Strain Fitness in Pantoea sp. MT58 around IAI47_01725

Experiment: Defined media control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01720 and IAI47_01725 are separated by 135 nucleotidesIAI47_01725 and IAI47_01730 overlap by 1 nucleotidesIAI47_01730 and IAI47_01735 overlap by 8 nucleotides IAI47_01720: IAI47_01720 - AEC family transporter, at 376,435 to 377,394 _01720 IAI47_01725: IAI47_01725 - biotin-independent malonate decarboxylase subunit gamma, at 377,530 to 378,330 _01725 IAI47_01730: IAI47_01730 - biotin-independent malonate decarboxylase subunit beta, at 378,330 to 379,163 _01730 IAI47_01735: IAI47_01735 - malonate decarboxylase acyl carrier protein, at 379,156 to 379,455 _01735 Position (kb) 377 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 376.579 kb on + strand, within IAI47_01720at 376.579 kb on + strand, within IAI47_01720at 376.580 kb on - strand, within IAI47_01720at 376.580 kb on - strand, within IAI47_01720at 376.591 kb on - strand, within IAI47_01720at 376.591 kb on - strand, within IAI47_01720at 376.777 kb on - strand, within IAI47_01720at 377.035 kb on + strand, within IAI47_01720at 377.035 kb on + strand, within IAI47_01720at 377.036 kb on - strand, within IAI47_01720at 377.069 kb on + strand, within IAI47_01720at 377.095 kb on + strand, within IAI47_01720at 377.095 kb on + strand, within IAI47_01720at 377.095 kb on + strand, within IAI47_01720at 377.098 kb on + strand, within IAI47_01720at 377.098 kb on + strand, within IAI47_01720at 377.099 kb on - strand, within IAI47_01720at 377.124 kb on + strand, within IAI47_01720at 377.124 kb on + strand, within IAI47_01720at 377.147 kb on + strand, within IAI47_01720at 377.148 kb on - strand, within IAI47_01720at 377.148 kb on - strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.165 kb on - strand, within IAI47_01720at 377.183 kb on - strand, within IAI47_01720at 377.284 kb on - strand, within IAI47_01720at 377.307 kb on + strandat 377.325 kb on + strandat 377.341 kb on + strandat 377.341 kb on + strandat 377.342 kb on - strandat 377.342 kb on - strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.350 kb on - strandat 377.350 kb on - strandat 377.350 kb on - strandat 377.350 kb on - strandat 377.350 kb on - strandat 377.351 kb on - strandat 377.355 kb on + strandat 377.356 kb on - strandat 377.383 kb on + strandat 377.383 kb on + strandat 377.383 kb on + strandat 377.383 kb on + strandat 377.383 kb on + strandat 377.384 kb on - strandat 377.384 kb on - strandat 377.384 kb on - strandat 377.384 kb on - strandat 377.384 kb on - strandat 377.387 kb on + strandat 377.387 kb on + strandat 377.388 kb on - strandat 377.388 kb on - strandat 377.388 kb on - strandat 377.394 kb on + strandat 377.395 kb on - strandat 377.395 kb on - strandat 377.405 kb on + strandat 377.405 kb on + strandat 377.405 kb on + strandat 377.410 kb on - strandat 377.441 kb on + strandat 377.442 kb on - strandat 377.442 kb on - strandat 377.444 kb on - strandat 377.482 kb on + strandat 377.483 kb on - strandat 377.483 kb on - strandat 377.523 kb on + strandat 377.523 kb on + strandat 377.523 kb on + strandat 377.531 kb on + strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.580 kb on + strandat 377.580 kb on + strandat 377.580 kb on + strandat 377.580 kb on + strandat 377.581 kb on - strandat 377.607 kb on + strandat 377.607 kb on + strandat 377.641 kb on + strand, within IAI47_01725at 377.641 kb on + strand, within IAI47_01725at 377.641 kb on + strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.736 kb on + strand, within IAI47_01725at 377.736 kb on + strand, within IAI47_01725at 377.737 kb on - strand, within IAI47_01725at 377.737 kb on - strand, within IAI47_01725at 377.737 kb on - strand, within IAI47_01725at 377.737 kb on - strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.755 kb on - strand, within IAI47_01725at 377.919 kb on + strand, within IAI47_01725at 377.919 kb on + strand, within IAI47_01725at 377.920 kb on - strand, within IAI47_01725at 377.920 kb on - strand, within IAI47_01725at 378.029 kb on + strand, within IAI47_01725at 378.029 kb on + strand, within IAI47_01725at 378.030 kb on - strand, within IAI47_01725at 378.030 kb on - strand, within IAI47_01725at 378.030 kb on - strand, within IAI47_01725at 378.030 kb on - strand, within IAI47_01725at 378.170 kb on + strand, within IAI47_01725at 378.202 kb on - strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.223 kb on - strand, within IAI47_01725at 378.331 kb on + strandat 378.331 kb on + strandat 378.331 kb on + strandat 378.331 kb on + strandat 378.332 kb on - strandat 378.332 kb on - strandat 378.332 kb on - strandat 378.360 kb on - strandat 378.360 kb on - strandat 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.465 kb on - strand, within IAI47_01730at 378.465 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.566 kb on + strand, within IAI47_01730at 378.566 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.667 kb on + strand, within IAI47_01730at 378.667 kb on + strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.689 kb on + strand, within IAI47_01730at 378.689 kb on + strand, within IAI47_01730at 378.690 kb on - strand, within IAI47_01730at 378.745 kb on + strand, within IAI47_01730at 378.745 kb on + strand, within IAI47_01730at 378.746 kb on - strand, within IAI47_01730at 378.777 kb on - strand, within IAI47_01730at 379.090 kb on + strandat 379.134 kb on + strandat 379.135 kb on - strandat 379.143 kb on - strandat 379.157 kb on + strandat 379.157 kb on + strandat 379.157 kb on + strandat 379.158 kb on - strandat 379.191 kb on + strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.198 kb on - strand, within IAI47_01735at 379.233 kb on + strand, within IAI47_01735at 379.234 kb on - strand, within IAI47_01735at 379.234 kb on - strand, within IAI47_01735at 379.264 kb on + strand, within IAI47_01735at 379.264 kb on + strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.326 kb on + strand, within IAI47_01735at 379.327 kb on - strand, within IAI47_01735

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined media control, anaerobic
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376,579 + IAI47_01720 0.15 -0.0
376,579 + IAI47_01720 0.15 +1.5
376,580 - IAI47_01720 0.15 +0.8
376,580 - IAI47_01720 0.15 -0.9
376,591 - IAI47_01720 0.16 +0.6
376,591 - IAI47_01720 0.16 +0.1
376,777 - IAI47_01720 0.36 +0.3
377,035 + IAI47_01720 0.62 +1.1
377,035 + IAI47_01720 0.62 +1.3
377,036 - IAI47_01720 0.63 -1.8
377,069 + IAI47_01720 0.66 +1.3
377,095 + IAI47_01720 0.69 +0.2
377,095 + IAI47_01720 0.69 -0.5
377,095 + IAI47_01720 0.69 -1.6
377,098 + IAI47_01720 0.69 -1.3
377,098 + IAI47_01720 0.69 -2.1
377,099 - IAI47_01720 0.69 +0.2
377,124 + IAI47_01720 0.72 -0.2
377,124 + IAI47_01720 0.72 -1.0
377,147 + IAI47_01720 0.74 +0.2
377,148 - IAI47_01720 0.74 +1.6
377,148 - IAI47_01720 0.74 +1.1
377,159 + IAI47_01720 0.75 -0.5
377,159 + IAI47_01720 0.75 +1.1
377,159 + IAI47_01720 0.75 +0.5
377,159 + IAI47_01720 0.75 +0.3
377,159 + IAI47_01720 0.75 +0.2
377,159 + IAI47_01720 0.75 +0.1
377,159 + IAI47_01720 0.75 -0.6
377,159 + IAI47_01720 0.75 +1.7
377,159 + IAI47_01720 0.75 +0.1
377,159 + IAI47_01720 0.75 -0.1
377,159 + IAI47_01720 0.75 -0.3
377,159 + IAI47_01720 0.75 +0.9
377,159 + IAI47_01720 0.75 +2.2
377,159 + IAI47_01720 0.75 +0.8
377,159 + IAI47_01720 0.75 -1.1
377,159 + IAI47_01720 0.75 -0.7
377,159 + IAI47_01720 0.75 -0.0
377,159 + IAI47_01720 0.75 -0.4
377,160 - IAI47_01720 0.76 +1.1
377,160 - IAI47_01720 0.76 -0.2
377,160 - IAI47_01720 0.76 -0.4
377,160 - IAI47_01720 0.76 -1.3
377,160 - IAI47_01720 0.76 -0.5
377,160 - IAI47_01720 0.76 -0.3
377,160 - IAI47_01720 0.76 +0.2
377,160 - IAI47_01720 0.76 +0.7
377,160 - IAI47_01720 0.76 -0.8
377,160 - IAI47_01720 0.76 -0.5
377,160 - IAI47_01720 0.76 -0.9
377,160 - IAI47_01720 0.76 -0.5
377,160 - IAI47_01720 0.76 -1.4
377,160 - IAI47_01720 0.76 +0.2
377,160 - IAI47_01720 0.76 +0.4
377,160 - IAI47_01720 0.76 +1.4
377,160 - IAI47_01720 0.76 +0.2
377,160 - IAI47_01720 0.76 +0.1
377,165 - IAI47_01720 0.76 -1.4
377,183 - IAI47_01720 0.78 -0.2
377,284 - IAI47_01720 0.88 +0.1
377,307 + +2.6
377,325 + +0.4
377,341 + +0.3
377,341 + +1.1
377,342 - +0.9
377,342 - +0.5
377,349 + -1.0
377,349 + -0.0
377,349 + -0.1
377,349 + +1.6
377,349 + -0.8
377,349 + -0.4
377,349 + +0.8
377,350 - +2.0
377,350 - -1.1
377,350 - -0.3
377,350 - -1.6
377,350 - +0.9
377,351 - -0.3
377,355 + +1.5
377,356 - -1.5
377,383 + -0.3
377,383 + +0.6
377,383 + -0.4
377,383 + +1.5
377,383 + +1.0
377,384 - +0.9
377,384 - +0.1
377,384 - -0.1
377,384 - -1.0
377,384 - -1.6
377,387 + +0.1
377,387 + +0.9
377,388 - -1.0
377,388 - -0.4
377,388 - -0.2
377,394 + +0.0
377,395 - -2.3
377,395 - -0.9
377,405 + -0.3
377,405 + +2.9
377,405 + -0.3
377,410 - -1.1
377,441 + -0.7
377,442 - +1.1
377,442 - +1.4
377,444 - +0.3
377,482 + -0.3
377,483 - -1.1
377,483 - -0.3
377,523 + +0.2
377,523 + +2.1
377,523 + -0.1
377,531 + -0.7
377,532 - +0.1
377,532 - +0.8
377,532 - +0.8
377,547 + +1.7
377,547 + -0.9
377,547 + -0.3
377,547 + -1.0
377,547 + -0.4
377,547 + -0.2
377,547 + -1.6
377,548 - -1.5
377,548 - -0.2
377,548 - -2.0
377,548 - +0.5
377,548 - +2.0
377,548 - -0.5
377,580 + -2.5
377,580 + -0.5
377,580 + +1.3
377,580 + +2.4
377,581 - +2.2
377,607 + +0.9
377,607 + +0.1
377,641 + IAI47_01725 0.14 -0.5
377,641 + IAI47_01725 0.14 -0.4
377,641 + IAI47_01725 0.14 -0.5
377,642 - IAI47_01725 0.14 -0.1
377,642 - IAI47_01725 0.14 +0.1
377,642 - IAI47_01725 0.14 -0.8
377,642 - IAI47_01725 0.14 +2.8
377,642 - IAI47_01725 0.14 -0.5
377,642 - IAI47_01725 0.14 -0.8
377,642 - IAI47_01725 0.14 -0.6
377,736 + IAI47_01725 0.26 -0.6
377,736 + IAI47_01725 0.26 +0.1
377,737 - IAI47_01725 0.26 +1.1
377,737 - IAI47_01725 0.26 +0.7
377,737 - IAI47_01725 0.26 +3.4
377,737 - IAI47_01725 0.26 +0.7
377,747 + IAI47_01725 0.27 +0.6
377,747 + IAI47_01725 0.27 +0.5
377,747 + IAI47_01725 0.27 +0.9
377,747 + IAI47_01725 0.27 -1.1
377,747 + IAI47_01725 0.27 -0.2
377,748 - IAI47_01725 0.27 +0.2
377,748 - IAI47_01725 0.27 -2.1
377,748 - IAI47_01725 0.27 -0.2
377,748 - IAI47_01725 0.27 +0.2
377,748 - IAI47_01725 0.27 +2.0
377,755 - IAI47_01725 0.28 +0.6
377,919 + IAI47_01725 0.49 -0.3
377,919 + IAI47_01725 0.49 +0.5
377,920 - IAI47_01725 0.49 +1.2
377,920 - IAI47_01725 0.49 +0.7
378,029 + IAI47_01725 0.62 +0.1
378,029 + IAI47_01725 0.62 +0.2
378,030 - IAI47_01725 0.62 +0.9
378,030 - IAI47_01725 0.62 +1.6
378,030 - IAI47_01725 0.62 +1.9
378,030 - IAI47_01725 0.62 +1.9
378,170 + IAI47_01725 0.80 -0.3
378,202 - IAI47_01725 0.84 -1.4
378,222 + IAI47_01725 0.86 +3.2
378,222 + IAI47_01725 0.86 -0.6
378,222 + IAI47_01725 0.86 -0.2
378,223 - IAI47_01725 0.87 -0.1
378,331 + +1.0
378,331 + -2.8
378,331 + -0.3
378,331 + +0.8
378,332 - +0.2
378,332 - -0.6
378,332 - +0.1
378,360 - +1.7
378,360 - +0.6
378,424 + IAI47_01730 0.11 -0.4
378,424 + IAI47_01730 0.11 +0.6
378,424 + IAI47_01730 0.11 +1.4
378,424 + IAI47_01730 0.11 +0.3
378,425 - IAI47_01730 0.11 -0.2
378,425 - IAI47_01730 0.11 -1.1
378,425 - IAI47_01730 0.11 -0.6
378,425 - IAI47_01730 0.11 -1.1
378,428 + IAI47_01730 0.12 +0.3
378,428 + IAI47_01730 0.12 +0.2
378,428 + IAI47_01730 0.12 -0.2
378,428 + IAI47_01730 0.12 +0.5
378,428 + IAI47_01730 0.12 +0.1
378,429 - IAI47_01730 0.12 +0.1
378,429 - IAI47_01730 0.12 +1.6
378,429 - IAI47_01730 0.12 -0.2
378,429 - IAI47_01730 0.12 +1.0
378,429 - IAI47_01730 0.12 -1.9
378,429 - IAI47_01730 0.12 +0.1
378,429 - IAI47_01730 0.12 +0.4
378,465 - IAI47_01730 0.16 +0.4
378,465 - IAI47_01730 0.16 -0.8
378,498 - IAI47_01730 0.20 -0.4
378,498 - IAI47_01730 0.20 +0.9
378,498 - IAI47_01730 0.20 +0.3
378,566 + IAI47_01730 0.28 +1.2
378,566 + IAI47_01730 0.28 -0.0
378,589 + IAI47_01730 0.31 -0.4
378,589 + IAI47_01730 0.31 +0.6
378,589 + IAI47_01730 0.31 +0.4
378,589 + IAI47_01730 0.31 +1.1
378,589 + IAI47_01730 0.31 +1.9
378,590 - IAI47_01730 0.31 +0.4
378,590 - IAI47_01730 0.31 -1.6
378,590 - IAI47_01730 0.31 +0.5
378,590 - IAI47_01730 0.31 +0.6
378,667 + IAI47_01730 0.40 +1.6
378,667 + IAI47_01730 0.40 -1.9
378,668 - IAI47_01730 0.41 +1.7
378,668 - IAI47_01730 0.41 +0.3
378,668 - IAI47_01730 0.41 +0.8
378,668 - IAI47_01730 0.41 +0.7
378,689 + IAI47_01730 0.43 +1.5
378,689 + IAI47_01730 0.43 +2.4
378,690 - IAI47_01730 0.43 -0.1
378,745 + IAI47_01730 0.50 -1.2
378,745 + IAI47_01730 0.50 -1.1
378,746 - IAI47_01730 0.50 -0.4
378,777 - IAI47_01730 0.54 -0.3
379,090 + +0.1
379,134 + -1.1
379,135 - -0.1
379,143 - -0.8
379,157 + -0.1
379,157 + -1.4
379,157 + -0.3
379,158 - -1.4
379,191 + IAI47_01735 0.12 +0.2
379,192 - IAI47_01735 0.12 -0.5
379,192 - IAI47_01735 0.12 +1.5
379,192 - IAI47_01735 0.12 -2.1
379,198 - IAI47_01735 0.14 -0.1
379,233 + IAI47_01735 0.26 +0.7
379,234 - IAI47_01735 0.26 -0.9
379,234 - IAI47_01735 0.26 -0.6
379,264 + IAI47_01735 0.36 -0.5
379,264 + IAI47_01735 0.36 +1.6
379,265 - IAI47_01735 0.36 -0.5
379,265 - IAI47_01735 0.36 +1.1
379,265 - IAI47_01735 0.36 +0.1
379,265 - IAI47_01735 0.36 +0.3
379,326 + IAI47_01735 0.57 +1.1
379,327 - IAI47_01735 0.57 +0.3

Or see this region's nucleotide sequence