Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0640 and Psyr_0641 are separated by 19 nucleotides Psyr_0641 and Psyr_0642 overlap by 4 nucleotides Psyr_0642 and Psyr_0643 are separated by 120 nucleotides
Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260
_0640
Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029
_0641
Psyr_0642: Psyr_0642 - conserved hypothetical protein, at 730,026 to 730,331
_0642
Psyr_0643: Psyr_0643 - MaoC-like dehydratase, at 730,452 to 731,312
_0643
Position (kb) 730
731 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 729.178 kb on + strand, within Psyr_0640 at 729.178 kb on + strand, within Psyr_0640 at 729.179 kb on - strand, within Psyr_0640 at 729.182 kb on + strand, within Psyr_0640 at 729.240 kb on + strand at 729.240 kb on + strand at 729.240 kb on + strand at 729.240 kb on + strand at 729.241 kb on - strand at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.419 kb on - strand, within Psyr_0641 at 729.597 kb on - strand, within Psyr_0641 at 729.597 kb on - strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.896 kb on - strand, within Psyr_0641 at 729.943 kb on + strand, within Psyr_0641 at 729.977 kb on + strand at 729.977 kb on + strand at 729.978 kb on - strand at 729.978 kb on - strand at 730.117 kb on + strand, within Psyr_0642 at 730.117 kb on + strand, within Psyr_0642 at 730.206 kb on + strand, within Psyr_0642 at 730.206 kb on + strand, within Psyr_0642 at 730.206 kb on + strand, within Psyr_0642 at 730.207 kb on - strand, within Psyr_0642 at 730.352 kb on + strand at 730.352 kb on + strand at 730.352 kb on + strand at 730.353 kb on - strand at 730.353 kb on - strand at 730.353 kb on - strand at 730.353 kb on - strand at 730.484 kb on + strand at 730.484 kb on + strand at 730.484 kb on + strand at 730.485 kb on - strand at 730.485 kb on - strand at 730.485 kb on - strand at 730.750 kb on + strand, within Psyr_0643 at 730.761 kb on + strand, within Psyr_0643 at 730.761 kb on + strand, within Psyr_0643 at 730.762 kb on - strand, within Psyr_0643 at 730.975 kb on + strand, within Psyr_0643 at 730.975 kb on + strand, within Psyr_0643 at 730.975 kb on + strand, within Psyr_0643 at 730.975 kb on + strand, within Psyr_0643 at 730.975 kb on + strand, within Psyr_0643 at 730.975 kb on + strand, within Psyr_0643 at 730.975 kb on + strand, within Psyr_0643 at 730.975 kb on + strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 730.976 kb on - strand, within Psyr_0643 at 731.110 kb on + strand, within Psyr_0643 at 731.110 kb on + strand, within Psyr_0643
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 729,178 + Psyr_0640 0.87 -0.9 729,178 + Psyr_0640 0.87 -0.4 729,179 - Psyr_0640 0.87 +1.6 729,182 + Psyr_0640 0.88 -0.3 729,240 + +0.6 729,240 + +0.8 729,240 + +0.6 729,240 + +0.0 729,241 - -0.2 729,407 + Psyr_0641 0.17 -2.1 729,407 + Psyr_0641 0.17 -0.6 729,407 + Psyr_0641 0.17 +0.6 729,407 + Psyr_0641 0.17 -0.3 729,407 + Psyr_0641 0.17 +1.4 729,407 + Psyr_0641 0.17 -3.0 729,407 + Psyr_0641 0.17 -1.1 729,407 + Psyr_0641 0.17 +1.2 729,407 + Psyr_0641 0.17 +1.6 729,407 + Psyr_0641 0.17 -1.2 729,407 + Psyr_0641 0.17 -1.1 729,407 + Psyr_0641 0.17 +0.6 729,407 + Psyr_0641 0.17 -0.4 729,408 - Psyr_0641 0.17 +0.6 729,408 - Psyr_0641 0.17 -1.7 729,408 - Psyr_0641 0.17 -0.7 729,408 - Psyr_0641 0.17 +0.4 729,408 - Psyr_0641 0.17 -0.4 729,408 - Psyr_0641 0.17 +1.1 729,408 - Psyr_0641 0.17 -1.0 729,419 - Psyr_0641 0.19 +0.1 729,597 - Psyr_0641 0.42 +0.5 729,597 - Psyr_0641 0.42 +2.0 729,707 + Psyr_0641 0.57 +0.6 729,707 + Psyr_0641 0.57 -0.2 729,707 + Psyr_0641 0.57 -0.0 729,707 + Psyr_0641 0.57 -0.6 729,707 + Psyr_0641 0.57 -1.2 729,707 + Psyr_0641 0.57 +1.9 729,707 + Psyr_0641 0.57 -0.6 729,707 + Psyr_0641 0.57 +1.1 729,707 + Psyr_0641 0.57 -1.5 729,707 + Psyr_0641 0.57 -0.4 729,707 + Psyr_0641 0.57 -0.3 729,707 + Psyr_0641 0.57 +0.0 729,707 + Psyr_0641 0.57 +0.8 729,708 - Psyr_0641 0.57 +1.6 729,708 - Psyr_0641 0.57 +0.8 729,708 - Psyr_0641 0.57 +0.2 729,708 - Psyr_0641 0.57 -0.4 729,708 - Psyr_0641 0.57 -0.4 729,708 - Psyr_0641 0.57 +0.1 729,708 - Psyr_0641 0.57 +0.0 729,708 - Psyr_0641 0.57 +1.2 729,708 - Psyr_0641 0.57 -0.8 729,708 - Psyr_0641 0.57 +0.6 729,896 - Psyr_0641 0.82 -0.4 729,943 + Psyr_0641 0.88 +0.4 729,977 + -0.3 729,977 + +0.1 729,978 - -1.0 729,978 - -0.3 730,117 + Psyr_0642 0.30 -0.2 730,117 + Psyr_0642 0.30 -0.2 730,206 + Psyr_0642 0.59 +0.3 730,206 + Psyr_0642 0.59 -2.5 730,206 + Psyr_0642 0.59 -1.5 730,207 - Psyr_0642 0.59 -3.2 730,352 + -1.2 730,352 + -0.4 730,352 + +2.6 730,353 - -1.3 730,353 - +0.3 730,353 - +0.1 730,353 - +1.1 730,484 + -0.1 730,484 + -0.8 730,484 + +2.4 730,485 - -1.8 730,485 - +1.3 730,485 - +1.1 730,750 + Psyr_0643 0.35 -0.4 730,761 + Psyr_0643 0.36 +0.8 730,761 + Psyr_0643 0.36 -0.6 730,762 - Psyr_0643 0.36 -1.0 730,975 + Psyr_0643 0.61 -0.3 730,975 + Psyr_0643 0.61 -0.5 730,975 + Psyr_0643 0.61 -0.2 730,975 + Psyr_0643 0.61 +1.3 730,975 + Psyr_0643 0.61 -0.5 730,975 + Psyr_0643 0.61 -1.7 730,975 + Psyr_0643 0.61 +0.0 730,975 + Psyr_0643 0.61 -0.6 730,976 - Psyr_0643 0.61 +0.7 730,976 - Psyr_0643 0.61 +0.3 730,976 - Psyr_0643 0.61 -2.2 730,976 - Psyr_0643 0.61 -0.8 730,976 - Psyr_0643 0.61 -0.1 730,976 - Psyr_0643 0.61 +1.0 730,976 - Psyr_0643 0.61 +1.2 730,976 - Psyr_0643 0.61 +0.4 730,976 - Psyr_0643 0.61 +1.0 730,976 - Psyr_0643 0.61 -0.9 730,976 - Psyr_0643 0.61 -2.0 731,110 + Psyr_0643 0.76 -1.3 731,110 + Psyr_0643 0.76 -0.8
Or see this region's nucleotide sequence