372,628	-		Psyr_4508	0.70	+0.4
5,372,739	+		Psyr_4508	0.80	+2.0
5,372,739	+		Psyr_4508	0.80	+6.1
5,372,739	+		Psyr_4508	0.80	-1.6
5,372,739	+		Psyr_4508	0.80	+1.3
5,372,739	+		Psyr_4508	0.80	+0.6
5,372,739	+		Psyr_4508	0.80	-0.6
5,372,740	-		Psyr_4508	0.80	-0.1
5,372,740	-		Psyr_4508	0.80	+1.7
5,372,740	-		Psyr_4508	0.80	+0.2
5,372,740	-		Psyr_4508	0.80	+1.3
5,372,740	-		Psyr_4508	0.80	+0.3
5,372,740	-		Psyr_4508	0.80	+0.7
5,372,740	-		Psyr_4508	0.80	+0.4
5,372,740	-		Psyr_4508	0.80	-0.7
5,372,741	+		Psyr_4508	0.80	+0.4
5,372,741	+		Psyr_4508	0.80	-0.5
5,372,748	+		Psyr_4508	0.81	+0.1
5,372,784	-		Psyr_4508	0.84	+0.0
5,372,784	-		Psyr_4508	0.84	-1.3
5,372,790	-		Psyr_4508	0.85	-0.7
5,372,792	+		Psyr_4508	0.85	+0.2
5,372,792	+		Psyr_4508	0.85	+1.0
5,372,792	+		Psyr_4508	0.85	-2.9
5,372,792	+		Psyr_4508	0.85	-1.8
5,372,793	-		Psyr_4508	0.85	+0.1
5,372,958	+				-0.9
5,372,959	-				+3.6
5,372,987	+				+1.4
5,372,987	+				-1.1
5,372,987	+				-1.9
5,372,988	-				+0.6
5,372,988	-				-0.1
5,373,083	+				-1.0
5,373,083	+				-0.0
5,373,083	+				+0.9
5,373,083	+				+0.7
5,373,083	+				-0.3
5,373,083	+				-1.1
5,373,083	+				+0.9
5,373,084	-				+0.1
5,373,084	-				+1.7
5,373,084	-				+0.5
5,373,084	-				-1.2
5,373,084	-				-1.1
5,373,084	-				-0.1
5,373,084	-				+0.2
5,373,084	-				+1.2
5,373,084	-				+1.4
5,373,085	+				-0.7
5,373,086	-				+0.7
5,373,086	-				+0.4
5,373,086	-				+0.5
5,373,118	-				+0.8
5,373,118	-				-1.2
5,373,132	+				-1.3
5,373,134	+				-0.3
5,373,134	+				+1.3
5,373,135	-				+1.1
5,373,204	+				+0.2
5,373,230	+				-0.3
5,373,248	+				+1.2
5,373,316	-				+1.2
5,373,327	+				+1.6
5,373,361	+				-0.7
5,373,362	-				-2.6
5,373,368	+				+0.5
5,373,369	-				+0.8
5,373,455	-				-0.7
5,373,455	-				-1.4
5,373,455	-				+0.4
5,373,455	-				+0.6
5,373,455	-				+0.9
5,373,479	+				-0.7
5,373,479	+				+1.0
5,373,479	+				+1.6
5,373,479	+				-0.2
5,373,479	+				+0.6
5,373,479	+				-0.2
5,373,479	+				-1.0
5,373,480	-				+0.0
5,373,480	-				-1.3
5,373,480	-				-2.9
5,373,480	-				+0.3
5,373,480	-				+1.0
5,373,480	-				+2.3
5,373,480	-				+1.0
5,373,480	-				-0.1
5,373,480	-				-1.5
5,373,480	-				+0.4
5,373,480	-				+1.6
5,373,480	-				+1.6
5,373,480	-				+1.7
5,373,480	-				+1.7
5,373,493	+				+4.4
5,373,494	-				-0.7
5,373,494	-				+0.4
5,373,494	-				-1.1
5,373,512	-				-0.3
5,373,549	+		Psyr_4509	0.12	-1.1
5,373,550	-		Psyr_4509	0.12	+0.7
5,373,560	+		Psyr_4509	0.14	+0.9
5,373,560	+		Psyr_4509	0.14	+0.6
5,373,560	+		Psyr_4509	0.14	+0.7
5,373,560	+		Psyr_4509	0.14	-0.7
5,373,560	+		Psyr_4509	0.14	+0.4
5,373,560	+		Psyr_4509	0.14	-0.1
5,373,560	+		Psyr_4509	0.14	+0.0
5,373,560	+		Psyr_4509	0.14	-0.9
5,373,560	+		Psyr_4509	0.14	+1.1
5,373,561	-		Psyr_4509	0.14	+0.2
5,373,561	-		Psyr_4509	0.14	-0.6
5,373,561	-		Psyr_4509	0.14	-1.7
5,373,561	-		Psyr_4509	0.14	+0.3
5,373,608	-		Psyr_4509	0.21	+0.8
5,373,622	-		Psyr_4509	0.23	-0.6
5,373,657	+		Psyr_4509	0.28	-0.7
5,373,657	+		Psyr_4509	0.28	-0.8
5,373,657	+		Psyr_4509	0.28	+0.3
5,373,657	+		Psyr_4509	0.28	-1.4
5,373,657	+		Psyr_4509	0.28	+0.6
5,373,658	-		Psyr_4509	0.29	+1.3
5,373,658	-		Psyr_4509	0.29	+0.3
5,373,680	+		Psyr_4509	0.32	+1.3
5,373,680	+		Psyr_4509	0.32	+0.2
5,373,680	+		Psyr_4509	0.32	-0.4
5,373,681	-		Psyr_4509	0.32	-2.1
5,373,681	-		Psyr_4509	0.32	+3.1
5,373,744	-		Psyr_4509	0.42	+0.2
5,373,744	-		Psyr_4509	0.42	-1.1
5,373,744	-		Psyr_4509	0.42	+0.8
5,373,745	+		Psyr_4509	0.42	+0.1
5,373,745	+		Psyr_4509	0.42	-1.7
5,373,745	+		Psyr_4509	0.42	+2.2
5,373,745	+		Psyr_4509	0.42	-0.4
5,373,746	-		Psyr_4509	0.42	-0.1
5,373,746	-		Psyr_4509	0.42	-1.1
5,373,793	-		Psyr_4509	0.49	+0.5
5,373,797	+		Psyr_4509	0.50	+1.1
5,373,797	+		Psyr_4509	0.50	-0.8
5,373,798	-		Psyr_4509	0.50	-1.6
5,373,839	+		Psyr_4509	0.56	+0.5
5,373,864	-		Psyr_4509	0.60	-0.7
5,373,887	+		Psyr_4509	0.63	+0.8
5,373,888	-		Psyr_4509	0.64	+0.5