Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1852

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1851 and Psyr_1852 are separated by 143 nucleotidesPsyr_1852 and Psyr_1853 are separated by 141 nucleotides Psyr_1851: Psyr_1851 - conserved hypothetical protein, at 2,128,859 to 2,129,662 _1851 Psyr_1852: Psyr_1852 - conserved hypothetical protein, at 2,129,806 to 2,130,837 _1852 Psyr_1853: Psyr_1853 - chorismate synthase, at 2,130,979 to 2,132,070 _1853 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2128.959 kb on + strand, within Psyr_1851at 2128.960 kb on - strand, within Psyr_1851at 2128.960 kb on - strand, within Psyr_1851at 2128.960 kb on - strand, within Psyr_1851at 2128.960 kb on - strand, within Psyr_1851at 2129.108 kb on + strand, within Psyr_1851at 2129.108 kb on + strand, within Psyr_1851at 2129.108 kb on + strand, within Psyr_1851at 2129.108 kb on + strand, within Psyr_1851at 2129.108 kb on + strand, within Psyr_1851at 2129.108 kb on + strand, within Psyr_1851at 2129.108 kb on + strand, within Psyr_1851at 2129.109 kb on - strand, within Psyr_1851at 2129.109 kb on - strand, within Psyr_1851at 2129.109 kb on - strand, within Psyr_1851at 2129.109 kb on - strand, within Psyr_1851at 2129.148 kb on + strand, within Psyr_1851at 2129.148 kb on + strand, within Psyr_1851at 2129.148 kb on + strand, within Psyr_1851at 2129.148 kb on + strand, within Psyr_1851at 2129.149 kb on - strand, within Psyr_1851at 2129.149 kb on - strand, within Psyr_1851at 2129.149 kb on - strand, within Psyr_1851at 2129.250 kb on + strand, within Psyr_1851at 2129.251 kb on - strand, within Psyr_1851at 2129.251 kb on - strand, within Psyr_1851at 2129.251 kb on - strand, within Psyr_1851at 2129.647 kb on + strandat 2129.647 kb on + strandat 2129.647 kb on + strandat 2129.647 kb on + strandat 2129.647 kb on + strandat 2129.647 kb on + strandat 2129.647 kb on + strandat 2129.647 kb on + strandat 2129.648 kb on - strandat 2129.648 kb on - strandat 2129.648 kb on - strandat 2129.648 kb on - strandat 2130.126 kb on - strand, within Psyr_1852at 2130.440 kb on + strand, within Psyr_1852at 2130.440 kb on + strand, within Psyr_1852at 2130.441 kb on - strand, within Psyr_1852at 2130.441 kb on - strand, within Psyr_1852at 2130.920 kb on + strandat 2130.920 kb on + strandat 2130.921 kb on - strandat 2130.921 kb on - strandat 2130.921 kb on - strandat 2130.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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2,128,959 + Psyr_1851 0.12 +0.9
2,128,960 - Psyr_1851 0.13 +0.5
2,128,960 - Psyr_1851 0.13 +0.8
2,128,960 - Psyr_1851 0.13 -0.2
2,128,960 - Psyr_1851 0.13 +0.4
2,129,108 + Psyr_1851 0.31 -0.3
2,129,108 + Psyr_1851 0.31 +0.4
2,129,108 + Psyr_1851 0.31 +0.2
2,129,108 + Psyr_1851 0.31 -0.4
2,129,108 + Psyr_1851 0.31 -0.1
2,129,108 + Psyr_1851 0.31 +0.2
2,129,108 + Psyr_1851 0.31 -0.9
2,129,109 - Psyr_1851 0.31 +0.7
2,129,109 - Psyr_1851 0.31 +1.2
2,129,109 - Psyr_1851 0.31 -2.0
2,129,109 - Psyr_1851 0.31 +0.7
2,129,148 + Psyr_1851 0.36 +1.5
2,129,148 + Psyr_1851 0.36 +0.4
2,129,148 + Psyr_1851 0.36 +0.6
2,129,148 + Psyr_1851 0.36 +0.8
2,129,149 - Psyr_1851 0.36 -1.8
2,129,149 - Psyr_1851 0.36 -0.1
2,129,149 - Psyr_1851 0.36 +1.0
2,129,250 + Psyr_1851 0.49 -1.4
2,129,251 - Psyr_1851 0.49 -0.5
2,129,251 - Psyr_1851 0.49 +0.3
2,129,251 - Psyr_1851 0.49 +0.6
2,129,647 + -2.7
2,129,647 + -0.2
2,129,647 + -3.0
2,129,647 + -0.4
2,129,647 + +2.2
2,129,647 + -2.0
2,129,647 + +1.8
2,129,647 + +0.2
2,129,648 - -2.7
2,129,648 - +1.0
2,129,648 - +1.3
2,129,648 - -0.2
2,130,126 - Psyr_1852 0.31 -1.1
2,130,440 + Psyr_1852 0.61 +0.7
2,130,440 + Psyr_1852 0.61 +0.2
2,130,441 - Psyr_1852 0.62 -1.2
2,130,441 - Psyr_1852 0.62 -1.1
2,130,920 + +1.2
2,130,920 + +0.6
2,130,921 - -1.8
2,130,921 - -1.7
2,130,921 - -1.8
2,130,922 + +1.2

Or see this region's nucleotide sequence