Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0007

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
7,246	+				-0.6
7,247	-				+2.2
7,247	-				+0.3
7,283	-				+0.7
7,317	+		Psyr_0006	0.12	-0.6
7,317	+		Psyr_0006	0.12	+0.4
7,317	+		Psyr_0006	0.12	+0.3
7,317	+				+0.3
7,317	+		Psyr_0006	0.12	+0.0
7,317	+		Psyr_0006	0.12	-0.4
7,317	+		Psyr_0006	0.12	-1.6
7,318	-		Psyr_0006	0.12	+0.1
7,318	-		Psyr_0006	0.12	-0.5
7,318	-		Psyr_0006	0.12	+0.6
7,318	-		Psyr_0006	0.12	+0.8
7,318	-		Psyr_0006	0.12	-0.9
7,321	+		Psyr_0006	0.12	-1.6
7,322	-		Psyr_0006	0.12	+1.0
7,322	-		Psyr_0006	0.12	-0.4
7,322	-		Psyr_0006	0.12	+0.1
7,535	+		Psyr_0006	0.33	-0.1
7,536	+		Psyr_0006	0.33	-0.7
7,536	+		Psyr_0006	0.33	+2.2
7,536	+		Psyr_0006	0.33	-1.6
7,536	+		Psyr_0006	0.33	+0.2
7,536	+		Psyr_0006	0.33	+0.6
7,536	+		Psyr_0006	0.33	-0.6
7,536	+		Psyr_0006	0.33	-0.1
7,536	+		Psyr_0006	0.33	+0.4
7,536	+		Psyr_0006	0.33	+1.0
7,537	-		Psyr_0006	0.33	+0.5
7,537	-		Psyr_0006	0.33	-1.4
7,537	-		Psyr_0006	0.33	-2.6
7,537	-		Psyr_0006	0.33	+0.7
7,537	-		Psyr_0006	0.33	+0.1
7,537	-		Psyr_0006	0.33	-0.8
7,537	-		Psyr_0006	0.33	+1.7
7,537	-		Psyr_0006	0.33	-0.8
7,537	-		Psyr_0006	0.33	-0.4
7,537	-		Psyr_0006	0.33	+1.5
7,537	-		Psyr_0006	0.33	-0.7
7,537	-		Psyr_0006	0.33	+1.7
7,550	-		Psyr_0006	0.34	+1.0
7,550	-		Psyr_0006	0.34	+0.8
7,628	+		Psyr_0006	0.42	-1.1
7,628	+		Psyr_0006	0.42	+2.0
7,628	+		Psyr_0006	0.42	+0.3
7,628	+		Psyr_0006	0.42	-0.2
7,628	+		Psyr_0006	0.42	+0.8
7,628	+		Psyr_0006	0.42	-1.0
7,628	+		Psyr_0006	0.42	+0.4
7,628	+		Psyr_0006	0.42	-0.1
7,629	-		Psyr_0006	0.42	+0.6
7,629	-		Psyr_0006	0.42	-0.2
7,629	-		Psyr_0006	0.42	+1.1
7,629	-		Psyr_0006	0.42	+0.9
7,629	-		Psyr_0006	0.42	-1.4
7,629	-		Psyr_0006	0.42	-1.9
7,629	-		Psyr_0006	0.42	-0.3
7,629	-		Psyr_0006	0.42	-0.4
7,629	-		Psyr_0006	0.42	-0.5
7,676	+		Psyr_0006	0.46	-3.2
7,676	+		Psyr_0006	0.46	+1.9
7,676	+		Psyr_0006	0.46	+0.5
7,677	-		Psyr_0006	0.46	+0.5
7,710	-		Psyr_0006	0.50	+0.3
7,749	-		Psyr_0006	0.53	+0.9
7,849	-		Psyr_0006	0.63	-0.1
7,849	-		Psyr_0006	0.63	+0.3
7,963	-		Psyr_0006	0.74	+0.9
7,970	+		Psyr_0006	0.75	-1.6
7,970	+		Psyr_0006	0.75	+0.4
8,098	+		Psyr_0006	0.87	-1.3
8,098	+		Psyr_0006	0.87	+1.7
8,098	+		Psyr_0006	0.87	+1.7
8,099	-		Psyr_0006	0.87	-2.5
8,099	-		Psyr_0006	0.87	-2.3
8,099	-		Psyr_0006	0.87	-1.4
8,099	-		Psyr_0006	0.87	-0.4
8,099	-		Psyr_0006	0.87	+1.4
8,099	-		Psyr_0006	0.87	-0.5
8,165	-				+0.9
8,165	-				+0.5
8,308	+				-1.0
8,308	+				+0.6
8,308	+				+2.0
8,309	-				+1.2
8,363	+		Psyr_0007	0.13	+1.0
8,364	-		Psyr_0007	0.13	-0.2
8,386	+		Psyr_0007	0.15	-0.7
8,386	+		Psyr_0007	0.15	+0.1
8,386	+		Psyr_0007	0.15	-0.9
8,386	+		Psyr_0007	0.15	+1.9
8,387	-		Psyr_0007	0.15	-0.1
8,427	-		Psyr_0007	0.19	+0.2
8,616	-		Psyr_0007	0.38	-2.7
8,616	-		Psyr_0007	0.38	-1.7
8,723	+		Psyr_0007	0.48	+1.9
8,723	+		Psyr_0007	0.48	+1.2
8,723	+		Psyr_0007	0.48	+0.3
8,723	+		Psyr_0007	0.48	-3.2
8,723	+		Psyr_0007	0.48	-0.9
8,723	+		Psyr_0007	0.48	+0.0
8,723	+		Psyr_0007	0.48	+0.6
8,723	+		Psyr_0007	0.48	-1.1
8,723	+		Psyr_0007	0.48	+0.2
8,723	+		Psyr_0007	0.48	-0.1
8,723	+		Psyr_0007	0.48	-1.9
8,723	+		Psyr_0007	0.48	-0.2
8,723	+		Psyr_0007	0.48	-0.7
8,723	+		Psyr_0007	0.48	+1.8
8,724	-		Psyr_0007	0.49	+0.6
8,724	-		Psyr_0007	0.49	-0.1
8,724	-		Psyr_0007	0.49	+1.2
8,724	-		Psyr_0007	0.49	+3.6
8,724	-		Psyr_0007	0.49	+0.4
8,724	-		Psyr_0007	0.49	+1.9
8,724	-		Psyr_0007	0.49	-0.1
8,732	+		Psyr_0007	0.49	-0.2
8,732	+		Psyr_0007	0.49	+1.1
8,732	+		Psyr_0007	0.49	+0.3
8,803	-		Psyr_0007	0.56	+1.1
8,803	-		Psyr_0007	0.56	-0.2
8,838	+		Psyr_0007	0.60	+0.4
8,838	+		Psyr_0007	0.60	+0.3
8,838	+		Psyr_0007	0.60	+0.9
8,838	+		Psyr_0007	0.60	+0.2
8,854	-		Psyr_0007	0.61	+1.3
8,917	-		Psyr_0007	0.68	+0.4
8,918	+		Psyr_0007	0.68	+2.5
8,918	+		Psyr_0007	0.68	+0.3
8,918	+		Psyr_0007	0.68	-0.7
8,918	+		Psyr_0007	0.68	+0.6
8,918	+		Psyr_0007	0.68	-0.3
8,918	+		Psyr_0007	0.68	-0.6
8,918	+		Psyr_0007	0.68	-1.3
8,918	+		Psyr_0007	0.68	-0.1
8,918	+		Psyr_0007	0.68	-0.4
8,918	+		Psyr_0007	0.68	+0.5
8,919	-		Psyr_0007	0.68	+0.4
8,919	-		Psyr_0007	0.68	-1.7
8,919	-		Psyr_0007	0.68	+0.9
8,919	-		Psyr_0007	0.68	+0.3
8,919	-		Psyr_0007	0.68	+0.6
8,919	-		Psyr_0007	0.68	+0.1
8,919	-		Psyr_0007	0.68	-0.4
8,919	-		Psyr_0007	0.68	+2.6
8,919	-		Psyr_0007	0.68	-0.1
8,919	-		Psyr_0007	0.68	-0.4
8,946	-		Psyr_0007	0.71	+2.3
8,960	+		Psyr_0007	0.72	+1.5
8,960	+		Psyr_0007	0.72	+0.3
8,960	+		Psyr_0007	0.72	+0.2
8,960	+		Psyr_0007	0.72	+1.3
8,960	+		Psyr_0007	0.72	+1.3
8,960	+		Psyr_0007	0.72	-0.1
8,960	+		Psyr_0007	0.72	+1.1
8,960	+		Psyr_0007	0.72	-0.7
8,961	-		Psyr_0007	0.72	+0.2
8,961	-		Psyr_0007	0.72	+0.9
8,961	-		Psyr_0007	0.72	-1.0
8,961	-		Psyr_0007	0.72	+0.4
8,961	-		Psyr_0007	0.72	-1.4
8,991	+		Psyr_0007	0.75	+0.8
8,991	+		Psyr_0007	0.75	+0.9
8,991	+				+0.9
8,991	+		Psyr_0007	0.75	+2.3
8,992	-		Psyr_0007	0.75	+0.6
8,992	-		Psyr_0007	0.75	+0.3
9,036	-		Psyr_0007	0.79	+1.2
9,123	+		Psyr_0007	0.88	+2.1
9,123	+		Psyr_0007	0.88	-1.3
9,123	+		Psyr_0007	0.88	-0.7
9,124	-		Psyr_0007	0.88	-0.4
9,124	-		Psyr_0007	0.88	-2.0
9,175	+				-0.4
9,176	-				+1.4
9,280	+				-0.5
9,280	+				-0.7
9,280	+				+1.9
9,301	+				-1.7
9,301	+				-1.5
9,302	-				-1.2
9,302	-				-0.9
9,305	-				+0.9
9,305	-				-0.1
9,305	-				-0.2
9,341	-				-0.3
9,419	+				+0.1
9,419	+				-0.6
9,419	+				-1.1
9,419	+				+0.6
9,419	+				-0.1
9,420	-				+0.1
9,420	-				-0.2
9,420	-				+0.3
9,420	-				+1.7
9,484	+				-0.9
9,485	-				-0.1
9,485	-				+0.7
9,551	-		Psyr_0008	0.14	-0.7
9,579	+		Psyr_0008	0.17	-0.9
9,579	+		Psyr_0008	0.17	-1.4
9,579	+		Psyr_0008	0.17	-0.7
9,579	+		Psyr_0008	0.17	+1.1
9,580	-		Psyr_0008	0.17	-1.2
9,580	-		Psyr_0008	0.17	-0.7
9,580	-		Psyr_0008	0.17	+0.9
9,580	-		Psyr_0008	0.17	-0.9
9,580	-		Psyr_0008	0.17	-1.6
9,610	+		Psyr_0008	0.21	-0.9
9,610	+		Psyr_0008	0.21	-2.1
9,610	+		Psyr_0008	0.21	+1.0
9,610	+		Psyr_0008	0.21	-0.1
9,610	+		Psyr_0008	0.21	+0.0
9,611	-		Psyr_0008	0.21	+0.4
9,619	+		Psyr_0008	0.21	+0.2
9,645	+		Psyr_0008	0.24	-0.3
9,727	+		Psyr_0008	0.33	-0.1
9,727	+		Psyr_0008	0.33	+0.5
9,728	-		Psyr_0008	0.33	+0.2
9,731	+		Psyr_0008	0.33	+0.4
9,731	+		Psyr_0008	0.33	-0.4
9,731	+		Psyr_0008	0.33	-0.0
9,731	+		Psyr_0008	0.33	-0.4
9,731	+		Psyr_0008	0.33	-0.4
9,731	+		Psyr_0008	0.33	+1.2
9,836	+		Psyr_0008	0.44	+1.2
9,837	-		Psyr_0008	0.44	+0.3
9,837	-		Psyr_0008	0.44	+0.1
10,035	+		Psyr_0008	0.64	+0.8
10,036	-		Psyr_0008	0.64	+0.3
10,048	+		Psyr_0008	0.65	+0.9
10,049	-		Psyr_0008	0.66	+2.5
10,057	+		Psyr_0008	0.66	+1.2
10,058	-		Psyr_0008	0.66	-0.7
10,078	+		Psyr_0008	0.69	+0.2
10,079	-		Psyr_0008	0.69	+0.3
10,079	-		Psyr_0008	0.69	+0.2
10,079	-		Psyr_0008	0.69	-0.2
10,079	-		Psyr_0008	0.69	-1.0
10,079	-		Psyr_0008	0.69	-0.7
10,130	+		Psyr_0008	0.74	+0.2
10,130	+		Psyr_0008	0.74	+0.2
10,130	+		Psyr_0008	0.74	-0.1
10,131	-		Psyr_0008	0.74	+0.9
10,131	-		Psyr_0008	0.74	-1.1
10,131	-		Psyr_0008	0.74	+0.6
10,175	+		Psyr_0008	0.78	+1.5
10,194	+		Psyr_0008	0.80	+0.9
10,195	-		Psyr_0008	0.81	+0.2