Strain Fitness in Rahnella sp. WP5 around EX31_RS23680

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23670 and EX31_RS23675 are separated by 160 nucleotidesEX31_RS23675 and EX31_RS23680 are separated by 41 nucleotidesEX31_RS23680 and EX31_RS23685 are separated by 155 nucleotides EX31_RS23670: EX31_RS23670 - acid phosphatase AphA, at 498,532 to 499,245 _RS23670 EX31_RS23675: EX31_RS23675 - ABC transporter substrate-binding protein, at 499,406 to 500,185 _RS23675 EX31_RS23680: EX31_RS23680 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 500,227 to 501,381 _RS23680 EX31_RS23685: EX31_RS23685 - LysR family transcriptional regulator, at 501,537 to 502,490 _RS23685 Position (kb) 500 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 499.241 kb on - strandat 499.241 kb on - strandat 499.243 kb on + strandat 499.243 kb on + strandat 499.243 kb on + strandat 499.243 kb on + strandat 499.243 kb on + strandat 499.329 kb on + strandat 499.363 kb on - strandat 499.408 kb on - strandat 499.408 kb on - strandat 499.408 kb on - strandat 499.426 kb on + strandat 499.427 kb on - strandat 499.427 kb on - strandat 499.437 kb on + strandat 499.437 kb on + strandat 499.438 kb on - strandat 499.480 kb on + strandat 499.493 kb on - strand, within EX31_RS23675at 499.516 kb on + strand, within EX31_RS23675at 499.571 kb on + strand, within EX31_RS23675at 499.594 kb on - strand, within EX31_RS23675at 499.650 kb on - strand, within EX31_RS23675at 499.650 kb on - strand, within EX31_RS23675at 499.686 kb on + strand, within EX31_RS23675at 499.686 kb on + strand, within EX31_RS23675at 499.687 kb on - strand, within EX31_RS23675at 499.708 kb on - strand, within EX31_RS23675at 499.718 kb on - strand, within EX31_RS23675at 499.718 kb on - strand, within EX31_RS23675at 499.721 kb on + strand, within EX31_RS23675at 499.722 kb on - strand, within EX31_RS23675at 499.722 kb on - strand, within EX31_RS23675at 499.752 kb on + strand, within EX31_RS23675at 499.753 kb on - strand, within EX31_RS23675at 499.775 kb on + strand, within EX31_RS23675at 499.775 kb on + strand, within EX31_RS23675at 499.776 kb on - strand, within EX31_RS23675at 499.776 kb on - strand, within EX31_RS23675at 499.786 kb on + strand, within EX31_RS23675at 499.787 kb on - strand, within EX31_RS23675at 499.787 kb on - strand, within EX31_RS23675at 499.900 kb on + strand, within EX31_RS23675at 499.924 kb on + strand, within EX31_RS23675at 499.925 kb on - strand, within EX31_RS23675at 499.925 kb on - strand, within EX31_RS23675at 499.925 kb on - strand, within EX31_RS23675at 499.940 kb on - strand, within EX31_RS23675at 500.036 kb on - strand, within EX31_RS23675at 500.218 kb on + strandat 500.218 kb on + strandat 500.218 kb on + strandat 500.218 kb on + strandat 500.218 kb on + strandat 500.219 kb on - strandat 500.219 kb on - strandat 500.219 kb on - strandat 500.219 kb on - strandat 500.258 kb on + strandat 500.258 kb on + strandat 500.259 kb on - strandat 500.259 kb on - strandat 500.259 kb on - strandat 500.313 kb on + strandat 500.314 kb on - strandat 500.321 kb on + strandat 500.322 kb on - strandat 500.410 kb on - strand, within EX31_RS23680at 500.449 kb on + strand, within EX31_RS23680at 500.449 kb on + strand, within EX31_RS23680at 500.450 kb on - strand, within EX31_RS23680at 500.526 kb on - strand, within EX31_RS23680at 500.645 kb on + strand, within EX31_RS23680at 500.645 kb on + strand, within EX31_RS23680at 500.646 kb on - strand, within EX31_RS23680at 500.672 kb on + strand, within EX31_RS23680at 500.673 kb on - strand, within EX31_RS23680at 500.771 kb on + strand, within EX31_RS23680at 500.771 kb on + strand, within EX31_RS23680at 500.772 kb on - strand, within EX31_RS23680at 500.772 kb on - strand, within EX31_RS23680at 500.772 kb on - strand, within EX31_RS23680at 500.772 kb on - strand, within EX31_RS23680at 500.772 kb on - strand, within EX31_RS23680at 500.772 kb on - strand, within EX31_RS23680at 500.965 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.002 kb on + strand, within EX31_RS23680at 501.003 kb on - strand, within EX31_RS23680at 501.003 kb on - strand, within EX31_RS23680at 501.003 kb on - strand, within EX31_RS23680at 501.003 kb on - strand, within EX31_RS23680at 501.003 kb on - strand, within EX31_RS23680at 501.003 kb on - strand, within EX31_RS23680at 501.003 kb on - strand, within EX31_RS23680at 501.003 kb on - strand, within EX31_RS23680at 501.027 kb on - strand, within EX31_RS23680at 501.049 kb on + strand, within EX31_RS23680at 501.050 kb on - strand, within EX31_RS23680at 501.050 kb on - strand, within EX31_RS23680at 501.050 kb on - strand, within EX31_RS23680at 501.071 kb on + strand, within EX31_RS23680at 501.071 kb on + strand, within EX31_RS23680at 501.122 kb on + strand, within EX31_RS23680at 501.122 kb on + strand, within EX31_RS23680at 501.122 kb on + strand, within EX31_RS23680at 501.122 kb on + strand, within EX31_RS23680at 501.123 kb on - strand, within EX31_RS23680at 501.123 kb on - strand, within EX31_RS23680at 501.134 kb on + strand, within EX31_RS23680at 501.169 kb on + strand, within EX31_RS23680at 501.295 kb on - strandat 501.295 kb on - strandat 501.382 kb on - strandat 501.382 kb on - strandat 501.445 kb on - strandat 501.451 kb on + strandat 501.451 kb on + strandat 501.452 kb on - strandat 501.485 kb on + strandat 501.493 kb on - strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.533 kb on - strandat 501.533 kb on - strandat 501.719 kb on - strand, within EX31_RS23685at 501.719 kb on - strand, within EX31_RS23685at 501.775 kb on + strand, within EX31_RS23685at 501.776 kb on - strand, within EX31_RS23685at 501.838 kb on + strand, within EX31_RS23685at 501.839 kb on - strand, within EX31_RS23685at 501.845 kb on + strand, within EX31_RS23685at 501.845 kb on + strand, within EX31_RS23685at 501.845 kb on + strand, within EX31_RS23685at 501.845 kb on + strand, within EX31_RS23685at 501.846 kb on - strand, within EX31_RS23685at 501.846 kb on - strand, within EX31_RS23685at 501.846 kb on - strand, within EX31_RS23685at 501.846 kb on - strand, within EX31_RS23685at 501.887 kb on + strand, within EX31_RS23685at 501.895 kb on + strand, within EX31_RS23685at 501.896 kb on - strand, within EX31_RS23685at 501.985 kb on + strand, within EX31_RS23685at 501.985 kb on + strand, within EX31_RS23685at 501.985 kb on + strand, within EX31_RS23685at 501.985 kb on + strand, within EX31_RS23685at 501.986 kb on - strand, within EX31_RS23685at 502.058 kb on + strand, within EX31_RS23685at 502.058 kb on + strand, within EX31_RS23685at 502.083 kb on - strand, within EX31_RS23685at 502.115 kb on + strand, within EX31_RS23685at 502.115 kb on + strand, within EX31_RS23685at 502.180 kb on + strand, within EX31_RS23685at 502.180 kb on + strand, within EX31_RS23685at 502.218 kb on - strand, within EX31_RS23685at 502.282 kb on + strand, within EX31_RS23685at 502.282 kb on + strand, within EX31_RS23685at 502.283 kb on - strand, within EX31_RS23685at 502.353 kb on + strand, within EX31_RS23685at 502.353 kb on + strand, within EX31_RS23685at 502.353 kb on + strand, within EX31_RS23685at 502.353 kb on + strand, within EX31_RS23685at 502.354 kb on - strand, within EX31_RS23685at 502.355 kb on + strand, within EX31_RS23685at 502.355 kb on + strand, within EX31_RS23685at 502.355 kb on + strand, within EX31_RS23685at 502.355 kb on + strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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499,241 - +0.2
499,241 - +0.2
499,243 + -1.2
499,243 + +0.9
499,243 + +0.5
499,243 + +0.1
499,243 + -0.3
499,329 + -0.4
499,363 - -0.3
499,408 - -0.1
499,408 - +0.1
499,408 - +0.2
499,426 + +0.3
499,427 - -0.2
499,427 - -1.4
499,437 + -0.2
499,437 + +1.2
499,438 - -0.2
499,480 + +0.6
499,493 - EX31_RS23675 0.11 -1.1
499,516 + EX31_RS23675 0.14 +1.1
499,571 + EX31_RS23675 0.21 +0.1
499,594 - EX31_RS23675 0.24 +0.6
499,650 - EX31_RS23675 0.31 -0.8
499,650 - EX31_RS23675 0.31 +2.0
499,686 + EX31_RS23675 0.36 -0.0
499,686 + EX31_RS23675 0.36 -0.1
499,687 - EX31_RS23675 0.36 +1.3
499,708 - EX31_RS23675 0.39 -2.8
499,718 - EX31_RS23675 0.40 -0.2
499,718 - EX31_RS23675 0.40 -1.5
499,721 + EX31_RS23675 0.40 +1.1
499,722 - EX31_RS23675 0.41 +0.8
499,722 - EX31_RS23675 0.41 +1.3
499,752 + EX31_RS23675 0.44 +0.8
499,753 - EX31_RS23675 0.44 +0.1
499,775 + EX31_RS23675 0.47 +0.4
499,775 + EX31_RS23675 0.47 +0.4
499,776 - EX31_RS23675 0.47 -0.9
499,776 - EX31_RS23675 0.47 -1.0
499,786 + EX31_RS23675 0.49 +1.5
499,787 - EX31_RS23675 0.49 +1.2
499,787 - EX31_RS23675 0.49 -0.7
499,900 + EX31_RS23675 0.63 -0.8
499,924 + EX31_RS23675 0.66 +0.3
499,925 - EX31_RS23675 0.67 +1.8
499,925 - EX31_RS23675 0.67 +0.8
499,925 - EX31_RS23675 0.67 -0.5
499,940 - EX31_RS23675 0.68 +0.8
500,036 - EX31_RS23675 0.81 +1.6
500,218 + -0.4
500,218 + -1.2
500,218 + +0.6
500,218 + +1.4
500,218 + -1.0
500,219 - -0.6
500,219 - -0.8
500,219 - -0.2
500,219 - -0.3
500,258 + +1.6
500,258 + +1.8
500,259 - +0.7
500,259 - +0.1
500,259 - -1.5
500,313 + +0.8
500,314 - +1.1
500,321 + +1.5
500,322 - +0.5
500,410 - EX31_RS23680 0.16 -1.8
500,449 + EX31_RS23680 0.19 +0.5
500,449 + EX31_RS23680 0.19 +0.8
500,450 - EX31_RS23680 0.19 -0.4
500,526 - EX31_RS23680 0.26 +0.3
500,645 + EX31_RS23680 0.36 -1.0
500,645 + EX31_RS23680 0.36 +2.1
500,646 - EX31_RS23680 0.36 +0.6
500,672 + EX31_RS23680 0.39 -0.7
500,673 - EX31_RS23680 0.39 +1.2
500,771 + EX31_RS23680 0.47 +3.1
500,771 + EX31_RS23680 0.47 -0.8
500,772 - EX31_RS23680 0.47 +1.6
500,772 - EX31_RS23680 0.47 -0.8
500,772 - EX31_RS23680 0.47 +0.8
500,772 - EX31_RS23680 0.47 +0.1
500,772 - EX31_RS23680 0.47 -0.5
500,772 - EX31_RS23680 0.47 +1.1
500,965 + EX31_RS23680 0.64 -0.5
501,002 + EX31_RS23680 0.67 -0.8
501,002 + EX31_RS23680 0.67 -0.2
501,002 + EX31_RS23680 0.67 -0.2
501,002 + EX31_RS23680 0.67 +0.2
501,002 + EX31_RS23680 0.67 +0.8
501,002 + EX31_RS23680 0.67 +0.3
501,002 + EX31_RS23680 0.67 +0.8
501,002 + EX31_RS23680 0.67 -0.7
501,002 + EX31_RS23680 0.67 -0.3
501,003 - EX31_RS23680 0.67 -0.6
501,003 - EX31_RS23680 0.67 -0.2
501,003 - EX31_RS23680 0.67 -1.0
501,003 - EX31_RS23680 0.67 -0.9
501,003 - EX31_RS23680 0.67 +0.8
501,003 - EX31_RS23680 0.67 +1.8
501,003 - EX31_RS23680 0.67 -0.2
501,003 - EX31_RS23680 0.67 +0.8
501,027 - EX31_RS23680 0.69 -0.8
501,049 + EX31_RS23680 0.71 -0.6
501,050 - EX31_RS23680 0.71 +0.3
501,050 - EX31_RS23680 0.71 -1.3
501,050 - EX31_RS23680 0.71 +0.4
501,071 + EX31_RS23680 0.73 +1.0
501,071 + EX31_RS23680 0.73 -0.2
501,122 + EX31_RS23680 0.77 +1.1
501,122 + EX31_RS23680 0.77 +0.9
501,122 + EX31_RS23680 0.77 -0.1
501,122 + EX31_RS23680 0.77 +0.4
501,123 - EX31_RS23680 0.78 +0.8
501,123 - EX31_RS23680 0.78 -1.3
501,134 + EX31_RS23680 0.79 -1.7
501,169 + EX31_RS23680 0.82 -0.5
501,295 - -0.8
501,295 - -0.2
501,382 - +1.8
501,382 - -1.5
501,445 - +1.4
501,451 + -0.2
501,451 + -0.4
501,452 - +0.7
501,485 + -0.3
501,493 - +1.0
501,532 + +0.2
501,532 + +0.2
501,532 + +3.1
501,532 + -1.0
501,532 + +0.1
501,532 + -0.2
501,532 + -0.7
501,533 - -1.2
501,533 - +0.5
501,719 - EX31_RS23685 0.19 -0.2
501,719 - EX31_RS23685 0.19 -0.8
501,775 + EX31_RS23685 0.25 -0.7
501,776 - EX31_RS23685 0.25 -0.2
501,838 + EX31_RS23685 0.32 -1.2
501,839 - EX31_RS23685 0.32 +0.8
501,845 + EX31_RS23685 0.32 +0.6
501,845 + EX31_RS23685 0.32 +0.5
501,845 + EX31_RS23685 0.32 +0.0
501,845 + EX31_RS23685 0.32 +0.1
501,846 - EX31_RS23685 0.32 -3.4
501,846 - EX31_RS23685 0.32 +0.9
501,846 - EX31_RS23685 0.32 -0.8
501,846 - EX31_RS23685 0.32 +0.6
501,887 + EX31_RS23685 0.37 +1.8
501,895 + EX31_RS23685 0.38 +2.5
501,896 - EX31_RS23685 0.38 -1.9
501,985 + EX31_RS23685 0.47 -1.3
501,985 + EX31_RS23685 0.47 -0.5
501,985 + EX31_RS23685 0.47 +1.0
501,985 + EX31_RS23685 0.47 +0.4
501,986 - EX31_RS23685 0.47 -0.8
502,058 + EX31_RS23685 0.55 -3.0
502,058 + EX31_RS23685 0.55 +0.7
502,083 - EX31_RS23685 0.57 +0.3
502,115 + EX31_RS23685 0.61 -0.6
502,115 + EX31_RS23685 0.61 -1.1
502,180 + EX31_RS23685 0.67 +0.5
502,180 + EX31_RS23685 0.67 -0.2
502,218 - EX31_RS23685 0.71 +1.4
502,282 + EX31_RS23685 0.78 +1.1
502,282 + EX31_RS23685 0.78 -0.5
502,283 - EX31_RS23685 0.78 +1.5
502,353 + EX31_RS23685 0.86 -0.5
502,353 + EX31_RS23685 0.86 +0.8
502,353 + EX31_RS23685 0.86 +2.8
502,353 + EX31_RS23685 0.86 -1.1
502,354 - EX31_RS23685 0.86 +0.7
502,355 + EX31_RS23685 0.86 -0.4
502,355 + EX31_RS23685 0.86 -1.5
502,355 + EX31_RS23685 0.86 +1.5
502,355 + EX31_RS23685 0.86 -1.0
502,356 - EX31_RS23685 0.86 +3.1
502,356 - EX31_RS23685 0.86 +0.6
502,356 - EX31_RS23685 0.86 +1.2
502,356 - EX31_RS23685 0.86 +2.1
502,356 - EX31_RS23685 0.86 -0.7

Or see this region's nucleotide sequence