Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0465 and Psyr_0466 are separated by 10 nucleotides Psyr_0466 and Psyr_0467 are separated by 225 nucleotides Psyr_0467 and Psyr_0468 are separated by 173 nucleotides
Psyr_0465: Psyr_0465 - HopAN1 protein, at 503,530 to 504,819
_0465
Psyr_0466: Psyr_0466 - 3-hydroxyisobutyrate dehydrogenase, at 504,830 to 505,735
_0466
Psyr_0467: Psyr_0467 - Protein of unknown function UPF0153, at 505,961 to 506,416
_0467
Psyr_0468: Psyr_0468 - Aminotransferase, class I and II, at 506,590 to 507,798
_0468
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.873 kb on - strand, within Psyr_0465 at 504.176 kb on + strand, within Psyr_0465 at 504.176 kb on + strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.284 kb on + strand, within Psyr_0465 at 504.284 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.549 kb on - strand, within Psyr_0465 at 504.549 kb on - strand, within Psyr_0465 at 504.559 kb on + strand, within Psyr_0465 at 504.559 kb on + strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 505.044 kb on + strand, within Psyr_0466 at 505.119 kb on + strand, within Psyr_0466 at 505.119 kb on + strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.187 kb on + strand, within Psyr_0466 at 505.187 kb on + strand, within Psyr_0466 at 505.188 kb on - strand, within Psyr_0466 at 505.188 kb on - strand, within Psyr_0466 at 505.254 kb on + strand, within Psyr_0466 at 505.383 kb on + strand, within Psyr_0466 at 505.384 kb on - strand, within Psyr_0466 at 505.536 kb on - strand, within Psyr_0466 at 505.740 kb on + strand at 505.788 kb on + strand at 505.789 kb on - strand at 506.037 kb on + strand, within Psyr_0467 at 506.037 kb on + strand, within Psyr_0467 at 506.037 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.136 kb on + strand, within Psyr_0467 at 506.137 kb on - strand, within Psyr_0467 at 506.194 kb on - strand, within Psyr_0467 at 506.358 kb on + strand, within Psyr_0467 at 506.358 kb on + strand, within Psyr_0467 at 506.359 kb on - strand, within Psyr_0467 at 506.359 kb on - strand, within Psyr_0467
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 503,865 - Psyr_0465 0.26 +1.6 503,865 - Psyr_0465 0.26 +0.1 503,865 - Psyr_0465 0.26 +0.2 503,865 - Psyr_0465 0.26 -1.3 503,873 - Psyr_0465 0.27 +1.0 504,176 + Psyr_0465 0.50 +0.1 504,176 + Psyr_0465 0.50 +0.4 504,177 - Psyr_0465 0.50 -0.6 504,177 - Psyr_0465 0.50 +1.2 504,177 - Psyr_0465 0.50 +0.1 504,177 - Psyr_0465 0.50 +1.1 504,284 + Psyr_0465 0.58 -0.8 504,284 + Psyr_0465 0.58 +0.5 504,548 + Psyr_0465 0.79 +0.3 504,548 + Psyr_0465 0.79 +1.7 504,548 + Psyr_0465 0.79 +1.4 504,548 + Psyr_0465 0.79 -1.5 504,548 + Psyr_0465 0.79 +0.1 504,548 + Psyr_0465 0.79 +0.7 504,549 - Psyr_0465 0.79 -2.4 504,549 - Psyr_0465 0.79 -2.0 504,559 + Psyr_0465 0.80 -0.0 504,559 + Psyr_0465 0.80 -1.3 504,560 - Psyr_0465 0.80 -1.3 504,560 - Psyr_0465 0.80 +0.0 504,560 - Psyr_0465 0.80 -2.3 505,044 + Psyr_0466 0.24 -0.6 505,119 + Psyr_0466 0.32 -1.6 505,119 + Psyr_0466 0.32 -0.9 505,120 - Psyr_0466 0.32 -0.4 505,120 - Psyr_0466 0.32 -1.0 505,120 - Psyr_0466 0.32 -0.5 505,120 - Psyr_0466 0.32 +1.7 505,187 + Psyr_0466 0.39 +0.2 505,187 + Psyr_0466 0.39 -0.3 505,188 - Psyr_0466 0.40 +1.1 505,188 - Psyr_0466 0.40 -0.9 505,254 + Psyr_0466 0.47 +0.8 505,383 + Psyr_0466 0.61 -0.5 505,384 - Psyr_0466 0.61 -0.6 505,536 - Psyr_0466 0.78 -0.7 505,740 + +0.3 505,788 + +2.0 505,789 - +0.1 506,037 + Psyr_0467 0.17 +0.9 506,037 + Psyr_0467 0.17 -0.6 506,037 + Psyr_0467 0.17 -0.4 506,103 + Psyr_0467 0.31 +1.2 506,103 + Psyr_0467 0.31 -0.8 506,103 + Psyr_0467 0.31 +0.7 506,103 + Psyr_0467 0.31 -0.6 506,103 + Psyr_0467 0.31 +0.7 506,103 + Psyr_0467 0.31 -0.1 506,104 - Psyr_0467 0.31 -1.1 506,104 - Psyr_0467 0.31 -0.4 506,104 - Psyr_0467 0.31 -1.5 506,104 - Psyr_0467 0.31 +0.3 506,104 - Psyr_0467 0.31 -2.4 506,104 - Psyr_0467 0.31 -1.8 506,104 - Psyr_0467 0.31 +0.2 506,136 + Psyr_0467 0.38 +0.1 506,137 - Psyr_0467 0.39 -0.6 506,194 - Psyr_0467 0.51 +0.1 506,358 + Psyr_0467 0.87 +1.8 506,358 + Psyr_0467 0.87 +0.5 506,359 - Psyr_0467 0.87 +0.9 506,359 - Psyr_0467 0.87 +0.4
Or see this region's nucleotide sequence