Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0860 and Psyr_0861 are separated by 107 nucleotides Psyr_0861 and Psyr_0862 are separated by 65 nucleotides Psyr_0862 and Psyr_0863 are separated by 227 nucleotides Psyr_0863 and Psyr_0864 are separated by 108 nucleotides
Psyr_0860: Psyr_0860 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 978,915 to 980,591
_0860
Psyr_0861: Psyr_0861 - Metal-dependent phosphohydrolase, HD subdomain protein, at 980,699 to 981,358
_0861
Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445
_0862
Psyr_0863: Psyr_0863 - PhnA protein, at 983,673 to 984,047
_0863
Psyr_0864: Psyr_0864 - Protein of unknown function DUF393, at 984,156 to 984,587
_0864
Position (kb) 981
982
983
984 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 980.461 kb on - strand at 980.490 kb on + strand at 980.490 kb on + strand at 980.492 kb on + strand at 980.492 kb on + strand at 980.493 kb on - strand at 980.566 kb on - strand at 980.566 kb on - strand at 980.605 kb on + strand at 980.605 kb on + strand at 980.607 kb on + strand at 980.607 kb on + strand at 980.608 kb on - strand at 980.608 kb on - strand at 980.637 kb on + strand at 980.863 kb on - strand, within Psyr_0861 at 980.889 kb on + strand, within Psyr_0861 at 980.889 kb on + strand, within Psyr_0861 at 980.898 kb on + strand, within Psyr_0861 at 980.899 kb on - strand, within Psyr_0861 at 980.924 kb on + strand, within Psyr_0861 at 980.925 kb on - strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.987 kb on + strand, within Psyr_0861 at 980.988 kb on - strand, within Psyr_0861 at 980.988 kb on - strand, within Psyr_0861 at 981.095 kb on + strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.396 kb on - strand at 981.396 kb on - strand at 981.415 kb on - strand at 981.439 kb on - strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.503 kb on + strand at 981.504 kb on - strand at 981.504 kb on - strand at 981.504 kb on - strand at 981.714 kb on - strand, within Psyr_0862 at 981.824 kb on - strand, within Psyr_0862 at 981.824 kb on - strand, within Psyr_0862 at 981.878 kb on + strand, within Psyr_0862 at 981.879 kb on - strand, within Psyr_0862 at 981.902 kb on + strand, within Psyr_0862 at 981.917 kb on + strand, within Psyr_0862 at 981.917 kb on + strand, within Psyr_0862 at 981.917 kb on + strand, within Psyr_0862 at 981.918 kb on - strand, within Psyr_0862 at 981.918 kb on - strand, within Psyr_0862 at 981.918 kb on - strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.017 kb on - strand, within Psyr_0862 at 982.017 kb on - strand, within Psyr_0862 at 982.017 kb on - strand, within Psyr_0862 at 982.017 kb on - strand, within Psyr_0862 at 982.508 kb on + strand, within Psyr_0862 at 982.508 kb on + strand, within Psyr_0862 at 982.547 kb on + strand, within Psyr_0862 at 982.548 kb on - strand, within Psyr_0862 at 982.556 kb on + strand, within Psyr_0862 at 982.557 kb on - strand, within Psyr_0862 at 982.672 kb on - strand, within Psyr_0862 at 982.756 kb on + strand, within Psyr_0862 at 982.757 kb on - strand, within Psyr_0862 at 982.757 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.853 kb on + strand, within Psyr_0862 at 982.853 kb on + strand, within Psyr_0862 at 982.853 kb on + strand, within Psyr_0862 at 982.854 kb on - strand, within Psyr_0862 at 982.854 kb on - strand, within Psyr_0862 at 982.854 kb on - strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.994 kb on + strand, within Psyr_0862 at 982.994 kb on + strand, within Psyr_0862 at 982.994 kb on + strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 983.022 kb on + strand, within Psyr_0862 at 983.023 kb on - strand, within Psyr_0862 at 983.023 kb on - strand, within Psyr_0862 at 983.061 kb on - strand, within Psyr_0862 at 983.061 kb on - strand, within Psyr_0862 at 983.129 kb on + strand, within Psyr_0862 at 983.129 kb on + strand, within Psyr_0862 at 983.130 kb on - strand, within Psyr_0862 at 983.130 kb on - strand, within Psyr_0862 at 983.228 kb on + strand, within Psyr_0862 at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.480 kb on + strand at 983.480 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.501 kb on - strand at 983.529 kb on + strand at 983.530 kb on - strand at 983.578 kb on - strand at 983.618 kb on + strand at 983.619 kb on - strand at 983.619 kb on - strand at 983.619 kb on - strand at 983.665 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.743 kb on - strand, within Psyr_0863 at 983.743 kb on - strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 984.353 kb on + strand, within Psyr_0864 at 984.354 kb on - strand, within Psyr_0864 at 984.354 kb on - strand, within Psyr_0864
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 980,461 - -0.1 980,490 + -0.8 980,490 + +0.5 980,492 + -1.3 980,492 + -1.1 980,493 - -1.3 980,566 - -2.2 980,566 - -0.3 980,605 + +0.5 980,605 + +0.7 980,607 + -0.8 980,607 + +0.4 980,608 - -0.6 980,608 - -0.6 980,637 + -0.4 980,863 - Psyr_0861 0.25 +0.3 980,889 + Psyr_0861 0.29 +0.4 980,889 + Psyr_0861 0.29 -1.1 980,898 + Psyr_0861 0.30 +1.7 980,899 - Psyr_0861 0.30 -0.1 980,924 + Psyr_0861 0.34 -0.6 980,925 - Psyr_0861 0.34 -1.6 980,928 + Psyr_0861 0.35 +1.6 980,928 + Psyr_0861 0.35 -1.8 980,928 + Psyr_0861 0.35 -0.1 980,928 + Psyr_0861 0.35 -0.7 980,928 + Psyr_0861 0.35 +0.4 980,929 - Psyr_0861 0.35 -1.9 980,929 - Psyr_0861 0.35 -1.1 980,929 - Psyr_0861 0.35 -1.6 980,929 - Psyr_0861 0.35 +0.4 980,929 - Psyr_0861 0.35 +0.5 980,929 - Psyr_0861 0.35 +0.5 980,929 - Psyr_0861 0.35 -0.9 980,929 - Psyr_0861 0.35 +1.1 980,987 + Psyr_0861 0.44 -0.1 980,988 - Psyr_0861 0.44 -0.4 980,988 - Psyr_0861 0.44 +0.9 981,095 + Psyr_0861 0.60 +0.2 981,096 - Psyr_0861 0.60 -0.2 981,096 - Psyr_0861 0.60 +1.3 981,096 - Psyr_0861 0.60 -1.8 981,396 - +0.4 981,396 - +1.0 981,415 - +1.4 981,439 - +1.3 981,500 + -0.1 981,500 + +0.0 981,500 + -0.9 981,501 - -2.3 981,501 - +1.2 981,501 - +0.4 981,501 - +0.8 981,503 + +0.3 981,504 - +0.5 981,504 - -1.4 981,504 - +0.4 981,714 - Psyr_0862 0.14 -1.0 981,824 - Psyr_0862 0.20 -2.1 981,824 - Psyr_0862 0.20 -0.2 981,878 + Psyr_0862 0.22 +0.1 981,879 - Psyr_0862 0.23 +3.2 981,902 + Psyr_0862 0.24 -0.5 981,917 + Psyr_0862 0.24 -1.9 981,917 + Psyr_0862 0.24 +1.5 981,917 + Psyr_0862 0.24 +3.5 981,918 - Psyr_0862 0.24 -0.8 981,918 - Psyr_0862 0.24 +0.1 981,918 - Psyr_0862 0.24 +1.9 982,016 + Psyr_0862 0.29 +0.5 982,016 + Psyr_0862 0.29 +0.7 982,016 + Psyr_0862 0.29 -0.4 982,016 + Psyr_0862 0.29 +0.5 982,016 + Psyr_0862 0.29 -1.2 982,016 + Psyr_0862 0.29 +0.1 982,017 - Psyr_0862 0.29 +0.4 982,017 - Psyr_0862 0.29 -0.6 982,017 - Psyr_0862 0.29 +2.0 982,017 - Psyr_0862 0.29 -0.3 982,508 + Psyr_0862 0.54 +0.6 982,508 + Psyr_0862 0.54 +0.5 982,547 + Psyr_0862 0.56 -0.2 982,548 - Psyr_0862 0.56 +0.3 982,556 + Psyr_0862 0.56 -0.4 982,557 - Psyr_0862 0.56 +0.3 982,672 - Psyr_0862 0.62 -0.0 982,756 + Psyr_0862 0.66 +2.5 982,757 - Psyr_0862 0.66 +1.2 982,757 - Psyr_0862 0.66 +1.0 982,800 - Psyr_0862 0.68 +0.8 982,800 - Psyr_0862 0.68 -0.5 982,800 - Psyr_0862 0.68 -1.8 982,800 - Psyr_0862 0.68 +0.0 982,800 - Psyr_0862 0.68 -2.4 982,800 - Psyr_0862 0.68 +1.2 982,800 - Psyr_0862 0.68 -0.9 982,853 + Psyr_0862 0.71 +0.9 982,853 + Psyr_0862 0.71 +0.9 982,853 + Psyr_0862 0.71 +1.5 982,854 - Psyr_0862 0.71 -0.5 982,854 - Psyr_0862 0.71 -2.4 982,854 - Psyr_0862 0.71 +1.2 982,991 + Psyr_0862 0.77 -0.5 982,991 + Psyr_0862 0.77 +1.3 982,991 + Psyr_0862 0.77 +0.3 982,991 + Psyr_0862 0.77 +1.3 982,991 + Psyr_0862 0.77 +0.9 982,991 + Psyr_0862 0.77 -0.8 982,991 + Psyr_0862 0.77 +1.5 982,992 - Psyr_0862 0.78 -0.9 982,992 - Psyr_0862 0.78 -1.1 982,992 - Psyr_0862 0.78 -0.8 982,992 - Psyr_0862 0.78 -2.7 982,992 - Psyr_0862 0.78 +2.0 982,992 - Psyr_0862 0.78 +0.5 982,992 - Psyr_0862 0.78 +0.8 982,994 + Psyr_0862 0.78 -1.9 982,994 + Psyr_0862 0.78 -1.8 982,994 + Psyr_0862 0.78 +1.2 982,995 - Psyr_0862 0.78 +0.3 982,995 - Psyr_0862 0.78 +0.4 982,995 - Psyr_0862 0.78 +0.8 982,995 - Psyr_0862 0.78 -1.3 982,995 - Psyr_0862 0.78 -0.2 982,995 - Psyr_0862 0.78 -0.1 982,995 - Psyr_0862 0.78 +2.3 983,022 + Psyr_0862 0.79 +0.5 983,023 - Psyr_0862 0.79 +1.2 983,023 - Psyr_0862 0.79 +0.2 983,061 - Psyr_0862 0.81 -0.1 983,061 - Psyr_0862 0.81 +0.4 983,129 + Psyr_0862 0.84 -1.3 983,129 + Psyr_0862 0.84 +1.2 983,130 - Psyr_0862 0.84 +0.4 983,130 - Psyr_0862 0.84 -0.1 983,228 + Psyr_0862 0.89 +0.4 983,257 + -0.6 983,257 + -2.3 983,257 + +1.5 983,257 + -0.1 983,257 + +0.8 983,257 + -0.3 983,258 - -0.1 983,258 - -1.8 983,258 - +1.5 983,258 - +0.3 983,463 + +0.5 983,463 + +0.7 983,463 + -0.3 983,463 + +0.3 983,463 + -0.6 983,464 - +0.5 983,464 - +0.8 983,464 - +0.2 983,464 - +0.5 983,480 + +0.5 983,480 + -2.1 983,496 + +0.5 983,496 + +0.6 983,496 + -0.5 983,496 + +0.4 983,496 + -0.3 983,496 + -0.2 983,496 + +0.2 983,496 + +0.4 983,496 + +0.5 983,496 + +0.7 983,496 + -0.8 983,497 - +0.4 983,497 - +1.1 983,497 - +0.1 983,497 - -1.8 983,501 - -1.5 983,529 + +0.0 983,530 - +0.4 983,578 - +0.4 983,618 + +1.1 983,619 - +1.0 983,619 - +0.3 983,619 - +0.7 983,665 + +0.9 983,667 + +0.1 983,667 + -1.9 983,667 + +0.8 983,667 + +0.2 983,667 + +1.4 983,667 + +1.8 983,667 + +1.0 983,667 + -0.5 983,667 + -2.6 983,667 + +0.7 983,667 + +1.2 983,668 - -0.1 983,668 - -0.3 983,668 - -0.3 983,668 - +0.6 983,668 - -0.5 983,668 - -0.2 983,668 - +0.1 983,743 - Psyr_0863 0.19 +0.3 983,743 - Psyr_0863 0.19 -0.2 983,748 + Psyr_0863 0.20 +1.4 983,748 + Psyr_0863 0.20 -0.1 983,749 - Psyr_0863 0.20 +0.8 983,749 - Psyr_0863 0.20 +0.4 983,749 - Psyr_0863 0.20 -0.6 983,749 - Psyr_0863 0.20 +0.9 983,749 - Psyr_0863 0.20 -0.6 983,749 - Psyr_0863 0.20 +0.2 983,749 - Psyr_0863 0.20 +0.2 983,749 - Psyr_0863 0.20 +0.2 983,749 - Psyr_0863 0.20 -1.3 984,353 + Psyr_0864 0.46 +0.3 984,354 - Psyr_0864 0.46 +0.0 984,354 - Psyr_0864 0.46 -0.7
Or see this region's nucleotide sequence