Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4505

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4503 and Psyr_4504 overlap by 4 nucleotidesPsyr_4504 and Psyr_4505 overlap by 4 nucleotidesPsyr_4505 and Psyr_4506 are separated by 6 nucleotidesPsyr_4506 and Psyr_4507 overlap by 4 nucleotides Psyr_4503: Psyr_4503 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 5,367,454 to 5,368,347 _4503 Psyr_4504: Psyr_4504 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 5,368,344 to 5,369,237 _4504 Psyr_4505: Psyr_4505 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 5,369,234 to 5,370,340 _4505 Psyr_4506: Psyr_4506 - Glycerophosphodiester phosphodiesterase, at 5,370,347 to 5,371,108 _4506 Psyr_4507: Psyr_4507 - Inositol monophosphatase, at 5,371,105 to 5,371,848 _4507 Position (kb) 5369 5370 5371Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5368.380 kb on + strandat 5368.380 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.429 kb on + strandat 5368.429 kb on + strandat 5368.429 kb on + strandat 5368.635 kb on + strand, within Psyr_4504at 5368.635 kb on + strand, within Psyr_4504at 5368.635 kb on + strand, within Psyr_4504at 5368.635 kb on + strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.705 kb on + strand, within Psyr_4504at 5368.722 kb on + strand, within Psyr_4504at 5368.722 kb on + strand, within Psyr_4504at 5368.722 kb on + strand, within Psyr_4504at 5368.722 kb on + strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.822 kb on - strand, within Psyr_4504at 5368.885 kb on - strand, within Psyr_4504at 5369.031 kb on + strand, within Psyr_4504at 5369.032 kb on - strand, within Psyr_4504at 5369.032 kb on - strand, within Psyr_4504at 5369.032 kb on - strand, within Psyr_4504at 5369.032 kb on - strand, within Psyr_4504at 5369.251 kb on + strandat 5369.251 kb on + strandat 5369.252 kb on - strandat 5369.254 kb on + strandat 5369.254 kb on + strandat 5369.254 kb on + strandat 5369.254 kb on + strandat 5369.255 kb on - strandat 5369.255 kb on - strandat 5369.255 kb on - strandat 5369.272 kb on + strandat 5369.353 kb on + strand, within Psyr_4505at 5369.510 kb on + strand, within Psyr_4505at 5369.511 kb on - strand, within Psyr_4505at 5369.511 kb on - strand, within Psyr_4505at 5369.511 kb on - strand, within Psyr_4505at 5369.637 kb on + strand, within Psyr_4505at 5369.638 kb on - strand, within Psyr_4505at 5369.825 kb on + strand, within Psyr_4505at 5369.825 kb on + strand, within Psyr_4505at 5369.825 kb on + strand, within Psyr_4505at 5369.825 kb on + strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.826 kb on - strand, within Psyr_4505at 5369.924 kb on + strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5369.925 kb on - strand, within Psyr_4505at 5370.179 kb on + strand, within Psyr_4505at 5370.179 kb on + strand, within Psyr_4505at 5370.179 kb on + strand, within Psyr_4505at 5370.180 kb on - strand, within Psyr_4505at 5370.407 kb on + strandat 5370.407 kb on + strandat 5370.407 kb on + strandat 5370.407 kb on + strandat 5370.408 kb on - strandat 5370.408 kb on - strandat 5370.580 kb on + strand, within Psyr_4506at 5370.835 kb on - strand, within Psyr_4506at 5370.846 kb on + strand, within Psyr_4506at 5370.847 kb on - strand, within Psyr_4506at 5370.847 kb on - strand, within Psyr_4506at 5370.857 kb on - strand, within Psyr_4506at 5370.918 kb on + strand, within Psyr_4506at 5370.918 kb on + strand, within Psyr_4506at 5370.918 kb on + strand, within Psyr_4506at 5370.918 kb on + strand, within Psyr_4506at 5370.919 kb on - strand, within Psyr_4506at 5370.919 kb on - strand, within Psyr_4506at 5370.919 kb on - strand, within Psyr_4506at 5370.919 kb on - strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.927 kb on + strand, within Psyr_4506at 5370.928 kb on - strand, within Psyr_4506at 5370.928 kb on - strand, within Psyr_4506at 5370.928 kb on - strand, within Psyr_4506at 5370.928 kb on - strand, within Psyr_4506at 5370.937 kb on + strand, within Psyr_4506at 5370.938 kb on - strand, within Psyr_4506at 5370.938 kb on - strand, within Psyr_4506at 5371.032 kb on + strandat 5371.032 kb on + strandat 5371.033 kb on - strandat 5371.033 kb on - strandat 5371.139 kb on + strandat 5371.139 kb on + strandat 5371.290 kb on + strand, within Psyr_4507at 5371.291 kb on - strand, within Psyr_4507

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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5,368,380 + +1.0
5,368,380 + +0.1
5,368,425 + +0.2
5,368,425 + +1.6
5,368,425 + +0.7
5,368,425 + +0.7
5,368,425 + +1.6
5,368,425 + +1.2
5,368,425 + -2.3
5,368,425 + -0.5
5,368,425 + -0.2
5,368,426 - -0.3
5,368,426 - -0.5
5,368,426 - -0.3
5,368,426 - -0.7
5,368,426 - +0.8
5,368,426 - +0.1
5,368,426 - +1.0
5,368,426 - +3.6
5,368,426 - +0.6
5,368,426 - +0.9
5,368,429 + -0.4
5,368,429 + +2.6
5,368,429 + -0.2
5,368,635 + Psyr_4504 0.33 -0.0
5,368,635 + Psyr_4504 0.33 +0.4
5,368,635 + Psyr_4504 0.33 +0.0
5,368,635 + Psyr_4504 0.33 +0.6
5,368,636 - Psyr_4504 0.33 -0.4
5,368,636 - Psyr_4504 0.33 -1.2
5,368,636 - Psyr_4504 0.33 -0.2
5,368,636 - Psyr_4504 0.33 -1.5
5,368,636 - Psyr_4504 0.33 +0.0
5,368,636 - Psyr_4504 0.33 -1.5
5,368,705 + Psyr_4504 0.40 +0.1
5,368,722 + Psyr_4504 0.42 -0.1
5,368,722 + Psyr_4504 0.42 -0.4
5,368,722 + Psyr_4504 0.42 +0.0
5,368,722 + Psyr_4504 0.42 -0.3
5,368,723 - Psyr_4504 0.42 +0.6
5,368,723 - Psyr_4504 0.42 +0.1
5,368,723 - Psyr_4504 0.42 +0.3
5,368,723 - Psyr_4504 0.42 +0.6
5,368,723 - Psyr_4504 0.42 -1.1
5,368,822 - Psyr_4504 0.53 +1.4
5,368,885 - Psyr_4504 0.61 +0.0
5,369,031 + Psyr_4504 0.77 -0.6
5,369,032 - Psyr_4504 0.77 -1.4
5,369,032 - Psyr_4504 0.77 +0.6
5,369,032 - Psyr_4504 0.77 +1.0
5,369,032 - Psyr_4504 0.77 -0.5
5,369,251 + +0.4
5,369,251 + +1.9
5,369,252 - +0.3
5,369,254 + +0.3
5,369,254 + -0.5
5,369,254 + +1.0
5,369,254 + +0.2
5,369,255 - -3.1
5,369,255 - +0.2
5,369,255 - -0.2
5,369,272 + -1.4
5,369,353 + Psyr_4505 0.11 +0.0
5,369,510 + Psyr_4505 0.25 -0.5
5,369,511 - Psyr_4505 0.25 +1.0
5,369,511 - Psyr_4505 0.25 +1.7
5,369,511 - Psyr_4505 0.25 +0.4
5,369,637 + Psyr_4505 0.36 -0.4
5,369,638 - Psyr_4505 0.36 +0.1
5,369,825 + Psyr_4505 0.53 +0.1
5,369,825 + Psyr_4505 0.53 +0.4
5,369,825 + Psyr_4505 0.53 +0.2
5,369,825 + Psyr_4505 0.53 +0.1
5,369,826 - Psyr_4505 0.53 -0.2
5,369,826 - Psyr_4505 0.53 -0.1
5,369,826 - Psyr_4505 0.53 +0.2
5,369,826 - Psyr_4505 0.53 +0.7
5,369,826 - Psyr_4505 0.53 +1.9
5,369,826 - Psyr_4505 0.53 -0.9
5,369,826 - Psyr_4505 0.53 -1.2
5,369,924 + Psyr_4505 0.62 -0.3
5,369,925 - Psyr_4505 0.62 +0.5
5,369,925 - Psyr_4505 0.62 -0.5
5,369,925 - Psyr_4505 0.62 -0.3
5,369,925 - Psyr_4505 0.62 +0.9
5,369,925 - Psyr_4505 0.62 -0.4
5,370,179 + Psyr_4505 0.85 +0.6
5,370,179 + Psyr_4505 0.85 +0.6
5,370,179 + Psyr_4505 0.85 +0.9
5,370,180 - Psyr_4505 0.85 +3.0
5,370,407 + +3.8
5,370,407 + +0.6
5,370,407 + -0.8
5,370,407 + -0.1
5,370,408 - -1.2
5,370,408 - +1.3
5,370,580 + Psyr_4506 0.31 +0.8
5,370,835 - Psyr_4506 0.64 +0.5
5,370,846 + Psyr_4506 0.65 -2.1
5,370,847 - Psyr_4506 0.66 -1.0
5,370,847 - Psyr_4506 0.66 +0.3
5,370,857 - Psyr_4506 0.67 +0.3
5,370,918 + Psyr_4506 0.75 +0.7
5,370,918 + Psyr_4506 0.75 -1.2
5,370,918 + Psyr_4506 0.75 +1.4
5,370,918 + Psyr_4506 0.75 -2.9
5,370,919 - Psyr_4506 0.75 -0.7
5,370,919 - Psyr_4506 0.75 -1.6
5,370,919 - Psyr_4506 0.75 -0.1
5,370,919 - Psyr_4506 0.75 -0.8
5,370,927 + Psyr_4506 0.76 -1.0
5,370,927 + Psyr_4506 0.76 -1.2
5,370,927 + Psyr_4506 0.76 +1.1
5,370,927 + Psyr_4506 0.76 -0.6
5,370,927 + Psyr_4506 0.76 -0.7
5,370,927 + Psyr_4506 0.76 +2.2
5,370,927 + Psyr_4506 0.76 -1.8
5,370,927 + Psyr_4506 0.76 +2.2
5,370,927 + Psyr_4506 0.76 -0.4
5,370,928 - Psyr_4506 0.76 -1.6
5,370,928 - Psyr_4506 0.76 -1.7
5,370,928 - Psyr_4506 0.76 +0.0
5,370,928 - Psyr_4506 0.76 -1.2
5,370,937 + Psyr_4506 0.77 +0.2
5,370,938 - Psyr_4506 0.78 -1.2
5,370,938 - Psyr_4506 0.78 -1.9
5,371,032 + -0.5
5,371,032 + -0.9
5,371,033 - -1.0
5,371,033 - -0.3
5,371,139 + -1.0
5,371,139 + -0.1
5,371,290 + Psyr_4507 0.25 +5.1
5,371,291 - Psyr_4507 0.25 +0.0

Or see this region's nucleotide sequence