Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1851 and Psyr_1852 are separated by 143 nucleotides Psyr_1852 and Psyr_1853 are separated by 141 nucleotides
Psyr_1851: Psyr_1851 - conserved hypothetical protein, at 2,128,859 to 2,129,662
_1851
Psyr_1852: Psyr_1852 - conserved hypothetical protein, at 2,129,806 to 2,130,837
_1852
Psyr_1853: Psyr_1853 - chorismate synthase, at 2,130,979 to 2,132,070
_1853
Position (kb)
2129
2130
2131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2128.959 kb on + strand, within Psyr_1851 at 2128.960 kb on - strand, within Psyr_1851 at 2128.960 kb on - strand, within Psyr_1851 at 2128.960 kb on - strand, within Psyr_1851 at 2128.960 kb on - strand, within Psyr_1851 at 2129.108 kb on + strand, within Psyr_1851 at 2129.108 kb on + strand, within Psyr_1851 at 2129.108 kb on + strand, within Psyr_1851 at 2129.108 kb on + strand, within Psyr_1851 at 2129.108 kb on + strand, within Psyr_1851 at 2129.108 kb on + strand, within Psyr_1851 at 2129.108 kb on + strand, within Psyr_1851 at 2129.109 kb on - strand, within Psyr_1851 at 2129.109 kb on - strand, within Psyr_1851 at 2129.109 kb on - strand, within Psyr_1851 at 2129.109 kb on - strand, within Psyr_1851 at 2129.148 kb on + strand, within Psyr_1851 at 2129.148 kb on + strand, within Psyr_1851 at 2129.148 kb on + strand, within Psyr_1851 at 2129.148 kb on + strand, within Psyr_1851 at 2129.149 kb on - strand, within Psyr_1851 at 2129.149 kb on - strand, within Psyr_1851 at 2129.149 kb on - strand, within Psyr_1851 at 2129.250 kb on + strand, within Psyr_1851 at 2129.251 kb on - strand, within Psyr_1851 at 2129.251 kb on - strand, within Psyr_1851 at 2129.251 kb on - strand, within Psyr_1851 at 2129.647 kb on + strand at 2129.647 kb on + strand at 2129.647 kb on + strand at 2129.647 kb on + strand at 2129.647 kb on + strand at 2129.647 kb on + strand at 2129.647 kb on + strand at 2129.647 kb on + strand at 2129.648 kb on - strand at 2129.648 kb on - strand at 2129.648 kb on - strand at 2129.648 kb on - strand at 2130.126 kb on - strand, within Psyr_1852 at 2130.440 kb on + strand, within Psyr_1852 at 2130.440 kb on + strand, within Psyr_1852 at 2130.441 kb on - strand, within Psyr_1852 at 2130.441 kb on - strand, within Psyr_1852 at 2130.920 kb on + strand at 2130.920 kb on + strand at 2130.921 kb on - strand at 2130.921 kb on - strand at 2130.921 kb on - strand at 2130.922 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 2,128,959 + Psyr_1851 0.12 +0.9 2,128,960 - Psyr_1851 0.13 +0.5 2,128,960 - Psyr_1851 0.13 +0.8 2,128,960 - Psyr_1851 0.13 -0.2 2,128,960 - Psyr_1851 0.13 +0.4 2,129,108 + Psyr_1851 0.31 -0.3 2,129,108 + Psyr_1851 0.31 +0.4 2,129,108 + Psyr_1851 0.31 +0.2 2,129,108 + Psyr_1851 0.31 -0.4 2,129,108 + Psyr_1851 0.31 -0.1 2,129,108 + Psyr_1851 0.31 +0.2 2,129,108 + Psyr_1851 0.31 -0.9 2,129,109 - Psyr_1851 0.31 +0.7 2,129,109 - Psyr_1851 0.31 +1.2 2,129,109 - Psyr_1851 0.31 -2.0 2,129,109 - Psyr_1851 0.31 +0.7 2,129,148 + Psyr_1851 0.36 +1.5 2,129,148 + Psyr_1851 0.36 +0.4 2,129,148 + Psyr_1851 0.36 +0.6 2,129,148 + Psyr_1851 0.36 +0.8 2,129,149 - Psyr_1851 0.36 -1.8 2,129,149 - Psyr_1851 0.36 -0.1 2,129,149 - Psyr_1851 0.36 +1.0 2,129,250 + Psyr_1851 0.49 -1.4 2,129,251 - Psyr_1851 0.49 -0.5 2,129,251 - Psyr_1851 0.49 +0.3 2,129,251 - Psyr_1851 0.49 +0.6 2,129,647 + -2.7 2,129,647 + -0.2 2,129,647 + -3.0 2,129,647 + -0.4 2,129,647 + +2.2 2,129,647 + -2.0 2,129,647 + +1.8 2,129,647 + +0.2 2,129,648 - -2.7 2,129,648 - +1.0 2,129,648 - +1.3 2,129,648 - -0.2 2,130,126 - Psyr_1852 0.31 -1.1 2,130,440 + Psyr_1852 0.61 +0.7 2,130,440 + Psyr_1852 0.61 +0.2 2,130,441 - Psyr_1852 0.62 -1.2 2,130,441 - Psyr_1852 0.62 -1.1 2,130,920 + +1.2 2,130,920 + +0.6 2,130,921 - -1.8 2,130,921 - -1.7 2,130,921 - -1.8 2,130,922 + +1.2
Or see this region's nucleotide sequence