Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4382 and Psyr_4383 are separated by 80 nucleotides Psyr_4383 and Psyr_4384 overlap by 7 nucleotides Psyr_4384 and Psyr_4385 are separated by 284 nucleotides
Psyr_4382: Psyr_4382 - Uncharacterized protein conserved in bacteria-like protein, at 5,238,914 to 5,240,023
_4382
Psyr_4383: Psyr_4383 - esterase/lipase/thioesterase family protein, at 5,240,104 to 5,241,006
_4383
Psyr_4384: Psyr_4384 - Multi antimicrobial extrusion protein MatE, at 5,241,000 to 5,242,340
_4384
Psyr_4385: Psyr_4385 - Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal, at 5,242,625 to 5,247,583
_4385
Position (kb) 5240
5241
5242
5243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5240.026 kb on + strand at 5240.027 kb on - strand at 5240.082 kb on + strand at 5240.082 kb on + strand at 5240.082 kb on + strand at 5240.082 kb on + strand at 5240.083 kb on - strand at 5240.083 kb on - strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.221 kb on + strand, within Psyr_4383 at 5240.222 kb on - strand, within Psyr_4383 at 5240.222 kb on - strand, within Psyr_4383 at 5240.222 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.253 kb on + strand, within Psyr_4383 at 5240.253 kb on + strand, within Psyr_4383 at 5240.254 kb on - strand, within Psyr_4383 at 5240.254 kb on - strand, within Psyr_4383 at 5240.254 kb on - strand, within Psyr_4383 at 5240.266 kb on + strand, within Psyr_4383 at 5240.315 kb on - strand, within Psyr_4383 at 5240.417 kb on - strand, within Psyr_4383 at 5240.426 kb on + strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.495 kb on - strand, within Psyr_4383 at 5240.545 kb on + strand, within Psyr_4383 at 5240.546 kb on - strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5241.074 kb on + strand at 5241.075 kb on - strand at 5241.097 kb on - strand at 5241.127 kb on + strand at 5241.127 kb on + strand at 5241.127 kb on + strand at 5241.127 kb on + strand at 5241.171 kb on - strand, within Psyr_4384 at 5241.221 kb on - strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.265 kb on + strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.266 kb on - strand, within Psyr_4384 at 5241.354 kb on + strand, within Psyr_4384 at 5241.408 kb on - strand, within Psyr_4384 at 5241.622 kb on - strand, within Psyr_4384 at 5241.886 kb on + strand, within Psyr_4384 at 5241.886 kb on + strand, within Psyr_4384 at 5241.886 kb on + strand, within Psyr_4384 at 5241.887 kb on - strand, within Psyr_4384 at 5242.157 kb on + strand, within Psyr_4384 at 5242.157 kb on + strand, within Psyr_4384 at 5242.157 kb on + strand, within Psyr_4384 at 5242.157 kb on + strand, within Psyr_4384 at 5242.158 kb on - strand, within Psyr_4384 at 5242.158 kb on - strand, within Psyr_4384 at 5242.158 kb on - strand, within Psyr_4384 at 5242.159 kb on + strand, within Psyr_4384 at 5242.159 kb on + strand, within Psyr_4384 at 5242.159 kb on + strand, within Psyr_4384 at 5242.159 kb on + strand, within Psyr_4384 at 5242.160 kb on - strand, within Psyr_4384 at 5242.160 kb on - strand, within Psyr_4384 at 5242.160 kb on - strand, within Psyr_4384 at 5242.257 kb on - strand at 5242.334 kb on + strand at 5242.334 kb on + strand at 5242.334 kb on + strand at 5242.334 kb on + strand at 5242.334 kb on + strand at 5242.334 kb on + strand at 5242.335 kb on - strand at 5242.335 kb on - strand at 5242.335 kb on - strand at 5242.335 kb on - strand at 5242.335 kb on - strand at 5242.367 kb on + strand at 5242.367 kb on + strand at 5242.368 kb on - strand at 5242.368 kb on - strand at 5242.403 kb on + strand at 5242.444 kb on + strand at 5242.520 kb on + strand at 5242.520 kb on + strand at 5242.520 kb on + strand at 5242.521 kb on - strand at 5242.521 kb on - strand at 5242.521 kb on - strand at 5242.530 kb on - strand at 5242.545 kb on + strand at 5242.545 kb on + strand at 5242.555 kb on + strand at 5242.555 kb on + strand at 5242.555 kb on + strand at 5242.556 kb on - strand at 5242.556 kb on - strand at 5242.556 kb on - strand at 5242.573 kb on + strand at 5242.573 kb on + strand at 5242.573 kb on + strand at 5242.574 kb on - strand at 5242.574 kb on - strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.576 kb on + strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.577 kb on - strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.595 kb on + strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.596 kb on - strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.597 kb on + strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.598 kb on - strand at 5242.599 kb on + strand at 5242.599 kb on + strand at 5242.600 kb on - strand at 5242.600 kb on - strand at 5242.600 kb on - strand at 5242.600 kb on - strand at 5242.600 kb on - strand at 5242.610 kb on + strand at 5242.614 kb on + strand at 5242.614 kb on + strand at 5242.642 kb on - strand at 5242.708 kb on + strand at 5242.708 kb on + strand at 5242.920 kb on + strand at 5242.920 kb on + strand at 5242.920 kb on + strand at 5242.921 kb on - strand at 5242.989 kb on + strand at 5242.990 kb on - strand at 5242.990 kb on - strand at 5243.081 kb on + strand at 5243.081 kb on + strand at 5243.082 kb on - strand at 5243.285 kb on + strand, within Psyr_4385 at 5243.286 kb on - strand, within Psyr_4385 at 5243.286 kb on - strand, within Psyr_4385 at 5243.286 kb on - strand, within Psyr_4385 at 5243.324 kb on + strand, within Psyr_4385 at 5243.324 kb on + strand, within Psyr_4385 at 5243.325 kb on - strand, within Psyr_4385 at 5243.325 kb on - strand, within Psyr_4385
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,240,026 + -0.2 5,240,027 - +0.6 5,240,082 + +1.1 5,240,082 + +1.6 5,240,082 + +0.4 5,240,082 + +1.6 5,240,083 - +0.8 5,240,083 - -0.3 5,240,187 + -0.7 5,240,187 + -2.2 5,240,187 + +0.8 5,240,187 + -1.3 5,240,187 + -0.8 5,240,187 + -0.0 5,240,187 + -0.1 5,240,188 - +1.2 5,240,188 - -2.5 5,240,188 - +0.3 5,240,188 - -0.0 5,240,221 + Psyr_4383 0.13 -0.8 5,240,222 - Psyr_4383 0.13 +0.8 5,240,222 - Psyr_4383 0.13 -0.2 5,240,222 - Psyr_4383 0.13 +1.0 5,240,251 - Psyr_4383 0.16 -2.0 5,240,251 - Psyr_4383 0.16 +0.3 5,240,251 - Psyr_4383 0.16 +1.1 5,240,251 - Psyr_4383 0.16 -0.8 5,240,251 - Psyr_4383 0.16 +1.6 5,240,253 + Psyr_4383 0.17 -0.1 5,240,253 + Psyr_4383 0.17 -0.9 5,240,254 - Psyr_4383 0.17 +1.6 5,240,254 - Psyr_4383 0.17 -1.4 5,240,254 - Psyr_4383 0.17 +0.4 5,240,266 + Psyr_4383 0.18 +2.1 5,240,315 - Psyr_4383 0.23 -0.9 5,240,417 - Psyr_4383 0.35 -0.9 5,240,426 + Psyr_4383 0.36 -0.9 5,240,427 - Psyr_4383 0.36 -0.2 5,240,427 - Psyr_4383 0.36 -0.9 5,240,427 - Psyr_4383 0.36 -0.8 5,240,427 - Psyr_4383 0.36 +0.2 5,240,495 - Psyr_4383 0.43 +1.8 5,240,545 + Psyr_4383 0.49 -2.0 5,240,546 - Psyr_4383 0.49 +1.6 5,240,854 + Psyr_4383 0.83 -0.2 5,240,854 + Psyr_4383 0.83 -0.3 5,240,854 + Psyr_4383 0.83 -0.0 5,240,854 + Psyr_4383 0.83 -0.2 5,241,074 + +0.6 5,241,075 - -0.8 5,241,097 - -0.1 5,241,127 + +0.1 5,241,127 + +0.2 5,241,127 + +0.9 5,241,127 + +0.3 5,241,171 - Psyr_4384 0.13 -0.0 5,241,221 - Psyr_4384 0.16 +1.0 5,241,265 + Psyr_4384 0.20 +5.1 5,241,265 + Psyr_4384 0.20 -1.6 5,241,265 + Psyr_4384 0.20 -2.2 5,241,265 + Psyr_4384 0.20 -1.4 5,241,265 + Psyr_4384 0.20 +1.6 5,241,265 + Psyr_4384 0.20 +0.3 5,241,265 + Psyr_4384 0.20 -1.4 5,241,265 + Psyr_4384 0.20 -0.6 5,241,265 + Psyr_4384 0.20 +1.6 5,241,265 + Psyr_4384 0.20 +0.9 5,241,265 + Psyr_4384 0.20 +0.4 5,241,265 + Psyr_4384 0.20 -2.6 5,241,265 + Psyr_4384 0.20 -0.0 5,241,265 + Psyr_4384 0.20 +1.7 5,241,265 + Psyr_4384 0.20 +2.3 5,241,266 - Psyr_4384 0.20 +0.1 5,241,266 - Psyr_4384 0.20 +0.5 5,241,266 - Psyr_4384 0.20 -0.4 5,241,266 - Psyr_4384 0.20 +0.8 5,241,266 - Psyr_4384 0.20 -0.2 5,241,266 - Psyr_4384 0.20 +0.9 5,241,266 - Psyr_4384 0.20 -0.1 5,241,266 - Psyr_4384 0.20 +0.5 5,241,266 - Psyr_4384 0.20 -0.0 5,241,354 + Psyr_4384 0.26 -0.1 5,241,408 - Psyr_4384 0.30 +0.7 5,241,622 - Psyr_4384 0.46 -0.8 5,241,886 + Psyr_4384 0.66 +1.2 5,241,886 + Psyr_4384 0.66 -0.1 5,241,886 + Psyr_4384 0.66 -0.0 5,241,887 - Psyr_4384 0.66 -0.8 5,242,157 + Psyr_4384 0.86 +0.3 5,242,157 + Psyr_4384 0.86 +1.6 5,242,157 + Psyr_4384 0.86 -0.0 5,242,157 + Psyr_4384 0.86 +0.1 5,242,158 - Psyr_4384 0.86 -0.2 5,242,158 - Psyr_4384 0.86 +0.5 5,242,158 - Psyr_4384 0.86 +0.8 5,242,159 + Psyr_4384 0.86 +1.5 5,242,159 + Psyr_4384 0.86 -1.6 5,242,159 + Psyr_4384 0.86 -1.2 5,242,159 + Psyr_4384 0.86 +0.6 5,242,160 - Psyr_4384 0.87 +0.6 5,242,160 - Psyr_4384 0.87 +0.7 5,242,160 - Psyr_4384 0.87 -1.8 5,242,257 - +2.3 5,242,334 + +0.2 5,242,334 + -0.8 5,242,334 + +0.4 5,242,334 + +2.8 5,242,334 + +1.7 5,242,334 + +0.7 5,242,335 - +0.7 5,242,335 - +0.6 5,242,335 - -3.0 5,242,335 - -0.3 5,242,335 - -1.0 5,242,367 + -0.0 5,242,367 + +1.1 5,242,368 - -1.1 5,242,368 - -0.4 5,242,403 + -2.4 5,242,444 + +0.8 5,242,520 + +0.2 5,242,520 + -1.6 5,242,520 + +1.8 5,242,521 - -1.5 5,242,521 - +2.7 5,242,521 - +0.1 5,242,530 - +3.9 5,242,545 + -1.0 5,242,545 + +2.0 5,242,555 + -0.4 5,242,555 + -0.0 5,242,555 + +0.1 5,242,556 - +0.8 5,242,556 - -0.6 5,242,556 - +0.4 5,242,573 + -0.8 5,242,573 + -0.1 5,242,573 + +2.5 5,242,574 - -2.3 5,242,574 - -0.2 5,242,576 + -0.8 5,242,576 + +2.0 5,242,576 + +0.2 5,242,576 + -2.0 5,242,576 + -0.4 5,242,576 + -0.5 5,242,576 + -2.8 5,242,576 + +1.6 5,242,576 + -1.9 5,242,576 + +0.6 5,242,576 + +1.9 5,242,576 + -1.6 5,242,576 + +0.4 5,242,576 + +0.8 5,242,576 + -1.0 5,242,576 + -0.2 5,242,576 + +2.0 5,242,576 + -0.0 5,242,576 + -0.2 5,242,576 + -1.9 5,242,576 + +0.6 5,242,576 + -0.4 5,242,576 + +0.8 5,242,576 + -0.4 5,242,576 + +1.5 5,242,576 + -0.4 5,242,576 + +1.6 5,242,576 + -1.0 5,242,577 - +2.1 5,242,577 - -0.7 5,242,577 - -1.1 5,242,577 - -1.0 5,242,577 - +1.1 5,242,577 - -1.2 5,242,577 - -1.6 5,242,577 - -0.5 5,242,577 - -0.1 5,242,577 - -0.0 5,242,577 - -0.6 5,242,577 - -0.1 5,242,577 - +1.1 5,242,577 - -0.4 5,242,595 + -0.3 5,242,595 + -2.1 5,242,595 + +0.3 5,242,595 + -0.4 5,242,595 + -1.2 5,242,595 + -0.9 5,242,595 + +1.7 5,242,595 + -0.9 5,242,595 + -0.8 5,242,595 + +1.1 5,242,595 + -0.8 5,242,595 + +0.1 5,242,595 + -0.1 5,242,596 - +0.3 5,242,596 - -1.4 5,242,596 - -1.6 5,242,596 - +1.4 5,242,596 - -2.1 5,242,596 - +0.5 5,242,596 - -0.4 5,242,596 - +0.6 5,242,596 - -0.0 5,242,596 - -0.6 5,242,596 - -2.0 5,242,597 + +1.3 5,242,597 + -0.4 5,242,597 + -0.9 5,242,597 + +0.8 5,242,597 + -0.7 5,242,597 + -0.0 5,242,597 + -1.1 5,242,597 + +1.7 5,242,597 + -0.4 5,242,597 + -1.4 5,242,597 + -0.4 5,242,597 + -0.4 5,242,597 + +2.2 5,242,597 + +0.6 5,242,597 + -2.1 5,242,597 + -0.8 5,242,597 + -0.4 5,242,597 + -0.0 5,242,598 - +1.2 5,242,598 - -0.6 5,242,598 - -0.6 5,242,598 - +0.6 5,242,598 - -0.3 5,242,598 - +0.6 5,242,598 - -1.8 5,242,598 - +0.5 5,242,598 - +0.8 5,242,598 - +0.3 5,242,598 - -1.6 5,242,598 - -0.8 5,242,598 - +0.3 5,242,598 - -0.9 5,242,598 - -1.8 5,242,599 + -0.7 5,242,599 + +1.8 5,242,600 - -0.8 5,242,600 - -0.4 5,242,600 - -2.6 5,242,600 - +1.0 5,242,600 - +0.2 5,242,610 + -1.0 5,242,614 + -0.2 5,242,614 + -1.4 5,242,642 - +1.2 5,242,708 + +1.3 5,242,708 + -0.3 5,242,920 + -0.5 5,242,920 + -0.1 5,242,920 + -0.7 5,242,921 - -0.6 5,242,989 + -0.9 5,242,990 - -0.3 5,242,990 - -0.2 5,243,081 + -1.1 5,243,081 + +0.0 5,243,082 - -0.3 5,243,285 + Psyr_4385 0.13 +0.6 5,243,286 - Psyr_4385 0.13 +1.0 5,243,286 - Psyr_4385 0.13 -1.6 5,243,286 - Psyr_4385 0.13 -2.1 5,243,324 + Psyr_4385 0.14 +0.9 5,243,324 + Psyr_4385 0.14 -0.4 5,243,325 - Psyr_4385 0.14 +1.2 5,243,325 - Psyr_4385 0.14 +0.8
Or see this region's nucleotide sequence