Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3150

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3147 and Psyr_3148 overlap by 1 nucleotidesPsyr_3148 and Psyr_3149 are separated by 8 nucleotidesPsyr_3149 and Psyr_3150 are separated by 25 nucleotidesPsyr_3150 and Psyr_3151 overlap by 4 nucleotides Psyr_3147: Psyr_3147 - general secretion pathway protein I, putative, at 3,772,677 to 3,773,048 _3147 Psyr_3148: Psyr_3148 - General secretion pathway protein H, at 3,773,048 to 3,773,482 _3148 Psyr_3149: Psyr_3149 - General secretion pathway protein G, at 3,773,491 to 3,773,922 _3149 Psyr_3150: Psyr_3150 - type II secretion system protein, at 3,773,948 to 3,775,150 _3150 Psyr_3151: Psyr_3151 - type II secretion system protein E (GspE), at 3,775,147 to 3,776,904 _3151 Position (kb) 3773 3774 3775 3776Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3773.452 kb on + strandat 3773.519 kb on + strandat 3773.552 kb on + strand, within Psyr_3149at 3773.553 kb on - strand, within Psyr_3149at 3773.726 kb on + strand, within Psyr_3149at 3773.726 kb on + strand, within Psyr_3149at 3773.727 kb on - strand, within Psyr_3149at 3773.735 kb on - strand, within Psyr_3149at 3773.735 kb on - strand, within Psyr_3149at 3773.735 kb on - strand, within Psyr_3149at 3773.777 kb on + strand, within Psyr_3149at 3773.778 kb on - strand, within Psyr_3149at 3773.842 kb on + strand, within Psyr_3149at 3773.842 kb on + strand, within Psyr_3149at 3773.913 kb on + strandat 3773.954 kb on - strandat 3774.592 kb on - strand, within Psyr_3150at 3774.646 kb on - strand, within Psyr_3150at 3774.718 kb on + strand, within Psyr_3150at 3774.718 kb on + strand, within Psyr_3150at 3774.719 kb on - strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strandat 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3775.344 kb on + strand, within Psyr_3151at 3775.345 kb on - strand, within Psyr_3151at 3775.388 kb on + strand, within Psyr_3151at 3775.538 kb on + strand, within Psyr_3151at 3775.539 kb on - strand, within Psyr_3151at 3775.573 kb on - strand, within Psyr_3151at 3775.847 kb on + strand, within Psyr_3151at 3775.847 kb on + strand, within Psyr_3151at 3775.848 kb on - strand, within Psyr_3151at 3775.848 kb on - strand, within Psyr_3151at 3775.848 kb on - strand, within Psyr_3151at 3775.848 kb on - strand, within Psyr_3151at 3775.848 kb on - strand, within Psyr_3151at 3775.849 kb on - strand, within Psyr_3151

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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3,773,452 + +0.3
3,773,519 + +0.1
3,773,552 + Psyr_3149 0.14 +0.4
3,773,553 - Psyr_3149 0.14 -0.9
3,773,726 + Psyr_3149 0.54 +2.2
3,773,726 + Psyr_3149 0.54 -0.5
3,773,727 - Psyr_3149 0.55 +0.7
3,773,735 - Psyr_3149 0.56 -1.7
3,773,735 - Psyr_3149 0.56 +0.4
3,773,735 - Psyr_3149 0.56 -1.3
3,773,777 + Psyr_3149 0.66 -0.4
3,773,778 - Psyr_3149 0.66 +4.4
3,773,842 + Psyr_3149 0.81 -0.2
3,773,842 + Psyr_3149 0.81 +0.1
3,773,913 + -2.7
3,773,954 - +1.4
3,774,592 - Psyr_3150 0.54 +0.1
3,774,646 - Psyr_3150 0.58 +1.9
3,774,718 + Psyr_3150 0.64 -0.7
3,774,718 + Psyr_3150 0.64 -0.5
3,774,719 - Psyr_3150 0.64 +0.1
3,774,761 + Psyr_3150 0.68 -1.7
3,774,761 + Psyr_3150 0.68 -1.2
3,774,761 + Psyr_3150 0.68 -1.3
3,774,761 + Psyr_3150 0.68 +1.1
3,774,761 + Psyr_3150 0.68 +1.4
3,774,761 + Psyr_3150 0.68 -2.0
3,774,761 + Psyr_3150 0.68 -3.0
3,774,761 + Psyr_3150 0.68 -0.7
3,774,761 + Psyr_3150 0.68 -2.6
3,774,761 + Psyr_3150 0.68 -0.5
3,774,761 + Psyr_3150 0.68 +0.4
3,774,761 + Psyr_3150 0.68 -1.3
3,774,761 + Psyr_3150 0.68 +1.4
3,774,761 + Psyr_3150 0.68 +1.4
3,774,761 + Psyr_3150 0.68 +1.3
3,774,761 + Psyr_3150 0.68 +0.6
3,774,761 + Psyr_3150 0.68 +1.1
3,774,761 + Psyr_3150 0.68 -1.6
3,774,761 + Psyr_3150 0.68 -2.2
3,774,761 + Psyr_3150 0.68 +0.8
3,774,761 + Psyr_3150 0.68 +0.5
3,774,761 + Psyr_3150 0.68 -0.5
3,774,761 + Psyr_3150 0.68 -0.0
3,774,761 + Psyr_3150 0.68 +1.3
3,774,761 + Psyr_3150 0.68 +0.8
3,774,761 + Psyr_3150 0.68 +0.3
3,774,761 + Psyr_3150 0.68 +0.4
3,774,762 - Psyr_3150 0.68 +0.3
3,774,762 - Psyr_3150 0.68 -0.1
3,774,762 - Psyr_3150 0.68 +2.1
3,774,762 - Psyr_3150 0.68 +0.8
3,774,762 - Psyr_3150 0.68 -0.1
3,774,762 - Psyr_3150 0.68 +1.4
3,774,762 - Psyr_3150 0.68 +0.8
3,774,762 - Psyr_3150 0.68 -0.9
3,774,762 - Psyr_3150 0.68 +0.9
3,774,762 - Psyr_3150 0.68 +0.1
3,774,762 - Psyr_3150 0.68 -1.2
3,774,762 - Psyr_3150 0.68 -1.5
3,774,762 - Psyr_3150 0.68 -0.3
3,774,762 - Psyr_3150 0.68 +0.9
3,774,762 - Psyr_3150 0.68 +0.5
3,774,762 - Psyr_3150 0.68 -1.6
3,774,762 - Psyr_3150 0.68 +0.4
3,774,762 - Psyr_3150 0.68 -0.7
3,774,762 - Psyr_3150 0.68 +1.9
3,774,762 - Psyr_3150 0.68 +1.0
3,774,762 - Psyr_3150 0.68 +0.3
3,774,762 - Psyr_3150 0.68 -0.3
3,774,762 - Psyr_3150 0.68 -0.6
3,774,762 - Psyr_3150 0.68 -0.2
3,774,762 - Psyr_3150 0.68 +1.5
3,774,762 - Psyr_3150 0.68 +0.9
3,774,762 - Psyr_3150 0.68 +2.0
3,774,762 - Psyr_3150 0.68 +2.0
3,774,762 - Psyr_3150 0.68 -0.9
3,774,762 - Psyr_3150 0.68 -1.9
3,774,762 - Psyr_3150 0.68 +1.1
3,774,763 + Psyr_3150 0.68 +0.9
3,774,763 + Psyr_3150 0.68 +0.4
3,774,763 + Psyr_3150 0.68 -1.5
3,774,763 + Psyr_3150 0.68 -0.9
3,774,763 + Psyr_3150 0.68 -1.7
3,774,763 + Psyr_3150 0.68 +0.1
3,774,763 + +1.4
3,774,763 + Psyr_3150 0.68 -1.5
3,774,763 + Psyr_3150 0.68 -0.6
3,774,763 + Psyr_3150 0.68 +0.9
3,774,763 + Psyr_3150 0.68 -0.4
3,774,764 - Psyr_3150 0.68 +4.0
3,774,764 - Psyr_3150 0.68 -1.0
3,774,764 - Psyr_3150 0.68 -0.9
3,774,764 - Psyr_3150 0.68 -1.3
3,774,764 - Psyr_3150 0.68 +0.1
3,774,764 - Psyr_3150 0.68 -0.9
3,774,764 - Psyr_3150 0.68 +0.0
3,774,764 - Psyr_3150 0.68 +1.0
3,774,765 + Psyr_3150 0.68 -1.7
3,774,765 + Psyr_3150 0.68 +0.4
3,774,765 + Psyr_3150 0.68 -0.3
3,774,765 + Psyr_3150 0.68 +1.1
3,774,765 + Psyr_3150 0.68 -1.5
3,774,765 + Psyr_3150 0.68 -0.5
3,774,765 + Psyr_3150 0.68 +0.1
3,774,766 - Psyr_3150 0.68 +0.4
3,774,766 - Psyr_3150 0.68 -2.3
3,774,766 - Psyr_3150 0.68 -0.3
3,774,766 - Psyr_3150 0.68 -0.6
3,774,766 - Psyr_3150 0.68 +0.4
3,774,766 - Psyr_3150 0.68 -0.5
3,774,766 - Psyr_3150 0.68 +2.6
3,775,344 + Psyr_3151 0.11 -0.0
3,775,345 - Psyr_3151 0.11 -1.9
3,775,388 + Psyr_3151 0.14 +0.1
3,775,538 + Psyr_3151 0.22 +1.1
3,775,539 - Psyr_3151 0.22 +0.3
3,775,573 - Psyr_3151 0.24 +0.4
3,775,847 + Psyr_3151 0.40 +0.5
3,775,847 + Psyr_3151 0.40 +3.2
3,775,848 - Psyr_3151 0.40 +1.4
3,775,848 - Psyr_3151 0.40 +1.3
3,775,848 - Psyr_3151 0.40 +0.4
3,775,848 - Psyr_3151 0.40 +1.4
3,775,848 - Psyr_3151 0.40 +2.1
3,775,849 - Psyr_3151 0.40 +0.2

Or see this region's nucleotide sequence