Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1687

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1685 and Psyr_1686 overlap by 1 nucleotidesPsyr_1686 and Psyr_1687 are separated by 2 nucleotidesPsyr_1687 and Psyr_1688 are separated by 28 nucleotidesPsyr_1688 and Psyr_1689 are separated by 29 nucleotides Psyr_1685: Psyr_1685 - NAD(+) kinase, at 1,893,879 to 1,894,769 _1685 Psyr_1686: Psyr_1686 - Metallophosphoesterase, at 1,894,769 to 1,895,734 _1686 Psyr_1687: Psyr_1687 - Rhomboid-like protein, at 1,895,737 to 1,896,609 _1687 Psyr_1688: Psyr_1688 - Protein of unknown function DUF1315, at 1,896,638 to 1,896,898 _1688 Psyr_1689: Psyr_1689 - conserved hypothetical protein, at 1,896,928 to 1,897,728 _1689 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -2 -1 0 1 2at 1894.767 kb on + strandat 1894.768 kb on - strandat 1895.166 kb on - strand, within Psyr_1686at 1895.166 kb on - strand, within Psyr_1686at 1895.166 kb on - strand, within Psyr_1686at 1895.180 kb on + strand, within Psyr_1686at 1895.181 kb on - strand, within Psyr_1686at 1895.181 kb on - strand, within Psyr_1686at 1895.181 kb on - strand, within Psyr_1686at 1895.628 kb on - strand, within Psyr_1686at 1895.628 kb on - strand, within Psyr_1686at 1895.628 kb on - strand, within Psyr_1686at 1895.628 kb on - strand, within Psyr_1686at 1895.747 kb on + strandat 1895.748 kb on - strandat 1895.748 kb on - strandat 1895.748 kb on - strandat 1895.748 kb on - strandat 1895.902 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.966 kb on - strand, within Psyr_1687at 1895.993 kb on + strand, within Psyr_1687at 1896.332 kb on - strand, within Psyr_1687at 1896.379 kb on + strand, within Psyr_1687at 1896.379 kb on + strand, within Psyr_1687at 1896.379 kb on + strand, within Psyr_1687at 1896.607 kb on + strandat 1896.614 kb on - strandat 1896.650 kb on - strandat 1896.650 kb on - strandat 1896.650 kb on - strandat 1896.652 kb on - strandat 1896.684 kb on - strand, within Psyr_1688at 1896.684 kb on - strand, within Psyr_1688at 1896.684 kb on - strand, within Psyr_1688at 1896.684 kb on - strand, within Psyr_1688at 1896.964 kb on + strandat 1897.084 kb on + strand, within Psyr_1689at 1897.096 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.535 kb on + strand, within Psyr_1689at 1897.535 kb on + strand, within Psyr_1689at 1897.536 kb on - strand, within Psyr_1689at 1897.536 kb on - strand, within Psyr_1689

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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1,894,767 + +0.4
1,894,768 - +0.3
1,895,166 - Psyr_1686 0.41 +0.8
1,895,166 - Psyr_1686 0.41 -1.4
1,895,166 - Psyr_1686 0.41 +1.6
1,895,180 + Psyr_1686 0.43 +0.1
1,895,181 - Psyr_1686 0.43 +0.1
1,895,181 - Psyr_1686 0.43 -0.4
1,895,181 - Psyr_1686 0.43 +0.4
1,895,628 - Psyr_1686 0.89 +0.5
1,895,628 - Psyr_1686 0.89 +1.8
1,895,628 - Psyr_1686 0.89 -0.3
1,895,628 - Psyr_1686 0.89 +0.0
1,895,747 + +0.0
1,895,748 - -1.6
1,895,748 - -0.4
1,895,748 - +0.1
1,895,748 - +0.6
1,895,902 + Psyr_1687 0.19 -0.8
1,895,965 + Psyr_1687 0.26 +0.7
1,895,965 + Psyr_1687 0.26 -0.4
1,895,965 + Psyr_1687 0.26 -1.4
1,895,965 + Psyr_1687 0.26 -0.4
1,895,965 + Psyr_1687 0.26 -0.4
1,895,966 - Psyr_1687 0.26 -1.9
1,895,993 + Psyr_1687 0.29 -0.4
1,896,332 - Psyr_1687 0.68 -0.8
1,896,379 + Psyr_1687 0.74 -0.8
1,896,379 + Psyr_1687 0.74 -2.5
1,896,379 + Psyr_1687 0.74 +0.8
1,896,607 + -0.4
1,896,614 - -0.4
1,896,650 - -1.2
1,896,650 - +0.1
1,896,650 - -1.1
1,896,652 - +2.5
1,896,684 - Psyr_1688 0.18 +1.1
1,896,684 - Psyr_1688 0.18 +0.6
1,896,684 - Psyr_1688 0.18 +0.2
1,896,684 - Psyr_1688 0.18 -1.1
1,896,964 + +0.1
1,897,084 + Psyr_1689 0.19 +1.5
1,897,096 + Psyr_1689 0.21 -0.0
1,897,231 + Psyr_1689 0.38 +0.8
1,897,231 + Psyr_1689 0.38 +0.2
1,897,231 + Psyr_1689 0.38 -0.4
1,897,535 + Psyr_1689 0.76 +0.8
1,897,535 + Psyr_1689 0.76 +0.2
1,897,536 - Psyr_1689 0.76 +2.5
1,897,536 - Psyr_1689 0.76 +0.5

Or see this region's nucleotide sequence