Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3154

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
3,779,512	-		Psyr_3153	0.67	+1.1
3,779,512	-		Psyr_3153	0.67	+0.7
3,779,626	+		Psyr_3153	0.71	+0.4
3,779,626	+		Psyr_3153	0.71	-1.0
3,779,626	+		Psyr_3153	0.71	+1.6
3,779,626	+		Psyr_3153	0.71	+0.9
3,779,626	+		Psyr_3153	0.71	+0.3
3,779,626	+		Psyr_3153	0.71	-1.8
3,779,626	+		Psyr_3153	0.71	+1.2
3,779,626	+		Psyr_3153	0.71	+0.1
3,779,626	+		Psyr_3153	0.71	-0.5
3,779,627	-		Psyr_3153	0.71	-1.6
3,779,627	-		Psyr_3153	0.71	-0.5
3,779,627	-		Psyr_3153	0.71	+1.1
3,779,627	-		Psyr_3153	0.71	+1.1
3,779,627	-		Psyr_3153	0.71	+0.9
3,779,627	-		Psyr_3153	0.71	+4.3
3,779,627	-		Psyr_3153	0.71	-0.9
3,779,627	-		Psyr_3153	0.71	+0.2
3,779,693	-		Psyr_3153	0.74	-1.4
3,779,855	-		Psyr_3153	0.79	+0.1
3,779,938	+		Psyr_3153	0.82	-0.5
3,779,938	+		Psyr_3153	0.82	+0.1
3,779,938	+		Psyr_3153	0.82	+0.4
3,779,939	-		Psyr_3153	0.83	-0.6
3,779,939	-		Psyr_3153	0.83	+1.5
3,779,939	-		Psyr_3153	0.83	-1.7
3,779,994	+		Psyr_3153	0.85	-0.2
3,779,995	-		Psyr_3153	0.85	+0.3
3,780,064	+		Psyr_3153	0.87	+0.4
3,780,064	+		Psyr_3153	0.87	+4.5
3,780,064	+		Psyr_3153	0.87	-1.5
3,780,064	+		Psyr_3153	0.87	-0.1
3,780,064	+		Psyr_3153	0.87	-1.5
3,780,064	+		Psyr_3153	0.87	-1.5
3,780,064	+		Psyr_3153	0.87	+0.8
3,780,064	+		Psyr_3153	0.87	+0.4
3,780,064	+		Psyr_3153	0.87	-1.8
3,780,064	+		Psyr_3153	0.87	-1.6
3,780,065	-		Psyr_3153	0.87	+0.6
3,780,065	-		Psyr_3153	0.87	-0.7
3,780,065	-		Psyr_3153	0.87	-0.1
3,780,065	-		Psyr_3153	0.87	+1.3
3,780,065	-		Psyr_3153	0.87	-0.5
3,780,065	-		Psyr_3153	0.87	+1.1
3,780,065	-		Psyr_3153	0.87	-0.7
3,780,119	-		Psyr_3153	0.89	-1.3
3,780,395	+				+1.4
3,780,396	-				-0.1
3,780,396	-				+0.7
3,780,396	-				-0.6
3,780,396	-				+0.8
3,780,416	-				+1.4
3,780,416	-				+0.3
3,780,449	+				-0.5
3,780,449	+				+1.1
3,780,449	+				+0.3
3,780,450	-				-1.2
3,780,450	-				+0.4
3,780,450	-				-0.3
3,780,496	+				+1.1
3,780,496	+				+0.4
3,780,496	+				-1.7
3,780,496	+				-2.0
3,780,496	+				-1.7
3,780,496	+				+0.3
3,780,496	+				+0.5
3,780,496	+				-0.5
3,780,496	+				-0.3
3,780,496	+				+0.3
3,780,497	-				-0.1
3,780,497	-				-0.5
3,780,497	-				+1.4
3,780,497	-				-0.2
3,780,497	-				+0.3
3,780,497	-				+0.5
3,780,497	-				-0.7
3,780,497	-				+0.9
3,780,497	-				+0.9
3,780,497	-				-0.9
3,780,615	+		Psyr_3154	0.25	+0.1
3,780,616	-		Psyr_3154	0.25	+0.4
3,780,616	-		Psyr_3154	0.25	-0.9
3,780,616	-		Psyr_3154	0.25	-0.6
3,780,668	+		Psyr_3154	0.33	-0.2
3,780,750	+		Psyr_3154	0.46	+1.1
3,780,974	+		Psyr_3154	0.80	-1.0
3,780,976	+		Psyr_3154	0.81	-0.9
3,780,976	+		Psyr_3154	0.81	-2.9
3,780,976	+		Psyr_3154	0.81	+1.8
3,781,100	+				-0.9
3,781,101	-				-0.9
3,781,101	-				+0.3
3,781,133	-				-3.3
3,781,193	+				-0.1
3,781,194	-				+0.3
3,781,194	-				+0.4
3,781,485	+		Psyr_3155	0.50	-1.5
3,781,485	+		Psyr_3155	0.50	-0.2
3,781,485	+		Psyr_3155	0.50	+0.9
3,781,485	+		Psyr_3155	0.50	-1.5
3,781,485	+		Psyr_3155	0.50	-0.6
3,781,486	-		Psyr_3155	0.50	+0.3
3,781,486	-		Psyr_3155	0.50	-0.2
3,781,486	-		Psyr_3155	0.50	+0.1
3,781,486	-		Psyr_3155	0.50	-1.2
3,781,486	-		Psyr_3155	0.50	-1.1
3,781,542	+		Psyr_3155	0.61	+0.1
3,781,542	+		Psyr_3155	0.61	-0.0
3,781,542	+		Psyr_3155	0.61	+0.4
3,781,542	+		Psyr_3155	0.61	+1.2
3,781,542	+		Psyr_3155	0.61	-0.3
3,781,542	+		Psyr_3155	0.61	-0.8
3,781,543	-		Psyr_3155	0.61	+0.8
3,781,543	-		Psyr_3155	0.61	-1.5
3,781,543	-		Psyr_3155	0.61	-0.3
3,781,543	-		Psyr_3155	0.61	+0.1
3,781,543	-		Psyr_3155	0.61	+0.4
3,781,543	-		Psyr_3155	0.61	-0.7
3,781,543	-		Psyr_3155	0.61	+1.3
3,781,549	-		Psyr_3155	0.62	-0.2
3,781,582	+		Psyr_3155	0.68	-2.7
3,781,582	+		Psyr_3155	0.68	+0.1
3,781,582	+		Psyr_3155	0.68	-0.5
3,781,582	+		Psyr_3155	0.68	+0.3
3,781,582	+		Psyr_3155	0.68	+0.5
3,781,582	+		Psyr_3155	0.68	+0.4
3,781,582	+		Psyr_3155	0.68	-1.6
3,781,582	+		Psyr_3155	0.68	+0.7
3,781,582	+		Psyr_3155	0.68	+0.1
3,781,583	-		Psyr_3155	0.68	+1.3
3,781,583	-		Psyr_3155	0.68	-0.2
3,781,583	-		Psyr_3155	0.68	+0.9
3,781,583	-		Psyr_3155	0.68	+3.1
3,781,583	-		Psyr_3155	0.68	+0.8
3,781,583	-		Psyr_3155	0.68	+0.5
3,781,583	-		Psyr_3155	0.68	+1.8
3,781,583	-		Psyr_3155	0.68	-0.1
3,781,583	-		Psyr_3155	0.68	+1.8
3,781,584	+		Psyr_3155	0.69	+0.4
3,781,584	+		Psyr_3155	0.69	+0.3
3,781,584	+		Psyr_3155	0.69	-0.3
3,781,584	+		Psyr_3155	0.69	+0.6
3,781,584	+		Psyr_3155	0.69	+0.5
3,781,584	+		Psyr_3155	0.69	-0.2
3,781,584	+		Psyr_3155	0.69	+0.5
3,781,584	+		Psyr_3155	0.69	+1.1
3,781,584	+		Psyr_3155	0.69	+0.9
3,781,584	+		Psyr_3155	0.69	+0.1
3,781,585	-		Psyr_3155	0.69	-0.6
3,781,585	-		Psyr_3155	0.69	-0.3
3,781,585	-		Psyr_3155	0.69	+0.1
3,781,585	-				+2.1
3,781,585	-		Psyr_3155	0.69	-0.9
3,781,585	-		Psyr_3155	0.69	+1.8
3,781,585	-		Psyr_3155	0.69	-1.3
3,781,585	-		Psyr_3155	0.69	+0.1
3,781,585	-		Psyr_3155	0.69	-0.5
3,781,585	-		Psyr_3155	0.69	+3.0
3,781,585	-		Psyr_3155	0.69	-0.7
3,781,585	-		Psyr_3155	0.69	+1.2
3,781,674	-		Psyr_3155	0.85	-0.3
3,781,690	-		Psyr_3155	0.88	-1.5
3,781,701	-				-1.9
3,781,766	+				-1.1
3,781,767	-				+1.7
3,781,821	+				+0.7
3,781,822	-				-3.3
3,781,842	+				+0.7
3,782,037	+		Psyr_3156	0.27	-0.9
3,782,038	-		Psyr_3156	0.27	-0.8
3,782,054	+		Psyr_3156	0.29	-0.5
3,782,054	+		Psyr_3156	0.29	-0.0
3,782,054	+		Psyr_3156	0.29	-0.3
3,782,055	-		Psyr_3156	0.29	+0.1
3,782,055	-		Psyr_3156	0.29	+2.6
3,782,055	-		Psyr_3156	0.29	+0.5
3,782,068	-		Psyr_3156	0.30	-0.7